RchiOBHm_Chr5g0080441

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
86448917 .. 86449177
261 bp
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UTR
Exon/CDS
Intron
PRQ35475

Sequence Viewer

Length: 261 bp
ATGACATCTTCTGAACCTTCTAGTCCTAATTCCTTCATTGTACTACTGCTCACAAACTGGCAAGATTCAATAGCCAATATCAGGTCCGTGGACATATCTCGTCCTACTAGTTTAAGAATACTCTTAAGCACTCCGTCTCAAATTGTCGACTATTATTGGCGAAAATTTGACAATGCCTTCATGCGACCTGTTTTTGCAGGCGGGGTTTTGTACCCTTCCTTCCATAATCACCTGTTGAACCAAATAGTGACTACTGGGTAG

Protein Analysis

86

Amino Acids

9.74

Weight (kDa)

8.23

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 147
AciI CCGC 1 cut(s) 201
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 2 cut(s) 42, 212
AfiI CCNNNNNNNGG 1 cut(s) 81
AflII CTTAAG 1 cut(s) 124
AgsI TTSAA 2 cut(s) 69, 238
AhlI ACTAGT 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 221
AvaII GGWCC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BcoDI GTCTC 1 cut(s) 141
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 2 cut(s) 21, 108
BfrI CTTAAG 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse1I ACTGG 2 cut(s) 62, 259
BseDI CCNNGG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 81
BseNI ACTGG 2 cut(s) 62, 259
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 141
BsmBI CGTCTC 1 cut(s) 141
BspACI CCGC 1 cut(s) 201
BspTI CTTAAG 1 cut(s) 124
BsrI ACTGG 2 cut(s) 62, 259
BssECI CCNNGG 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 199
BstDSI CCRYGG 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 84
Csp6I GTAC 2 cut(s) 41, 211
CviAII CATG 1 cut(s) 181
CviJI RGCY 1 cut(s) 74
CviKI_1 RGCY 1 cut(s) 74
CviQI GTAC 2 cut(s) 41, 211
Eco47I GGWCC 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 1 cut(s) 184
FaiI YATR 3 cut(s) 95, 182, 225
FatI CATG 1 cut(s) 180
FauI CCCGC 1 cut(s) 194
FblI GTMKAC 1 cut(s) 147
FspBI CTAG 2 cut(s) 21, 108
Hin1II CATG 1 cut(s) 184
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 65
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 91, 148
Hpy188I TCNGA 1 cut(s) 13
Hpy8I GTNNAC 2 cut(s) 91, 148
HpyAV CCTTC 5 cut(s) 27, 43, 187, 225, 229
HpyCH4V TGCA 1 cut(s) 197
Hsp92II CATG 1 cut(s) 184
LpnPI CCDG 6 cut(s) 43, 67, 183, 201, 240, 245
MaeI CTAG 2 cut(s) 21, 108
MaeIII GTNAC 1 cut(s) 247
MluCI AATT 3 cut(s) 28, 141, 164
MseI TTAA 2 cut(s) 113, 125
MspCI CTTAAG 1 cut(s) 124
NlaIII CATG 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 84
RsaI GTAC 2 cut(s) 42, 212
RsaNI GTAC 2 cut(s) 41, 211
SalI GTCGAC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 113, 125
Sau96I GGNCC 1 cut(s) 84
SetI ASST 4 cut(s) 19, 86, 190, 234
SinI GGWCC 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
SpeI ACTAGT 1 cut(s) 107
Sse9I AATT 3 cut(s) 28, 141, 164
SsiI CCGC 1 cut(s) 201
SspMI CTAG 2 cut(s) 21, 108
TaqI TCGA 1 cut(s) 147
TasI AATT 3 cut(s) 28, 141, 164
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 113, 125
Tru9I TTAA 2 cut(s) 113, 125
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 25, 169
TspGWI ACGGA 2 cut(s) 76, 123
Vha464I CTTAAG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 2 cut(s) 21, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.