Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001413

Physical Location & Seq

Genomic Coordinates Reverse (-)

39583342 .. 39588979

Gene Structure 5638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG231400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCGTTGGATTTGAGCTCAATGGCGTCGGAATCGGTGGGAATGTTGAACACTTCCGATCATACTTCGGTTGTGTCCATGAACCTCTTTGTGGCGCTGCTCTGCGCTTGTATATTGCTTGGACATTTGCTGGAGGAGAGTCGATGGATGAATGAGTCCATTACGGCCCTTGCGATTGGATTGTGCACTGGGATTGTTATATTGCTGACCACAAAAGGGAAAAGCTCTCATTTGTTAGTGTTTAGTGAAGATCTTTTCTTCATCTATCTGCTTCCTCCTATCATTTTCAATGCCGGGTTCCAAGTGAAGAAGAAGCAATTTTTTCGTAACTTCATGACAATCATGATGTTTGGGGCTATTGGCACTCTCATATCCTTTGCCACCATATCCTTAGGTGCTATGCACTTTTTCCGCAAGTTCAGCATTGGTGACCTCAACATCGGAGATTATCTCGCACTTGGAGCAATATTTTCTGCAACCGATTCTGTTTGCACCTTGCAGGTGCTTAATCAAGATGAGACACCTTTGTTATACAGTCTGGTTTTTGGGGAAGGTGTAGTCAATGATGCTACATCAGTCGTGCTTTTCAATGCAATCCAGAGCTTTGACCTCTCCAACATCAATACAAGCACTGTTATGCAGTTTATTGGAAACTTTTTATATCTATTTGCTACAAGTACAATGCTGGGAGTTGTAGCTGGACTACTTAGTGCGTATGTAATTAGAAAGCTCTATTTTGGCAGACACTCAACTGATCGTGAAGTTGCTCTTATGATCCTCATGGCTTACCTTTCGTACATGCTAGCTGAACTGTTTTATTTAAGTGCCATTCTCACTGTGTTCTTTTGTGGAATTGTTATGTCTCACTACACATGGCATAATGTGACTGAAAGTTCAAGAGTGACAACTAAGCATGCTTTTGCCACTCTATCATTTGTTGCTGAGATTTTTATCTTTCTTTACGTTGGTATGGACGCCTTAGACATTGACAAGTGGAGATTTGTGAGTGATAGCCCGGGAAAATCCTTAGCGGTGAGTTCAATACTCTTGGCACTGGTTATGGTTGGAAGAGCAGCCTTCGTTTTCCCCTTATCTTTCTTATCCAACTTGACCAAGAAATCTCCACAAGACAAGATCCATTTGAAGCAACAAGTAGGAGTTTCGCCATTTATGTGTTTTCATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

395

Amino Acids

43.67

Weight (kDa)

