Rh3AG036800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0006412
Physical Location & Seq
Reverse (-)
2456210 .. 2457436
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG036800.1

Sequence Viewer

Length: 642 bp
ATGGCTCTCTCCAACTCCATGGCCTTTTTAGCTACGGTTCTTGTACTACTACCTATGGCTACTTTTGCTGTGGACTGGCCAGATATATCTCCTACTGCTGCAACGGAAATATGTAAAGAAGTGGAGTGTGGAAGAGGAACATGCAATTATAGCTCTAGTGCGCCATTACTCTATACGTGTGAGTGTGAAACTGGATGGAAGCGAACTGCCGAAGGAAATGATACTCTCAAGTTTCTCCCTTGTGTCATCCCTGACTGTACCCTGGACTACAATTGCCAAGCACCCCCTAAAGTTCCAGATTACACACAACTTCCAAGCAACTTATCTGCATTTGACCCTTGCAACTGGGTTTACTGCGGAGAAGGTACATGCGTAAAGAACTCAACCTATGTGTACACACCGGAGTGTAAATGCAACTCAGGGGCGTCGAATCTTCTCAACGTCACAGTATTCCCATGCTACAGTGAATGCACACTTAAACCCGACTGTGAACGCCTTGGAATCACAGTTGCAAATTCGACTACCAATTCAACTACCTCTTCTGACGGGAATGACAGTAATAAAGCTACCGAGTTTATGCCAGGAAAATTCCAGTTGGTGACTATAGTGATGGTGTCTGTGGGTATGATCCTGTGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.11

Weight (kDa)

