RLG00000025572

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
46778917 .. 46783541
4625 bp
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UTR
Exon/CDS
Intron
RLM00000025572

Sequence Viewer

Length: 1632 bp
ATGGCTTCTCATTTGGCCATGTTGATGACCAAGTTACCCAAATTGCAAAATCTATCTGCTTCTGATCACTCCTCTGTTGTCTCGTTGAACCTTTTCGTGGCACTACTTTGTGCTTGTATTGTGATTGGGCATCTTCTTGAGGAGAATCGGTGGGTGAATGAGTCAATCACCGCCCTTTTGATTGGAGTGTCTACTGGAGTAGTTATTCTGCTGATCAGTGGAGGAAAAAGTTCGCATCTTTTAGTATTCAGTGAAGATCTTTTCTTTATTTACCTTCTACCACCTATTATTTTTAATGCTGGGTTTCAGGTGAAAAAGAAGCAGTTTTTCCGTAATTTCATTACTATTGTAATGTTCGGTGCTATTGGTACATTAGTATCCTGCACCATCATAGCATTTGGTGCTACACAAATCTTTAAGAAATTGGACATTGGTTCGCTGGACATAGGGGATTATCTCGCAATTGGTGCAATATTTGCTGCTACGGATTCTGTATGCACGTTGCAGGTGCTCCATCAGGATGAGACTCCTTTACTGTACAGTCTTGTATTCGGCGAGGGAGTTGTTAACGATGCTACATCTGTGGTGCTTTTCAATGCTATCCAGAGCTTTGATCTAACACACCTTGATTCCAGAATCGCCTTGAAGTTTATGGGCAACTTTTTGTATTTGTTTTTTGCAAGCACCATGCTAGGAGTGATTACAGGGCTGCTAAGTGCTTTCATTATCAAAAAGCTTTATTTTGCAAGGCACTCAACAGATCGTGAGGTTGCTCTTATGATGCTCATGGCATACCTTTCATATATACTGGCTGAACTATTCTATTTGAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTGATGTCCCATTACACCTGGCACAATGTGACAGAGAGTTCAAGAGTCACAACCAAGCATGCTTTTGCAACCTTGTCATTTGTTTGCGAGACTTTTATCTTCCTCTATGTTGGTATGGATGCCTTGGACATTGAAAAGTGGAGATTTGTAAGTGATAGTCCTGGAACGTCAGTGGCAGTGAGTTCAATACTGCTAAGTCTTGTTATGCTTGGAAGAGCAGCTTTTGTTTTTCCCTTATCCTTTTTCTCAAACTTATTTAAGAAAAATCAAAGCGAGAGAATTAGCTTCCAGCAGCAAGTGGTAATATGGTGGGCTGGTCTTATGAGAGGTGCTGTGTCTATAGCGCTTGCTTATAATCAGTTTACAAGATCTGGTCACACTCAATTGCGAGCAAATGCAATCATGATCACTAGCACAATAAGTGTTGTTCTTGTCAGCACAGTGGTGTTTGGATTGATGACAAAACCTCTTATTAGATTATTGCTGCCTCATAAACAATTGACCAGCACAAACAGCATTATGTCAGACCCACCCTCTCCAAAATCAGTCATTGTTCCACTTCTTGGGCAGGATTCTGAAGCTGATCTGAGCGGTCATGAGGTGCGTCGTCCAGCCAGCATACGTGATCTTCTGACGACTCCAACACACACTGTACATCGCTACTGGCGTAAGTTTGATAATGCTTTCATGCGTCCGGTATTTGGTGGTCGGGGTTTTGTTCCCTTTGTTCCCGGCTCACCAACTGAACGGAACAACACTCAATGGCAATGA

Protein Analysis

544

Amino Acids

60.23

Weight (kDa)

