FvH4_6g04140

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
2249384 .. 2254614
5231 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04140.t1

Sequence Viewer

Length: 1632 bp
ATGATGATTCCATTGAGCATGGTGATGTCCAAATTACCCAAATTACAAAATCTATCTGCTTCTGATCACTCATCTGTGGTCTCTTTGAACCTTTTCGTGGCGCTCCTTTGTGCTTGCATTGTGATTGGGCATCTTCTTGAGGAGAATCGGTGGGTGAATGAATCAATCACTGCCCTTTTGATCGGGGTGTCTACTGGAGTAGTTATTCTTCTGATCAGTGGAGGAAAAAGTTCACATCTTTTAGTATTCAGTGAAGATCTGTTCTTTATATACCTTCTACCACCTATTATCTTTAATGCCGGGTTTCAGGTGAAAAAGAAGCAGTTTTTCGTAAATTTCATTACTATTGTAATGTTCGGTGCTATTGGTACATTAGTATCCTGCAGCATCATAGCATTTGGTGCTACACAAATCTTTAAGAAATTGGATATTGGTTCGCTCGACATAGGGGATTATCTTGCTATTGGTGCAATATTTGCTGCAACGGATTCCGTATGCACGTTGCAGGTGCTCAATCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGAGTTGTTAACGATGCTACATCTGTGGTGCTTTTCAATGCTATCCAGAGCTTTGATCTGACGCACATTGATCCCAGAATCGCCTTGCAGTTTATGGGCAACTTTTTGTATTTGTTTTTTTCAAGCACCATGCTAGGAGTGATTACAGGGCTGCTAAGTGCTTTCATCATCAAAAAGCTTTATTTTGCAAGGCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTCATGGCATACCTTTCATATATACTGGCTGAACTATTCTATTTGAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTGATGTCCCATTACACCTGGCACAATGTGACAGAGAGTTCAAGAGTCACGACCAAGCATGCTTTTGCAACCTTGTCATTTGTTTGCGAGATTTTTATCTTCCTCTATGTTGGTATGGATGCCTTGGACATTGAAAAGTGGAGATTCGTAAGTGATAGTCCTGGAACATCAGTGGCAGTGAGTTCAATACTGCTAAGTCTTGTGATGCTTGGAAGAGCAGCTTTTGTGTTTCCCTTGTCCTTTTTGTCAAACTTATCGAAGAAAAATGACAGGGAGAAAATTAGCCTCCAGCAGCAAGTGATAATATGGTGGGCTGGTCTTATGAGAGGTGCTGTATCTATAGCACTTGCTTATAATCAGTTTACAAGGTCTGGTCACACTCAATTGCGAGCAAATGCAATCATGATCACCAGCACAATAAGTGTTGTTCTTGTCAGCACAGTGGTGTTTGGTTTGATGACAAAACCTCTAATTAGATTTTTGCTGCCTCACAAACAAATGACCAGCACAACCAGCATTGTGTCAGACCCACCCTCTCCGAAGTCGATCATTGTTCCGCTTCTTGGGCAGGATTCTGAAGCTGAACTGAGTGGTCATGAGGTGCGTCGTCCAGCCAGTATACGTGATCTTCTGACGACTCCTACACACACTGTACATCGCTACTGGCGTAAGTTTGATAATGCTTTCATGCGTCCGGTATTTGGTGGTCGGGGTTTTGTTCCCTTTGTTCCTGGCTCACCAACTGAACGGCACAACACTCAATTCCAATGA

Protein Analysis

544

Amino Acids

60.15

Weight (kDa)

