Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006412

Physical Location & Seq

Genomic Coordinates Forward (+)

31168495 .. 31170288

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1238500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTTTCTCTAACTCCATGGCCGTTTTATCTGTGCTTCTGGTAGCGGTGCCCGTGGCTGCTTTCGTCTTGGACTGGCCAGATAACTTAGCTCCTATGATTGCCGCTGAAATATGTAAACAAGTTGAGTGTGGAAGGGGAGCATGCAAATTCGACATGAACGAACCATTAACTTTCACCTGCGAGTGCGAACCGAACTGGAAGCGAACGTTTGATGGGGACGATGATCTGAAGTTTCTCCCCTGTGTCATCCCCAACTGTACACTGGACTACAACTGCCAGCCAGCTCCACCTTCAGTTCCTAAGAAAGAAGTCCCTCACAATTTATCTGCCTTTGATCCTTGTTACTGGTCTTACTGCGGAGAAGGTAACTGCGTAAGGAACAGCACGTACAATTACGCACCCATCTGTGAATGCAAATCCGGCTCCTCTAATCTTCTCAACGTCACAGCATTCCCCTGCTACAATGAATGCACACTTCAACCCGACTGCGCAAGTCTAGGAATTAAGGTTGCAAACTCAAATTCCCGCACTGGCTCTGGGAATGACAGTAGTCAAGCTACATCGTTCTTGCCCGGAAAGTTCCTGTTGATGGCCATAGTGACGGTGTCCGTGGGTATGATTCTGAGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

22.91

Weight (kDa)