8.91

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 34 - 445 5.9e-55 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1215
AarI CACCTGC 1 cut(s) 496
Acc36I ACCTGC 1 cut(s) 496
AccB7I CCANNNNNTGG 1 cut(s) 1424
AccBSI CCGCTC 1 cut(s) 1452
AccI GTMKAC 1 cut(s) 191
AciI CCGC 2 cut(s) 171, 1452
AcoI YGGCCR 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 1458
AdeI CACNNNGTG 1 cut(s) 889
AfaI GTAC 3 cut(s) 370, 539, 1515
AfeI AGCGCT 1 cut(s) 1206
AfiI CCNNNNNNNGG 3 cut(s) 97, 1424, 1562
AgsI TTSAA 6 cut(s) 88, 595, 646, 903, 995, 1047
AjnI CCWGG 2 cut(s) 878, 1021
AleI CACNNNNGTG 1 cut(s) 1304
AluBI AGCT 5 cut(s) 609, 736, 1082, 1146, 1442
AluI AGCT 5 cut(s) 609, 736, 1082, 1146, 1442
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 3 cut(s) 85, 518, 944
Aor51HI AGCGCT 1 cut(s) 1206
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 5 cut(s) 479, 709, 1079, 1153, 1345
Asp700I GAANNNNTTC 2 cut(s) 92, 229
AspLEI GCGC 1 cut(s) 1207
AsuC2I CCSGG 1 cut(s) 1593
AsuHPI GGTGA 4 cut(s) 160, 166, 322, 1590
BaeI ACNNNNGTAYC 4 cut(s) 360, 360, 393, 393
BalI TGGCCA 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 5 cut(s) 466, 696, 1091, 1165, 1332
BccI CCATC 2 cut(s) 395, 522
BciT130I CCWGG 2 cut(s) 880, 1023
BciVI GTATCC 1 cut(s) 388
BclI TGATCA 3 cut(s) 64, 213, 1266
BcnI CCSGG 1 cut(s) 1593
BcoDI GTCTC 3 cut(s) 85, 518, 944
BfaI CTAG 2 cut(s) 692, 1272
BfmI CTRYAG 1 cut(s) 1200
BfoI RGCGCY 1 cut(s) 1208
BfuAI ACCTGC 1 cut(s) 496
BfuI GTATCC 1 cut(s) 388
BglII AGATCT 2 cut(s) 256, 1229
BisI GCNGC 5 cut(s) 480, 710, 1080, 1154, 1346
BlsI GCNGC 5 cut(s) 481, 711, 1081, 1155, 1347
Bme1390I CCNGG 3 cut(s) 880, 1023, 1593
BmrFI CCNGG 3 cut(s) 880, 1023, 1593
BmsI GCATC 5 cut(s) 139, 244, 562, 771, 970
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 1593
BsaAI YACGTR 1 cut(s) 1484
BsaJI CCNNGG 1 cut(s) 984
BsaWI WCCGGW 1 cut(s) 1555
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 1424, 1562
Bse1I ACTGG 3 cut(s) 199, 813, 1529
BseBI CCWGG 2 cut(s) 880, 1023
BseDI CCNNGG 1 cut(s) 984
BseGI GGATG 2 cut(s) 526, 985
BseLI CCNNNNNNNGG 3 cut(s) 97, 1424, 1562
BseMII CTCAG 1 cut(s) 1439
BseNI ACTGG 3 cut(s) 199, 813, 1529
BseRI GAGGAG 2 cut(s) 61, 155
BseXI GCAGC 5 cut(s) 466, 696, 1091, 1165, 1332
BseYI CCCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 367
BshFI GGCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 513
BsiSI CCGG 2 cut(s) 1556, 1593
BslFI GGGAC 1 cut(s) 853
BslI CCNNNNNNNGG 3 cut(s) 97, 1424, 1562
BsmAI GTCTC 3 cut(s) 85, 518, 944
BsmFI GGGAC 1 cut(s) 853
BsmI GAATGC 1 cut(s) 834