8.63

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 34 - 445 1.1e-54 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1215
AarI CACCTGC 1 cut(s) 496
Acc36I ACCTGC 1 cut(s) 496
AccI GTMKAC 2 cut(s) 191, 1480
AciI CCGC 1 cut(s) 1418
AclWI GGATC 1 cut(s) 623
AcsI RAATTY 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 1458
AdeI CACNNNGTG 1 cut(s) 889
AfaI GTAC 3 cut(s) 370, 539, 1515
AfiI CCNNNNNNNGG 3 cut(s) 97, 1424, 1562
AgsI TTSAA 6 cut(s) 88, 595, 681, 903, 995, 1047
AjnI CCWGG 3 cut(s) 878, 1021, 1591
AleI CACNNNNGTG 1 cut(s) 1304
AluBI AGCT 4 cut(s) 609, 736, 1082, 1442
AluI AGCT 4 cut(s) 609, 736, 1082, 1442
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 2 cut(s) 85, 518
AlwI GGATC 1 cut(s) 623
ApeKI GCWGC 6 cut(s) 384, 479, 709, 1079, 1153, 1345
ApoI RAATTY 1 cut(s) 334
Asp700I GAANNNNTTC 2 cut(s) 92, 229
AspLEI GCGC 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 5 cut(s) 34, 166, 322, 1261, 1590
BaeI ACNNNNGTAYC 4 cut(s) 360, 360, 393, 393
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 6 cut(s) 396, 466, 696, 1091, 1165, 1332
BceAI ACGGC 1 cut(s) 1625
BciT130I CCWGG 3 cut(s) 880, 1023, 1593
BciVI GTATCC 1 cut(s) 388
BclI TGATCA 3 cut(s) 64, 213, 1266
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 85, 518
BfaI CTAG 1 cut(s) 692
BfmI CTRYAG 3 cut(s) 382, 756, 1200
BfoI RGCGCY 1 cut(s) 104
BfuAI ACCTGC 1 cut(s) 496
BfuI GTATCC 1 cut(s) 388
BglII AGATCT 1 cut(s) 256
BisI GCNGC 6 cut(s) 385, 480, 710, 1080, 1154, 1346
BlsI GCNGC 6 cut(s) 386, 481, 711, 1081, 1155, 1347
Bme1390I CCNGG 4 cut(s) 301, 880, 1023, 1593
BmrFI CCNGG 4 cut(s) 301, 880, 1023, 1593
BmsI GCATC 6 cut(s) 139, 396, 562, 771, 970, 1056
BpmI CTGGAG 2 cut(s) 216, 1133
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 301
BsaAI YACGTR 1 cut(s) 1484
BsaBI GATNNNNATC 1 cut(s) 956
BsaI GGTCTC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 984
BsaWI WCCGGW 1 cut(s) 1555
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 1424, 1562
Bse1I ACTGG 4 cut(s) 199, 813, 1476, 1529
Bse8I GATNNNNATC 1 cut(s) 956
BseBI CCWGG 3 cut(s) 880, 1023, 1593
BseDI CCNNGG 1 cut(s) 984
BseGI GGATG 2 cut(s) 526, 985
BseJI GATNNNNATC 1 cut(s) 956
BseLI CCNNNNNNNGG 3 cut(s) 97, 1424, 1562
BseMII CTCAG 1 cut(s) 1439
BseNI ACTGG 4 cut(s) 199, 813, 1476, 1529
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 6 cut(s) 396, 466, 696, 1091, 1165, 1332
BsiHKAI GWGCWC 1 cut(s) 513
BsiSI CCGG 2 cut(s) 300, 1556
BslFI GGGAC 1 cut(s) 853
BslI CCNNNNNNNGG 3 cut(s) 97, 1424, 1562
BsmAI GTCTC 2 cut(s) 85, 518
BsmFI GGGAC 1 cut(s) 853
BsmI GAATGC 1 cut(s) 834
Bso31I GGTCTC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 513
Bsp1407I TGTACA 2 cut(s) 537, 1513
BspACI CCGC 1 cut(s) 1418
BspCNI CTCAG 1 cut(s) 1440
BspHI TCATGA 2 cut(s) 1263, 1456
BspMAI CTGCAG 1 cut(s) 386
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 1 cut(s) 623
BspQI GCTCTTC 1 cut(s) 1069
BspTNI GGTCTC 1 cut(s) 85
BsrGI TGTACA 2 cut(s) 537, 1513
BsrI ACTGG 4 cut(s) 199, 813, 1476, 1529
BssECI CCNNGG 1 cut(s) 984
BssNAI GTATAC 1 cut(s) 1481
BssT1I CCWWGG 1 cut(s) 984