6.35

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	32 - 378	5.3e-48	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05030 AT3G05030 AT3G05030 AT3G05030 AT5G27150
fragaria_vesca	FvH4_4g17120 FvH4_4g17120 FvH4_6g04140
malus_domestica	MD00G1051300.v1.1 MD12G1232400.v1.1 MD13G1174300.v1.1 MD16G1175800.v1.1
prunus_persica	Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.6G335800_v2.0.a1
pyrus_communis	pycom12g21480 pycom13g14990 pycom16g14730
rosa_chinensis	RchiOBHm_Chr3g0452721 RchiOBHm_Chr4g0420901 RchiOBHm_Chr5g0080441
rosa_laevigata	RLG00000007726 RLG00000025572
rosa_multiflora	Rmu_sc0002006.1_g000006
rosa_roxburghii	Rroxscaffold_5G00363300 Rroxscaffold_6G00429730
rosa_rugosa	Rorug02G0642900 Rorug02G0642900 Rorug04G0166900 Rorug04G0167000 Rorug04G0167100
rosa_samantha	Rh3AG045100 Rh3BG047600 Rh3CG046100 Rh3DG046400 Rh4BG231400 Rh4DG226500
rosa_wichuraiana	Rw3G003530 Rw4G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	490
AciI	CCGC	2 cut(s)	412, 1031
AclWI	GGATC	2 cut(s)	769, 1129
AcyI	GRCGYC	2 cut(s)	26, 975
AfaI	GTAC	2 cut(s)	679, 797
AfiI	CCNNNNNNNGG	2 cut(s)	91, 216
AgsI	TTSAA	6 cut(s)	49, 289, 589, 897, 1041, 1144
AluBI	AGCT	6 cut(s)	18, 225, 603, 698, 730, 806
AluI	AGCT	6 cut(s)	18, 225, 603, 698, 730, 806
Alw21I	GWGCWC	2 cut(s)	20, 188
Alw26I	GTCTC	2 cut(s)	512, 867
Alw44I	GTGCAC	1 cut(s)	184
AlwI	GGATC	2 cut(s)	769, 1129
Ama87I	CYCGRG	1 cut(s)	1015
AoxI	GGCC	1 cut(s)	165
ApaLI	GTGCAC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	97, 1073
AspLEI	GCGC	2 cut(s)	97, 107
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	3 cut(s)	295, 1016, 1017
AsuHPI	GGTGA	2 cut(s)	440, 1045
AsuNHI	GCTAGC	1 cut(s)	802
AvaI	CYCGRG	1 cut(s)	1015
AxyI	CCTNAGG	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	20, 188
BbvI	GCAGC	2 cut(s)	84, 1085
BccI	CCATC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	180
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BcnI	CCSGG	3 cut(s)	295, 1016, 1017
BcoDI	GTCTC	2 cut(s)	512, 867
BfaI	CTAG	1 cut(s)	803
BfoI	RGCGCY	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	490
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	2 cut(s)	98, 1074
BlsI	GCNGC	2 cut(s)	99, 1075
Bme1390I	CCNGG	3 cut(s)	295, 1016, 1017
BmeT110I	CYCGRG	1 cut(s)	1015
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	3 cut(s)	295, 1016, 1017
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	556
BmtI	GCTAGC	1 cut(s)	806
BmuI	ACTGGG	1 cut(s)	198
BplI	GAGNNNNNCTC	2 cut(s)	435, 467
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	1027
BpuMI	CCSGG	3 cut(s)	295, 1016, 1017
BsaBI	GATNNNNATC	1 cut(s)	950
BsaHI	GRCGYC	2 cut(s)	26, 975
BsaJI	CCNNGG	1 cut(s)	1015
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 216
Bse1I	ACTGG	2 cut(s)	193, 1059
Bse21I	CCTNAGG	1 cut(s)	391
Bse8I	GATNNNNATC	1 cut(s)	950
BseDI	CCNNGG	1 cut(s)	1015
BseGI	GGATG	1 cut(s)	153
BseJI	GATNNNNATC	1 cut(s)	950
BseLI	CCNNNNNNNGG	2 cut(s)	91, 216
BseMII	CTCAG	1 cut(s)	933
BseNI	ACTGG	2 cut(s)	193, 1059
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	84, 1085
BseYI	CCCAGC	1 cut(s)	685
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	2 cut(s)	20, 188