BsnI GGCC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 513
Bsp1407I TGTACA 2 cut(s) 537, 1513
Bsp143I GATC 9 cut(s) 64, 213, 256, 613, 760, 1229, 1266, 1444, 1486
BspACI CCGC 2 cut(s) 171, 1452
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 1440
BspHI TCATGA 2 cut(s) 1263, 1456
BspMI ACCTGC 1 cut(s) 496
BspQI GCTCTTC 1 cut(s) 1069
BsrBI CCGCTC 1 cut(s) 1452
BsrGI TGTACA 2 cut(s) 537, 1513
BsrI ACTGG 3 cut(s) 199, 813, 1529
BssECI CCNNGG 1 cut(s) 984
BssMI GATC 9 cut(s) 64, 213, 256, 613, 760, 1229, 1266, 1444, 1486
BssT1I CCWWGG 1 cut(s) 984
Bst2UI CCWGG 2 cut(s) 880, 1023
Bst4CI ACNGT 5 cut(s) 537, 542, 844, 1303, 1513
Bst6I CTCTTC 1 cut(s) 1069
BstAPI GCANNNNNTGC 3 cut(s) 401, 467, 476
BstAUI TGTACA 2 cut(s) 537, 1513
BstBAI YACGTR 1 cut(s) 1484
BstC8I GCNNGC 5 cut(s) 682, 921, 1209, 1251, 1477
BstDEI CTNAG 3 cut(s) 713, 1055, 1448
BstF5I GGATG 2 cut(s) 526, 985
BstH2I RGCGCY 1 cut(s) 1208
BstHHI GCGC 1 cut(s) 1207
BstKTI GATC 9 cut(s) 67, 216, 259, 616, 763, 1232, 1269, 1447, 1489
BstMAI GTCTC 3 cut(s) 85, 518, 944
BstMBI GATC 9 cut(s) 64, 213, 256, 613, 760, 1229, 1266, 1444, 1486
BstMWI GCNNNNNNNGC 4 cut(s) 401, 467, 476, 1374
BstNI CCWGG 2 cut(s) 880, 1023
BstNSI RCATGY 1 cut(s) 923
BstSCI CCNGG 3 cut(s) 878, 1021, 1591
BstSFI CTRYAG 1 cut(s) 1200
BstV1I GCAGC 5 cut(s) 466, 696, 1091, 1165, 1332
BstX2I RGATCY 2 cut(s) 256, 1229
BstYI RGATCY 2 cut(s) 256, 1229
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 1 cut(s) 17
BtgZI GCGATG 1 cut(s) 1502
BtsCI GGATG 2 cut(s) 526, 985
BtsI GCAGTG 1 cut(s) 1044
BtsIMutI CAGTG 7 cut(s) 223, 256, 840, 1038, 1044, 1308, 1509
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 5 cut(s) 682, 921, 1209, 1251, 1477
CciI TCATGA 2 cut(s) 1263, 1456
CfoI GCGC 1 cut(s) 1207
CseI GACGC 2 cut(s) 1454, 1541
Csp6I GTAC 3 cut(s) 369, 538, 1514
CviAII CATG 7 cut(s) 19, 688, 787, 920, 1264, 1457, 1549
CviQI GTAC 3 cut(s) 369, 538, 1514
DdeI CTNAG 3 cut(s) 713, 1055, 1448
DpnI GATC 9 cut(s) 66, 215, 258, 615, 762, 1231, 1268, 1446, 1488
DpnII GATC 9 cut(s) 64, 213, 256, 613, 760, 1229, 1266, 1444, 1486
DraIII CACNNNGTG 1 cut(s) 889
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 1069
EarI CTCTTC 1 cut(s) 1069
Eco130I CCWWGG 1 cut(s) 984
Eco47III AGCGCT 1 cut(s) 1206
Eco57I CTGAAG 1 cut(s) 1458
EcoRII CCWGG 2 cut(s) 878, 1021
EcoT14I CCWWGG 1 cut(s) 984
ErhI CCWWGG 1 cut(s) 984
FaeI CATG 7 cut(s) 22, 691, 790, 923, 1267, 1460, 1552
FalI AAGNNNNNCTT 2 cut(s) 1066, 1098
FaqI GGGAC 1 cut(s) 853
FatI CATG 7 cut(s) 18, 687, 786, 919, 1263, 1456, 1548
FbaI TGATCA 3 cut(s) 64, 213, 1266