Bst1107I GTATAC 1 cut(s) 1481
Bst2UI CCWGG 3 cut(s) 880, 1023, 1593
Bst4CI ACNGT 5 cut(s) 537, 542, 844, 1303, 1513
Bst6I CTCTTC 1 cut(s) 1069
BstAPI GCANNNNNTGC 2 cut(s) 401, 476
BstAUI TGTACA 2 cut(s) 537, 1513
BstBAI YACGTR 1 cut(s) 1484
BstC8I GCNNGC 3 cut(s) 115, 921, 1251
BstDEI CTNAG 3 cut(s) 713, 1055, 1448
BstF5I GGATG 2 cut(s) 526, 985
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstMAI GTCTC 2 cut(s) 85, 518
BstMWI GCNNNNNNNGC 5 cut(s) 401, 467, 476, 1374, 1426
BstNI CCWGG 3 cut(s) 880, 1023, 1593
BstNSI RCATGY 1 cut(s) 923
BstSCI CCNGG 4 cut(s) 299, 878, 1021, 1591
BstSFI CTRYAG 3 cut(s) 382, 756, 1200
BstV1I GCAGC 6 cut(s) 396, 466, 696, 1091, 1165, 1332
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BstZ17I GTATAC 1 cut(s) 1481
BsuI GTATCC 1 cut(s) 388
BtgZI GCGATG 1 cut(s) 1502
BtsCI GGATG 2 cut(s) 526, 985
BtsI GCAGTG 2 cut(s) 168, 1044
BtsIMutI CAGTG 8 cut(s) 168, 223, 256, 840, 1038, 1044, 1308, 1509
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 3 cut(s) 115, 921, 1251
CciI TCATGA 2 cut(s) 1263, 1456
CfoI GCGC 1 cut(s) 103
CseI GACGC 3 cut(s) 628, 1454, 1541
Csp6I GTAC 3 cut(s) 369, 538, 1514
CviAII CATG 7 cut(s) 19, 688, 787, 920, 1264, 1457, 1549
CviQI GTAC 3 cut(s) 369, 538, 1514
DdeI CTNAG 3 cut(s) 713, 1055, 1448
DraIII CACNNNGTG 1 cut(s) 889
Eam1104I CTCTTC 1 cut(s) 1069
EarI CTCTTC 1 cut(s) 1069
Eco130I CCWWGG 1 cut(s) 984
Eco31I GGTCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 1458
EcoRII CCWGG 3 cut(s) 878, 1021, 1591
EcoT14I CCWWGG 1 cut(s) 984
ErhI CCWWGG 1 cut(s) 984
FaeI CATG 7 cut(s) 22, 691, 790, 923, 1267, 1460, 1552
FalI AAGNNNNNCTT 2 cut(s) 1066, 1098
FaqI GGGAC 1 cut(s) 853
FatI CATG 7 cut(s) 18, 687, 786, 919, 1263, 1456, 1548
FbaI TGATCA 3 cut(s) 64, 213, 1266
FblI GTMKAC 2 cut(s) 191, 1480
Fnu4HI GCNGC 6 cut(s) 385, 480, 710, 1080, 1154, 1346
FokI GGATG 2 cut(s) 533, 992
Fsp4HI GCNGC 6 cut(s) 385, 480, 710, 1080, 1154, 1346
FspBI CTAG 1 cut(s) 692
GlaI GCGC 1 cut(s) 102
GluI GCNGC 6 cut(s) 385, 480, 710, 1080, 1154, 1346
GsuI CTGGAG 2 cut(s) 216, 1133
HaeII RGCGCY 1 cut(s) 104
HapII CCGG 2 cut(s) 300, 1556
HgaI GACGC 3 cut(s) 628, 1454, 1541
HhaI GCGC 1 cut(s) 103
Hin1II CATG 7 cut(s) 22, 691, 790, 923, 1267, 1460, 1552
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 9 cut(s) 7, 145, 161, 488, 636, 906, 1005, 1433, 1498
HpaI GTTAAC 1 cut(s) 568
HpaII CCGG 2 cut(s) 300, 1556
HphI GGTGA 5 cut(s) 34, 166, 322, 1261, 1590
Hpy166II GTNNAC 5 cut(s) 192, 233, 568, 1224, 1481
Hpy188I TCNGA 7 cut(s) 64, 213, 618, 1387, 1401, 1438, 1494
Hpy188III TCNNGA 8 cut(s) 137, 518, 604, 764, 903, 910, 1264, 1457
Hpy8I GTNNAC 5 cut(s) 192, 233, 568, 1224, 1481
Hpy99I CGWCG 1 cut(s) 1470
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 5 cut(s) 537, 542, 844, 1303, 1513
HpyCH4IV ACGT 2 cut(s) 500, 1483
HpyF10VI GCNNNNNNNGC 5 cut(s) 401, 467, 476, 1374, 1426
HpyF3I CTNAG 3 cut(s) 713, 1055, 1448
HpySE526I ACGT 2 cut(s) 500, 1483
Hsp92II CATG 7 cut(s) 22, 691, 790, 923, 1267, 1460, 1552
HspAI GCGC 1 cut(s) 101
Ksp22I TGATCA 3 cut(s) 64, 213, 1266
KspAI GTTAAC 1 cut(s) 568