4.86

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006412)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03170 FvH4_6g03180
malus_domestica	MD04G1222300.v1.1 MD04G1222400.v1.1 MD12G1238500.v1.1
prunus_persica	Prupe.6G341400_v2.0.a1
pyrus_communis	pycom04g19670 pycom12g21920
rosa_chinensis	RchiOBHm_Chr3g0451431 RchiOBHm_Chr3g0451451
rosa_laevigata	RLG00000025659 RLG00000025660
rosa_multiflora	Rmu_sc0002575.1_g000001 Rmu_sc0009360.1_g000055 Rmu_sc0021369.1_g000004 Rmu_ssc0000091.1_g000020
rosa_roxburghii	Rroxscaffold_164G00436480 Rroxscaffold_6G00428850
rosa_rugosa	Rorug02G0633900
rosa_samantha	Rh3AG036800 Rh3AG036900 Rh3BG037400 Rh3CG036000 Rh3DG036900 Rh3DG037000
rosa_wichuraiana	Rw3G002720 Rw3G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
Acc16I	TGCGCA	1 cut(s)	493
Acc36I	ACCTGC	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	4 cut(s)	47, 105, 360, 529
AclI	AACGTT	1 cut(s)	209
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	3 cut(s)	21, 77, 594
AcsI	RAATTY	2 cut(s)	149, 523
AcuI	CTGAAG	2 cut(s)	251, 279
AfaI	GTAC	2 cut(s)	262, 392
AfiI	CCNNNNNNNGG	1 cut(s)	592
AgsI	TTSAA	1 cut(s)	482
AluBI	AGCT	3 cut(s)	92, 287, 560
AluI	AGCT	3 cut(s)	92, 287, 560
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	3 cut(s)	21, 77, 594
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	2 cut(s)	149, 523
AspLEI	GCGC	1 cut(s)	494
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	54
BalI	TGGCCA	2 cut(s)	79, 596
BanI	GGYRCC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	3 cut(s)	209, 413, 586
BceAI	ACGGC	1 cut(s)	8
BcnI	CCSGG	1 cut(s)	576
BfaI	CTAG	1 cut(s)	500
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	60, 105
BlsI	GCNGC	2 cut(s)	61, 106
Bme1390I	CCNGG	1 cut(s)	576
BmiI	GGNNCC	2 cut(s)	51, 427
BmrFI	CCNGG	1 cut(s)	576
BoxI	GACNNNNGTC	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	576
BsaAI	YACGTR	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	18, 54, 612
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse1I	ACTGG	5 cut(s)	80, 203, 270, 353, 538
BseDI	CCNNGG	3 cut(s)	18, 54, 612
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	5 cut(s)	80, 203, 270, 353, 538
BseRI	GAGGAG	1 cut(s)	418
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	3 cut(s)	23, 79, 596
BshNI	GGYRCC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	423, 576
BslFI	GGGAC	2 cut(s)	233, 299
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmFI	GGGAC	2 cut(s)	233, 299
BsmI	GAATGC	3 cut(s)	419, 452, 476
BsnI	GGCC	3 cut(s)	23, 79, 596
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	226, 337
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	4 cut(s)	47, 105, 360, 529
BspANI	GGCC	3 cut(s)	23, 79, 596
BspCNI	CTCAG	1 cut(s)	618
BspLI	GGNNCC	2 cut(s)	51, 427
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	260
BsrI	ACTGG	5 cut(s)	80, 203, 270, 353, 538
BssECI	CCNNGG	3 cut(s)	18, 54, 612
BssMI	GATC	2 cut(s)	226, 337
BssT1I	CCWWGG	1 cut(s)	18
Bst4CI	ACNGT	3 cut(s)	260, 551, 607
BstAUI	TGTACA	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	3 cut(s)	145, 281, 285
BstDEI	CTNAG	3 cut(s)	88, 303, 626
BstDSI	CCRYGG	3 cut(s)	18, 54, 612
BstF5I	GGATG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	2 cut(s)	229, 340
BstMBI	GATC	2 cut(s)	226, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	423
BstNSI	RCATGY	1 cut(s)	147
BstPAI	GACNNNNGTC	1 cut(s)	552
BstSCI	CCNGG	1 cut(s)	574
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	46
BsuRI	GGCC	3 cut(s)	23, 79, 596
BtgI	CCRYGG	3 cut(s)	18, 54, 612
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	263, 531
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	3 cut(s)	145, 281, 285
CfoI	GCGC	1 cut(s)	494