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 5 cut(s) 480, 710, 1080, 1154, 1346
FokI GGATG 2 cut(s) 533, 992
Fsp4HI GCNGC 5 cut(s) 480, 710, 1080, 1154, 1346
FspBI CTAG 2 cut(s) 692, 1272
GlaI GCGC 1 cut(s) 1206
GluI GCNGC 5 cut(s) 480, 710, 1080, 1154, 1346
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 1208
HaeIII GGCC 1 cut(s) 17
HapII CCGG 2 cut(s) 1556, 1593
HgaI GACGC 2 cut(s) 1454, 1541
HhaI GCGC 1 cut(s) 1207
Hin1II CATG 7 cut(s) 22, 691, 790, 923, 1267, 1460, 1552
Hin6I GCGC 1 cut(s) 1205
HinP1I GCGC 1 cut(s) 1205
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 9 cut(s) 145, 161, 488, 526, 629, 636, 906, 1433, 1498
HpaI GTTAAC 1 cut(s) 568
HpaII CCGG 2 cut(s) 1556, 1593
HphI GGTGA 4 cut(s) 160, 166, 322, 1590
Hpy166II GTNNAC 3 cut(s) 192, 568, 1224
Hpy188I TCNGA 5 cut(s) 64, 1387, 1438, 1449, 1494
Hpy188III TCNNGA 8 cut(s) 137, 518, 604, 633, 764, 903, 1264, 1457
Hpy8I GTNNAC 3 cut(s) 192, 568, 1224
Hpy99I CGWCG 1 cut(s) 1470
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 5 cut(s) 537, 542, 844, 1303, 1513
HpyCH4IV ACGT 3 cut(s) 500, 1028, 1483
HpyCH4V TGCA 9 cut(s) 46, 384, 470, 498, 505, 680, 746, 929, 1259
HpyF10VI GCNNNNNNNGC 4 cut(s) 401, 467, 476, 1374
HpyF3I CTNAG 3 cut(s) 713, 1055, 1448
HpySE526I ACGT 3 cut(s) 500, 1028, 1483
Hsp92II CATG 7 cut(s) 22, 691, 790, 923, 1267, 1460, 1552
HspAI GCGC 1 cut(s) 1205
Ksp22I TGATCA 3 cut(s) 64, 213, 1266
KspAI GTTAAC 1 cut(s) 568
Kzo9I GATC 9 cut(s) 64, 213, 256, 613, 760, 1229, 1266, 1444, 1486
LguI GCTCTTC 1 cut(s) 1069
LmnI GCTCC 1 cut(s) 516
Lsp1109I GCAGC 5 cut(s) 466, 696, 1091, 1165, 1332
LweI GCATC 5 cut(s) 139, 244, 562, 771, 970
MaeI CTAG 2 cut(s) 692, 1272
MaeII ACGT 3 cut(s) 500, 1028, 1483
MaeIII GTNAC 4 cut(s) 33, 889, 907, 1235
MalI GATC 9 cut(s) 66, 215, 258, 615, 762, 1231, 1268, 1446, 1488
MbiI CCGCTC 1 cut(s) 1452
MboI GATC 9 cut(s) 64, 213, 256, 613, 760, 1229, 1266, 1444, 1486
MboII GAAGA 5 cut(s) 125, 266, 952, 1086, 1481
MfeI CAATTG 3 cut(s) 462, 1244, 1358
MflI RGATCY 2 cut(s) 256, 1229
MhlI GDGCHC 1 cut(s) 513
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 7 cut(s) 41, 334, 422, 462, 1140, 1244, 1358
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 4 cut(s) 170, 520, 915, 1492
MmeI TCCRAC 1 cut(s) 1526
Mox20I TGGCCA 1 cut(s) 17
MroXI GAANNNNTTC 2 cut(s) 92, 229
MscI TGGCCA 1 cut(s) 17
MseI TTAA 4 cut(s) 294, 417, 567, 1119
MslI CAYNNNNRTG 3 cut(s) 23, 519, 1304
Msp20I TGGCCA 1 cut(s) 17
MspI CCGG 2 cut(s) 1556, 1593
MspR9I CCNGG 3 cut(s) 880, 1023, 1593
MunI CAATTG 3 cut(s) 462, 1244, 1358