LguI GCTCTTC 1 cut(s) 1069
LmnI GCTCC 1 cut(s) 108
Lsp1109I GCAGC 6 cut(s) 396, 466, 696, 1091, 1165, 1332
LweI GCATC 6 cut(s) 139, 396, 562, 771, 970, 1056
MaeI CTAG 1 cut(s) 692
MaeII ACGT 2 cut(s) 500, 1483
MaeIII GTNAC 3 cut(s) 889, 907, 1235
MboII GAAGA 7 cut(s) 125, 200, 266, 952, 1086, 1132, 1481
MfeI CAATTG 1 cut(s) 1244
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 8 cut(s) 32, 41, 334, 422, 1140, 1244, 1332, 1622
MlyI GAGTC 2 cut(s) 915, 1492
MroXI GAANNNNTTC 2 cut(s) 92, 229
MseI TTAA 3 cut(s) 294, 417, 567
MslI CAYNNNNRTG 2 cut(s) 23, 1304
MspI CCGG 2 cut(s) 300, 1556
MspR9I CCNGG 4 cut(s) 301, 880, 1023, 1593
MunI CAATTG 1 cut(s) 1244
Mva1269I GAATGC 1 cut(s) 834
MvaI CCWGG 3 cut(s) 880, 1023, 1593
MwoI GCNNNNNNNGC 5 cut(s) 401, 467, 476, 1374, 1426
NciI CCSGG 1 cut(s) 301
NlaIII CATG 7 cut(s) 22, 691, 790, 923, 1267, 1460, 1552
NmuCI GTSAC 3 cut(s) 889, 907, 1235
NspI RCATGY 1 cut(s) 923
OliI CACNNNNGTG 1 cut(s) 1304
PaeI GCATGC 1 cut(s) 923
PagI TCATGA 2 cut(s) 1263, 1456
PaqCI CACCTGC 1 cut(s) 496
PciSI GCTCTTC 1 cut(s) 1069
PcsI WCGNNNNNNNCGW 1 cut(s) 1525
PctI GAATGC 1 cut(s) 834
PdmI GAANNNNTTC 2 cut(s) 92, 229
PfeI GAWTC 7 cut(s) 7, 145, 161, 488, 636, 1005, 1433
PfoI TCCNGGA 1 cut(s) 1021
PkrI GCNGC 6 cut(s) 386, 481, 711, 1081, 1155, 1347
PleI GAGTC 2 cut(s) 914, 1492
PpsI GAGTC 2 cut(s) 914, 1492
Ppu21I YACGTR 1 cut(s) 1484
PsiI TTATAA 1 cut(s) 1215
Psp6I CCWGG 3 cut(s) 878, 1021, 1591
PspGI CCWGG 3 cut(s) 878, 1021, 1591
PstI CTGCAG 1 cut(s) 386
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 3 cut(s) 370, 539, 1515
RsaNI GTAC 3 cut(s) 369, 538, 1514
RseI CAYNNNNRTG 2 cut(s) 23, 1304
SapI GCTCTTC 1 cut(s) 1069
SaqAI TTAA 3 cut(s) 294, 417, 567
SatI GCNGC 6 cut(s) 385, 480, 710, 1080, 1154, 1346
SchI GAGTC 2 cut(s) 915, 1492
ScrFI CCNGG 4 cut(s) 301, 880, 1023, 1593
SduI GDGCHC 1 cut(s) 513
SfaNI GCATC 6 cut(s) 139, 396, 562, 771, 970, 1056
SfcI CTRYAG 3 cut(s) 382, 756, 1200
SmiMI CAYNNNNRTG 2 cut(s) 23, 1304
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SphI GCATGC 1 cut(s) 923
Sse9I AATT 8 cut(s) 32, 41, 334, 422, 1140, 1244, 1332, 1622
SsiI CCGC 1 cut(s) 1418
SspI AATATT 1 cut(s) 474
SspMI CTAG 1 cut(s) 692
StyD4I CCNGG 4 cut(s) 299, 878, 1021, 1591
StyI CCWWGG 1 cut(s) 984
TaaI ACNGT 5 cut(s) 537, 542, 844, 1303, 1513
TaiI ACGT 2 cut(s) 503, 1486
TaqI TCGA 3 cut(s) 441, 1118, 1406
TasI AATT 8 cut(s) 32, 41, 334, 422, 1140, 1244, 1332, 1622
TatI WGTACW 2 cut(s) 537, 1513
TfiI GAWTC 7 cut(s) 7, 145, 161, 488, 636, 1005, 1433
Tru1I TTAA 3 cut(s) 294, 417, 567
Tru9I TTAA 3 cut(s) 294, 417, 567
TscAI CASTG 8 cut(s) 175, 223, 256, 847, 1038, 1044, 1308, 1516
TseFI GTSAC 3 cut(s) 889, 907, 1235
TseI GCWGC 6 cut(s) 384, 479, 709, 1079, 1153, 1345
Tsp45I GTSAC 3 cut(s) 889, 907, 1235
TspDTI ATGAA 5 cut(s) 174, 328, 712, 789, 1537
TspGWI ACGGA 2 cut(s) 481, 500
TspRI CASTG 8 cut(s) 175, 223, 256, 847, 1038, 1044, 1308, 1516
XapI RAATTY 1 cut(s) 334
XceI RCATGY 1 cut(s) 923
XmiI GTMKAC 2 cut(s) 191, 1480
XmnI GAANNNNTTC 2 cut(s) 92, 229
XspI CTAG 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.