Rh3CG046100

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
3082895 .. 3088787
5893 bp
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UTR
Exon/CDS
Intron
Rh3CG046100.1

Sequence Viewer

Length: 1344 bp
ATGGCTTCTCATTTGGCCATGTTGATGACCAAGTTACCCAAATTGCAAAATCTATCTGCTTCTGATCACTCCTCTGTGGTCTCGTTGAACCTTTTCGTGGCACTACTTTGTGCTTGTATTGTGATTGGGCATCTTCTTGAGGAGAATCGGTGGGTGAACGAGTCAATCACCGCCCTTTTGATTGGGGTGTCTACTGGAGTACTTATTCTTCTGATCAGTGGAGGAAAAAGTTCGCATCTTTTAGTATTCAGTGAAGATCTTTTCTTTATTTACCTTCTACCACCTATTATTTTTAATGCCGGGTTTCAGGTGAAAAAGAAGCAGTTTTTCCGTAATTTCATTACTATTGTAATGTTCGGTGCTATTGGTACATTAGTATCCTGCACCATCATAGCATTTGGTGCTACACAAATCTTTAAGAAATTGGACATTGGTTCGCTGGACATAGGGGATTATCTCGCAATTGGTGCAATATTTGCTGCTACGGATTCTGTATGCACGTTGCAGGTGCTCCATCAGGATGAGACTCCTTTACTGTACAGTCTTGTATTCGGCGAGGGAGTTGTTAACGATGCTACATCTGTGGTGCTTTTCAATGCTATCCAGAGCTTTGATCTAACACACCTTGATTCCAGAATCGCCTTGAAGTTTATGGGCAACTTTTTGTATTTGTTTTTTGCAAGCACCATGCTAGGAGTGATTACAGGGCTGCTAAGTGCTTTCATTATCAAAAAGCTTTATTTTGCAAGGCACTCAACAGATCGTGAGGTCGCTCTTATGATGCTCATGGCATACCTTTCATATATACTGGCTGAACTATTCTATTTGAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTGATGTCCCATTACACCTGGCACAATGTGACAGAGAGTTCAAGAGTCACGACCAAGCATGCTTTTGCAACCTTGTCATTTGTTTGCGAGACTTTTATCTTCCTCTATGTTGGTATGGATGCCTTGGACATTGAAAAGTGGAGATTTGTAAGTGATAGTCCTGGAACGTCAGTGGCAGTGAGTTCAATACTGCTAAGTCTTGTTATGCTTGGAAGAGCAGCTTTTGTTTTTCCTTTATCCTTTTTCTCAAACTTATTTAAGAAAAATCAAAGCGAGAAAATTAGCCTCCAGCAGCAAGTGGTAATATGGTGGGCTGGTCTTATGAGAGGTGCTGTGTCTATAGCGCTTGCTTATAATCAGTTTACAAGATCTGGTCACACTCAATTGCGAGCAAATGCAATCATGATCACTAGCACAATAAGTGTTGTTCTTGTCAGCACAGTGGTAAGGCAGCTGCTCCCTATATTGTGTATTGTGACTTGA

Protein Analysis

447

Amino Acids

49.36

Weight (kDa)