BsiHKCI	CYCGRG	1 cut(s)	1015
BsiSI	CCGG	2 cut(s)	294, 1016
BslI	CCNNNNNNNGG	2 cut(s)	91, 216
BsmAI	GTCTC	2 cut(s)	512, 867
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	1015
Bsp1286I	GDGCHC	2 cut(s)	20, 188
Bsp143I	GATC	5 cut(s)	58, 250, 754, 774, 1134
BspACI	CCGC	2 cut(s)	412, 1031
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	934
BspHI	TCATGA	2 cut(s)	333, 342
BspLI	GGNNCC	1 cut(s)	299
BspMI	ACCTGC	1 cut(s)	490
BspOI	GCTAGC	1 cut(s)	806
BspPI	GGATC	2 cut(s)	769, 1129
BspQI	GCTCTTC	1 cut(s)	1063
BsrI	ACTGG	2 cut(s)	193, 1059
BssECI	CCNNGG	1 cut(s)	1015
BssMI	GATC	5 cut(s)	58, 250, 754, 774, 1134
BssNI	GRCGYC	2 cut(s)	26, 975
Bst4CI	ACNGT	4 cut(s)	536, 634, 813, 838
Bst6I	CTCTTC	1 cut(s)	1063
BstACI	GRCGYC	2 cut(s)	26, 975
BstC8I	GCNNGC	2 cut(s)	804, 915
BstDEI	CTNAG	6 cut(s)	391, 707, 909, 942, 979, 1027
BstEII	GGTNACC	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	97, 107
BstKTI	GATC	5 cut(s)	61, 253, 757, 777, 1137
BstMAI	GTCTC	2 cut(s)	512, 867
BstMBI	GATC	5 cut(s)	58, 250, 754, 774, 1134
BstMWI	GCNNNNNNNGC	2 cut(s)	420, 461
BstNSI	RCATGY	2 cut(s)	802, 917
BstPI	GGTNACC	1 cut(s)	428
BstSCI	CCNGG	3 cut(s)	293, 1014, 1015
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	84, 1085
BstX2I	RGATCY	2 cut(s)	250, 1134
BstYI	RGATCY	2 cut(s)	250, 1134
Bsu36I	CCTNAGG	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	153
BtsIMutI	CAGTG	4 cut(s)	186, 630, 834, 1052
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	2 cut(s)	804, 915
CciI	TCATGA	2 cut(s)	333, 342
CfoI	GCGC	2 cut(s)	97, 107
Cfr13I	GGNCC	1 cut(s)	166
Cfr9I	CCCGGG	1 cut(s)	1015
CseI	GACGC	2 cut(s)	15, 983
Csp6I	GTAC	2 cut(s)	678, 796
CviAII	CATG	7 cut(s)	79, 334, 343, 781, 799, 873, 914
CviQI	GTAC	2 cut(s)	678, 796
DdeI	CTNAG	6 cut(s)	391, 707, 909, 942, 979, 1027
DpnI	GATC	5 cut(s)	60, 252, 756, 776, 1136
DpnII	GATC	5 cut(s)	58, 250, 754, 774, 1134
Eam1104I	CTCTTC	1 cut(s)	1063
EarI	CTCTTC	1 cut(s)	1063
Ecl136II	GAGCTC	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco81I	CCTNAGG	1 cut(s)	391
Eco88I	CYCGRG	1 cut(s)	1015
Eco91I	GGTNACC	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	7 cut(s)	82, 337, 346, 784, 802, 876, 917
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FatI	CATG	7 cut(s)	78, 333, 342, 780, 798, 872, 913
Fnu4HI	GCNGC	2 cut(s)	98, 1074
FokI	GGATG	1 cut(s)	160
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	2 cut(s)	98, 1074
FspBI	CTAG	1 cut(s)	803
GlaI	GCGC	2 cut(s)	96, 106
GluI	GCNGC	2 cut(s)	98, 1074
GsaI	CCCAGC	1 cut(s)	689
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	2 cut(s)	294, 1016
HgaI	GACGC	2 cut(s)	15, 983
HhaI	GCGC	2 cut(s)	97, 107
Hin1I	GRCGYC	2 cut(s)	26, 975
Hin1II	CATG	7 cut(s)	82, 337, 346, 784, 802, 876, 917
Hin6I	GCGC	2 cut(s)	95, 105
HinP1I	GCGC	2 cut(s)	95, 105
HinfI	GANTC	4 cut(s)	32, 139, 155, 482
HpaII	CCGG	2 cut(s)	294, 1016
HphI	GGTGA	2 cut(s)	440, 1045
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	3 cut(s)	31, 58, 443
Hpy188III	TCNNGA	6 cut(s)	334, 343, 512, 598, 758, 897
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	545, 1087
HpyCH4III	ACNGT	4 cut(s)	536, 634, 813, 838
HpyCH4IV	ACGT	1 cut(s)	963