4.49

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 357
AclWI GGATC 1 cut(s) 622
AcoI YGGCCR 1 cut(s) 77
AcsI RAATTY 2 cut(s) 514, 587
AcyI GRCGYC 1 cut(s) 425
AfaI GTAC 4 cut(s) 45, 259, 367, 395
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 1 cut(s) 531
AjnI CCWGG 2 cut(s) 261, 580
AleI CACNNNNGTG 1 cut(s) 403
AluBI AGCT 3 cut(s) 32, 153, 566
AluI AGCT 3 cut(s) 32, 153, 566
AlwI GGATC 1 cut(s) 622
AoxI GGCC 2 cut(s) 21, 77
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 2 cut(s) 514, 587
AspLEI GCGC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 610
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BalI TGGCCA 1 cut(s) 79
BbvI GCAGC 1 cut(s) 85
BccI CCATC 2 cut(s) 189, 604
BciT130I CCWGG 2 cut(s) 263, 582
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 2 cut(s) 460, 603
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 2 cut(s) 263, 582
BmrFI CCNGG 2 cut(s) 263, 582
BmrI ACTGGG 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 355
BpuEI CTTGAG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 425
BsaJI CCNNGG 3 cut(s) 18, 261, 496
BsaWI WCCGGW 1 cut(s) 400
Bse1I ACTGG 4 cut(s) 80, 196, 350, 592
BseBI CCWGG 2 cut(s) 263, 582
BseDI CCNNGG 3 cut(s) 18, 261, 496
BseGI GGATG 2 cut(s) 200, 246
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 4 cut(s) 80, 196, 350, 592
BseXI GCAGC 1 cut(s) 85
BshFI GGCC 2 cut(s) 23, 79
BsiSI CCGG 1 cut(s) 401
BsmI GAATGC 1 cut(s) 473
BsnI GGCC 2 cut(s) 23, 79
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 1 cut(s) 627
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 1 cut(s) 357
BspANI GGCC 2 cut(s) 23, 79
BspCNI CTCAG 1 cut(s) 431
BspPI GGATC 1 cut(s) 622
BsrGI TGTACA 1 cut(s) 393
BsrI ACTGG 4 cut(s) 80, 196, 350, 592
BssECI CCNNGG 3 cut(s) 18, 261, 496
BssMI GATC 1 cut(s) 627
BssNI GRCGYC 1 cut(s) 425
BssT1I CCWWGG 2 cut(s) 18, 496
Bst2UI CCWGG 2 cut(s) 263, 582
Bst4CI ACNGT 7 cut(s) 37, 257, 448, 464, 488, 508, 557
Bst6I CTCTTC 2 cut(s) 127, 544
BstACI GRCGYC 1 cut(s) 425
BstAUI TGTACA 1 cut(s) 393
BstBAI YACGTR 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 418
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 200, 246
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 1 cut(s) 630
BstMBI GATC 1 cut(s) 627
BstMWI GCNNNNNNNGC 3 cut(s) 29, 65, 150
BstNI CCWGG 2 cut(s) 263, 582
BstNSI RCATGY 2 cut(s) 144, 372
BstSCI CCNGG 2 cut(s) 261, 580
BstSFI CTRYAG 2 cut(s) 460, 603
BstV1I GCAGC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 19
BsuRI GGCC 2 cut(s) 23, 79
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 2 cut(s) 200, 246
BtsIMutI CAGTG 1 cut(s) 469
CfoI GCGC 1 cut(s) 163
CseI GACGC 1 cut(s) 414
Csp6I GTAC 4 cut(s) 44, 258, 366, 394
CviAII CATG 4 cut(s) 19, 141, 369, 456
CviJI RGCY 7 cut(s) 5, 23, 32, 59, 79, 153, 566
CviKI_1 RGCY 7 cut(s) 5, 23, 32, 59, 79, 153, 566
CviQI GTAC 4 cut(s) 44, 258, 366, 394
DdeI CTNAG 1 cut(s) 418
DpnI GATC 1 cut(s) 629
DpnII GATC 1 cut(s) 627
EaeI YGGCCR 1 cut(s) 77
Eam1104I CTCTTC 2 cut(s) 127, 544
EarI CTCTTC 2 cut(s) 127, 544
Eco130I CCWWGG 2 cut(s) 18, 496
EcoRII CCWGG 2 cut(s) 261, 580
EcoT14I CCWWGG 2 cut(s) 18, 496
ErhI CCWWGG 2 cut(s) 18, 496
FaeI CATG 4 cut(s) 22, 144, 372, 459
FatI CATG 4 cut(s) 18, 140, 368, 455
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 2 cut(s) 207, 233
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 99
HaeIII GGCC 2 cut(s) 23, 79
HapII CCGG 1 cut(s) 401
HgaI GACGC 1 cut(s) 414
HhaI GCGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 425
Hin1II CATG 4 cut(s) 22, 144, 372, 459
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HinfI GANTC 2 cut(s) 430, 501
HpaII CCGG 1 cut(s) 401
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 5 cut(s) 73, 352, 394, 396, 491
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 5 cut(s) 73, 352, 394, 396, 491
Hpy99I CGWCG 1 cut(s) 430
HpyAV CCTTC 2 cut(s) 206, 356
HpyCH4III ACNGT 7 cut(s) 37, 257, 448, 464, 488, 508, 557
HpyCH4IV ACGT 2 cut(s) 176, 441
HpyCH4V TGCA 7 cut(s) 101, 144, 329, 342, 414, 471, 512
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 65, 150
HpyF3I CTNAG 1 cut(s) 418
HpySE526I ACGT 2 cut(s) 176, 441
Hsp92I GRCGYC 1 cut(s) 425
Hsp92II CATG 4 cut(s) 22, 144, 372, 459
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 627
Lsp1109I GCAGC 1 cut(s) 85
MaeI CTAG 1 cut(s) 156
MaeII ACGT 2 cut(s) 176, 441
MaeIII GTNAC 2 cut(s) 442, 598
MalI GATC 1 cut(s) 629
MboI GATC 1 cut(s) 627
MboII GAAGA 3 cut(s) 144, 425, 531
MfeI CAATTG 1 cut(s) 271
MlsI TGGCCA 1 cut(s) 79
MluCI AATT 5 cut(s) 145, 271, 514, 526, 587
MluNI TGGCCA 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 2 cut(s) 128, 547
Mox20I TGGCCA 1 cut(s) 79
MscI TGGCCA 1 cut(s) 79
MseI TTAA 1 cut(s) 477
MslI CAYNNNNRTG 1 cut(s) 403
Msp20I TGGCCA 1 cut(s) 79
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 2 cut(s) 263, 582
MunI CAATTG 1 cut(s) 271
Mva1269I GAATGC 1 cut(s) 473
MvaI CCWGG 2 cut(s) 263, 582
MwoI GCNNNNNNNGC 3 cut(s) 29, 65, 150
NcoI CCATGG 1 cut(s) 18
NdeII GATC 1 cut(s) 627
NlaIII CATG 4 cut(s) 22, 144, 372, 459
NmuCI GTSAC 2 cut(s) 442, 598
NspI RCATGY 2 cut(s) 144, 372
OliI CACNNNNGTG 1 cut(s) 403
PctI GAATGC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 430, 501
PkrI GCNGC 1 cut(s) 100
Ppu21I YACGTR 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 261, 580
PspGI CCWGG 2 cut(s) 261, 580
RsaI GTAC 4 cut(s) 45, 259, 367, 395
RsaNI GTAC 4 cut(s) 44, 258, 366, 394
RseI CAYNNNNRTG 1 cut(s) 403
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 627
ScrFI CCNGG 2 cut(s) 263, 582
SetI ASST 9 cut(s) 34, 55, 155, 179, 367, 389, 444, 539, 568
SfcI CTRYAG 2 cut(s) 460, 603
SmiMI CAYNNNNRTG 1 cut(s) 403
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 5 cut(s) 145, 271, 514, 526, 587
SsiI CCGC 1 cut(s) 357
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 261, 580
StyI CCWWGG 2 cut(s) 18, 496
TaaI ACNGT 7 cut(s) 37, 257, 448, 464, 488, 508, 557
TaiI ACGT 2 cut(s) 179, 444
TaqI TCGA 2 cut(s) 428, 518
TasI AATT 5 cut(s) 145, 271, 514, 526, 587
TatI WGTACW 2 cut(s) 43, 393
TfiI GAWTC 2 cut(s) 430, 501
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 2 cut(s) 442, 598
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 2 cut(s) 442, 598
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 469
XapI RAATTY 2 cut(s) 514, 587
XceI RCATGY 2 cut(s) 144, 372
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.