Mva1269I GAATGC 1 cut(s) 834
MvaI CCWGG 2 cut(s) 880, 1023
MwoI GCNNNNNNNGC 4 cut(s) 401, 467, 476, 1374
NciI CCSGG 1 cut(s) 1593
NdeII GATC 9 cut(s) 64, 213, 256, 613, 760, 1229, 1266, 1444, 1486
NlaIII CATG 7 cut(s) 22, 691, 790, 923, 1267, 1460, 1552
NmuCI GTSAC 3 cut(s) 889, 907, 1235
NspI RCATGY 1 cut(s) 923
OliI CACNNNNGTG 1 cut(s) 1304
PaeI GCATGC 1 cut(s) 923
PagI TCATGA 2 cut(s) 1263, 1456
PaqCI CACCTGC 1 cut(s) 496
PciSI GCTCTTC 1 cut(s) 1069
PcsI WCGNNNNNNNCGW 1 cut(s) 1525
PctI GAATGC 1 cut(s) 834
PdmI GAANNNNTTC 2 cut(s) 92, 229
PfeI GAWTC 5 cut(s) 145, 488, 629, 636, 1433
PflMI CCANNNNNTGG 1 cut(s) 1424
PfoI TCCNGGA 1 cut(s) 1021
PkrI GCNGC 5 cut(s) 481, 711, 1081, 1155, 1347
PleI GAGTC 4 cut(s) 169, 520, 914, 1492
PpsI GAGTC 4 cut(s) 169, 520, 914, 1492
Ppu21I YACGTR 1 cut(s) 1484
PsiI TTATAA 1 cut(s) 1215
Psp6I CCWGG 2 cut(s) 878, 1021
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 2 cut(s) 878, 1021
PsuI RGATCY 2 cut(s) 256, 1229
RsaI GTAC 3 cut(s) 370, 539, 1515
RsaNI GTAC 3 cut(s) 369, 538, 1514
RseI CAYNNNNRTG 3 cut(s) 23, 519, 1304
SapI GCTCTTC 1 cut(s) 1069
SaqAI TTAA 4 cut(s) 294, 417, 567, 1119
SatI GCNGC 5 cut(s) 480, 710, 1080, 1154, 1346
Sau3AI GATC 9 cut(s) 64, 213, 256, 613, 760, 1229, 1266, 1444, 1486
SchI GAGTC 4 cut(s) 170, 520, 915, 1492
ScrFI CCNGG 3 cut(s) 880, 1023, 1593
SduI GDGCHC 1 cut(s) 513
SfaNI GCATC 5 cut(s) 139, 244, 562, 771, 970
SfcI CTRYAG 1 cut(s) 1200
SmiMI CAYNNNNRTG 3 cut(s) 23, 519, 1304
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SphI GCATGC 1 cut(s) 923
Sse9I AATT 7 cut(s) 41, 334, 422, 462, 1140, 1244, 1358
SsiI CCGC 2 cut(s) 171, 1452
SspI AATATT 1 cut(s) 474
SspMI CTAG 2 cut(s) 692, 1272
StyD4I CCNGG 3 cut(s) 878, 1021, 1591
StyI CCWWGG 1 cut(s) 984
TaaI ACNGT 5 cut(s) 537, 542, 844, 1303, 1513
TaiI ACGT 3 cut(s) 503, 1031, 1486
TasI AATT 7 cut(s) 41, 334, 422, 462, 1140, 1244, 1358
TatI WGTACW 2 cut(s) 537, 1513
TfiI GAWTC 5 cut(s) 145, 488, 629, 636, 1433
Tru1I TTAA 4 cut(s) 294, 417, 567, 1119
Tru9I TTAA 4 cut(s) 294, 417, 567, 1119
TscAI CASTG 7 cut(s) 223, 256, 847, 1038, 1044, 1308, 1516
TseFI GTSAC 3 cut(s) 889, 907, 1235
TseI GCWGC 5 cut(s) 479, 709, 1079, 1153, 1345
Tsp45I GTSAC 3 cut(s) 889, 907, 1235
TspDTI ATGAA 4 cut(s) 328, 712, 789, 1537
TspGWI ACGGA 3 cut(s) 320, 500, 1624
TspRI CASTG 7 cut(s) 223, 256, 847, 1038, 1044, 1308, 1516
Van91I CCANNNNNTGG 1 cut(s) 1424
XceI RCATGY 1 cut(s) 923
XmiI GTMKAC 1 cut(s) 191
XmnI GAANNNNTTC 2 cut(s) 92, 229
XspI CTAG 2 cut(s) 692, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.