HpyCH4V	TGCA	7 cut(s)	186, 403, 476, 492, 499, 593, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	420, 461
HpyF3I	CTNAG	6 cut(s)	391, 707, 909, 942, 979, 1027
HpySE526I	ACGT	1 cut(s)	963
Hsp92I	GRCGYC	2 cut(s)	26, 975
Hsp92II	CATG	7 cut(s)	82, 337, 346, 784, 802, 876, 917
HspAI	GCGC	2 cut(s)	95, 105
Kzo9I	GATC	5 cut(s)	58, 250, 754, 774, 1134
LguI	GCTCTTC	1 cut(s)	1063
LmnI	GCTCC	1 cut(s)	461
Lsp1109I	GCAGC	2 cut(s)	84, 1085
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	1 cut(s)	803
MaeII	ACGT	1 cut(s)	963
MaeIII	GTNAC	4 cut(s)	326, 428, 883, 901
MalI	GATC	5 cut(s)	60, 252, 756, 776, 1136
MboI	GATC	5 cut(s)	58, 250, 754, 774, 1134
MboII	GAAGA	5 cut(s)	250, 260, 319, 322, 1080
MflI	RGATCY	2 cut(s)	250, 1134
MhlI	GDGCHC	2 cut(s)	20, 188
MluCI	AATT	3 cut(s)	317, 720, 852
MlyI	GAGTC	2 cut(s)	148, 164
MmeI	TCCRAC	4 cut(s)	9, 639, 1045, 1128
MnlI	CCTC	6 cut(s)	95, 127, 285, 443, 620, 788
MseI	TTAA	2 cut(s)	507, 821
MslI	CAYNNNNRTG	2 cut(s)	635, 1171
MspI	CCGG	2 cut(s)	294, 1016
MspR9I	CCNGG	3 cut(s)	295, 1016, 1017
MwoI	GCNNNNNNNGC	2 cut(s)	420, 461
NciI	CCSGG	3 cut(s)	295, 1016, 1017
NdeII	GATC	5 cut(s)	58, 250, 754, 774, 1134
NheI	GCTAGC	1 cut(s)	802
NlaIII	CATG	7 cut(s)	82, 337, 346, 784, 802, 876, 917
NlaIV	GGNNCC	1 cut(s)	299
NmuCI	GTSAC	3 cut(s)	428, 883, 901
NspI	RCATGY	2 cut(s)	802, 917
PaeI	GCATGC	1 cut(s)	917
PagI	TCATGA	2 cut(s)	333, 342
PaqCI	CACCTGC	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	1063
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	32, 482
PkrI	GCNGC	2 cut(s)	99, 1075
PleI	GAGTC	2 cut(s)	147, 163
PpsI	GAGTC	2 cut(s)	147, 163
Psp124BI	GAGCTC	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	428
PspFI	CCCAGC	1 cut(s)	685
PspN4I	GGNNCC	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	250, 1134
RsaI	GTAC	2 cut(s)	679, 797
RsaNI	GTAC	2 cut(s)	678, 796
RseI	CAYNNNNRTG	2 cut(s)	635, 1171
SacI	GAGCTC	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	1063
SaqAI	TTAA	2 cut(s)	507, 821
SatI	GCNGC	2 cut(s)	98, 1074
Sau3AI	GATC	5 cut(s)	58, 250, 754, 774, 1134
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	2 cut(s)	148, 164
ScrFI	CCNGG	3 cut(s)	295, 1016, 1017
SduI	GDGCHC	2 cut(s)	20, 188
SfaNI	GCATC	1 cut(s)	556
SmaI	CCCGGG	1 cut(s)	1017
SmiMI	CAYNNNNRTG	2 cut(s)	635, 1171
SphI	GCATGC	1 cut(s)	917
Sse9I	AATT	3 cut(s)	317, 720, 852
SsiI	CCGC	2 cut(s)	412, 1031
SspI	AATATT	1 cut(s)	468
SspMI	CTAG	1 cut(s)	803
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	3 cut(s)	293, 1014, 1015
TaaI	ACNGT	4 cut(s)	536, 634, 813, 838
TaiI	ACGT	1 cut(s)	966
TaqI	TCGA	1 cut(s)	142
TasI	AATT	3 cut(s)	317, 720, 852
TatI	WGTACW	1 cut(s)	677
TfiI	GAWTC	2 cut(s)	32, 482
Tru1I	TTAA	2 cut(s)	507, 821
Tru9I	TTAA	2 cut(s)	507, 821
TscAI	CASTG	4 cut(s)	193, 637, 841, 1059
TseFI	GTSAC	3 cut(s)	428, 883, 901
TseI	GCWGC	2 cut(s)	97, 1073
Tsp45I	GTSAC	3 cut(s)	428, 883, 901
TspDTI	ATGAA	5 cut(s)	95, 164, 250, 322, 1169
TspMI	CCCGGG	1 cut(s)	1015
TspRI	CASTG	4 cut(s)	193, 637, 841, 1059
VneI	GTGCAC	1 cut(s)	184
XceI	RCATGY	2 cut(s)	802, 917
XmaI	CCCGGG	1 cut(s)	1015
XspI	CTAG	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.