Csp6I	GTAC	2 cut(s)	261, 391
CviAII	CATG	3 cut(s)	19, 144, 157
CviQI	GTAC	2 cut(s)	261, 391
DdeI	CTNAG	3 cut(s)	88, 303, 626
DpnI	GATC	2 cut(s)	228, 339
DpnII	GATC	2 cut(s)	226, 337
EaeI	YGGCCR	3 cut(s)	21, 77, 594
Eco130I	CCWWGG	1 cut(s)	18
Eco57I	CTGAAG	2 cut(s)	251, 279
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	3 cut(s)	22, 147, 160
FaiI	YATR	7 cut(s)	20, 98, 115, 145, 158, 599, 620
FaqI	GGGAC	2 cut(s)	233, 299
FatI	CATG	3 cut(s)	18, 143, 156
FauI	CCCGC	1 cut(s)	536
Fnu4HI	GCNGC	2 cut(s)	60, 105
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	2 cut(s)	60, 105
FspBI	CTAG	1 cut(s)	500
FspI	TGCGCA	1 cut(s)	493
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	2 cut(s)	60, 105
HaeIII	GGCC	3 cut(s)	23, 79, 596
HapII	CCGG	2 cut(s)	423, 576
HhaI	GCGC	1 cut(s)	494
Hin1II	CATG	3 cut(s)	22, 147, 160
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HinfI	GANTC	1 cut(s)	622
HpaII	CCGG	2 cut(s)	423, 576
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	119, 263
Hpy188I	TCNGA	2 cut(s)	231, 627
Hpy8I	GTNNAC	2 cut(s)	119, 263
HpyAV	CCTTC	3 cut(s)	129, 303, 359
HpyCH4III	ACNGT	3 cut(s)	260, 551, 607
HpyCH4IV	ACGT	3 cut(s)	209, 389, 444
HpyCH4V	TGCA	4 cut(s)	147, 417, 474, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	423
HpyF3I	CTNAG	3 cut(s)	88, 303, 626
HpySE526I	ACGT	3 cut(s)	209, 389, 444
Hsp92II	CATG	3 cut(s)	22, 147, 160
HspAI	GCGC	1 cut(s)	492
Kzo9I	GATC	2 cut(s)	226, 337
LmnI	GCTCC	4 cut(s)	97, 140, 292, 431
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	3 cut(s)	209, 389, 444
MaeIII	GTNAC	4 cut(s)	344, 368, 445, 601
MalI	GATC	2 cut(s)	228, 339
MboI	GATC	2 cut(s)	226, 337
MboII	GAAGA	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	2 cut(s)	79, 596
MluCI	AATT	5 cut(s)	149, 322, 394, 504, 523
MluNI	TGGCCA	2 cut(s)	79, 596
MnlI	CCTC	3 cut(s)	327, 439, 621
Mox20I	TGGCCA	2 cut(s)	79, 596
MscI	TGGCCA	2 cut(s)	79, 596
MseI	TTAA	2 cut(s)	170, 507
Msp20I	TGGCCA	2 cut(s)	79, 596
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	423, 576
MspR9I	CCNGG	1 cut(s)	576
Mva1269I	GAATGC	3 cut(s)	419, 452, 476
MwoI	GCNNNNNNNGC	1 cut(s)	423
NciI	CCSGG	1 cut(s)	576
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	226, 337
NlaIII	CATG	3 cut(s)	22, 147, 160
NlaIV	GGNNCC	2 cut(s)	51, 427
NmuCI	GTSAC	2 cut(s)	445, 601
NsbI	TGCGCA	1 cut(s)	493
NspI	RCATGY	1 cut(s)	147
PaeI	GCATGC	1 cut(s)	147
PaqCI	CACCTGC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	3 cut(s)	419, 452, 476
PfeI	GAWTC	1 cut(s)	622
PflFI	GACNNNGTC	1 cut(s)	607
PkrI	GCNGC	2 cut(s)	61, 106
Ppu21I	YACGTR	1 cut(s)	390
PshAI	GACNNNNGTC	1 cut(s)	552
Psp1406I	AACGTT	1 cut(s)	209
PspN4I	GGNNCC	2 cut(s)	51, 427
PsrI	GAACNNNNNNTAC	2 cut(s)	374, 406
PsyI	GACNNNGTC	1 cut(s)	607
RsaI	GTAC	2 cut(s)	262, 392
RsaNI	GTAC	2 cut(s)	261, 391
SaqAI	TTAA	2 cut(s)	170, 507
SatI	GCNGC	2 cut(s)	60, 105
Sau3AI	GATC	2 cut(s)	226, 337
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	1 cut(s)	54
SphI	GCATGC	1 cut(s)	147
Sse9I	AATT	5 cut(s)	149, 322, 394, 504, 523
SsiI	CCGC	4 cut(s)	47, 105, 360, 529
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	3 cut(s)	260, 551, 607
TaiI	ACGT	3 cut(s)	212, 392, 447
TaqI	TCGA	1 cut(s)	153
TasI	AATT	5 cut(s)	149, 322, 394, 504, 523
TatI	WGTACW	1 cut(s)	260
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	2 cut(s)	170, 507
Tru9I	TTAA	2 cut(s)	170, 507
TscAI	CASTG	2 cut(s)	270, 538
TseFI	GTSAC	2 cut(s)	445, 601
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	2 cut(s)	445, 601
TspDTI	ATGAA	2 cut(s)	173, 483
TspGWI	ACGGA	1 cut(s)	601
TspRI	CASTG	2 cut(s)	270, 538
Tth111I	GACNNNGTC	1 cut(s)	607
XapI	RAATTY	2 cut(s)	149, 523
XceI	RCATGY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.