8.11

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 34 - 436 4.3e-53 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1215
AarI CACCTGC 1 cut(s) 496
Acc36I ACCTGC 1 cut(s) 496
AccI GTMKAC 1 cut(s) 191
AciI CCGC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 15
AdeI CACNNNGTG 1 cut(s) 889
AfaI GTAC 3 cut(s) 201, 370, 539
AfeI AGCGCT 1 cut(s) 1206
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 6 cut(s) 88, 595, 646, 903, 995, 1047
AjnI CCWGG 2 cut(s) 878, 1021
AluBI AGCT 4 cut(s) 609, 736, 1082, 1315
AluI AGCT 4 cut(s) 609, 736, 1082, 1315
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 3 cut(s) 85, 518, 944
Aor51HI AGCGCT 1 cut(s) 1206
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 6 cut(s) 479, 709, 1079, 1153, 1312, 1315
Asp700I GAANNNNTTC 2 cut(s) 92, 229
AspLEI GCGC 1 cut(s) 1207
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 3 cut(s) 160, 166, 322
BaeI ACNNNNGTAYC 4 cut(s) 360, 360, 393, 393
BalI TGGCCA 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 6 cut(s) 466, 696, 1091, 1165, 1302, 1324
BccI CCATC 2 cut(s) 395, 522
BciT130I CCWGG 2 cut(s) 880, 1023
BciVI GTATCC 1 cut(s) 388
BclI TGATCA 3 cut(s) 64, 213, 1266
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 3 cut(s) 85, 518, 944
BfaI CTAG 2 cut(s) 692, 1272
BfmI CTRYAG 1 cut(s) 1200
BfoI RGCGCY 1 cut(s) 1208
BfuAI ACCTGC 1 cut(s) 496
BfuI GTATCC 1 cut(s) 388
BglII AGATCT 2 cut(s) 256, 1229
BisI GCNGC 6 cut(s) 480, 710, 1080, 1154, 1313, 1316
BlsI GCNGC 6 cut(s) 481, 711, 1081, 1155, 1314, 1317
BmcAI AGTACT 1 cut(s) 201
Bme1390I CCNGG 3 cut(s) 301, 880, 1023
BmrFI CCNGG 3 cut(s) 301, 880, 1023
BmsI GCATC 5 cut(s) 139, 244, 562, 771, 970
BpmI CTGGAG 2 cut(s) 216, 1133
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 301
BsaI GGTCTC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 984
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 2 cut(s) 199, 813
BseBI CCWGG 2 cut(s) 880, 1023
BseDI CCNNGG 1 cut(s) 984
BseGI GGATG 2 cut(s) 526, 985
BseLI CCNNNNNNNGG 1 cut(s) 97
BseNI ACTGG 2 cut(s) 199, 813
BseRI GAGGAG 2 cut(s) 61, 155
BseXI GCAGC 6 cut(s) 466, 696, 1091, 1165, 1302, 1324
BsgI GTGCAG 1 cut(s) 367
BshFI GGCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 513
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 853
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 3 cut(s) 85, 518, 944
BsmFI GGGAC 1 cut(s) 853
BsmI GAATGC 1 cut(s) 834
BsnI GGCC 1 cut(s) 17
Bso31I GGTCTC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 513
Bsp1407I TGTACA 1 cut(s) 537
Bsp143I GATC 7 cut(s) 64, 213, 256, 613, 760, 1229, 1266
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 17
BspHI TCATGA 1 cut(s) 1263
BspMI ACCTGC 1 cut(s) 496
BspQI GCTCTTC 1 cut(s) 1069
BspTNI GGTCTC 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 537
BsrI ACTGG 2 cut(s) 199, 813
BssECI CCNNGG 1 cut(s) 984
BssMI GATC 7 cut(s) 64, 213, 256, 613, 760, 1229, 1266
BssT1I CCWWGG 1 cut(s) 984
Bst2UI CCWGG 2 cut(s) 880, 1023
Bst4CI ACNGT 4 cut(s) 537, 542, 844, 1303
Bst6I CTCTTC 1 cut(s) 1069
BstAPI GCANNNNNTGC 3 cut(s) 401, 467, 476
BstAUI TGTACA 1 cut(s) 537
BstC8I GCNNGC 4 cut(s) 682, 921, 1209, 1251
BstDEI CTNAG 2 cut(s) 713, 1055
BstF5I GGATG 2 cut(s) 526, 985
BstH2I RGCGCY 1 cut(s) 1208
BstHHI GCGC 1 cut(s) 1207
BstKTI GATC 7 cut(s) 67, 216, 259, 616, 763, 1232, 1269
BstMAI GTCTC 3 cut(s) 85, 518, 944
BstMBI GATC 7 cut(s) 64, 213, 256, 613, 760, 1229, 1266
BstMWI GCNNNNNNNGC 3 cut(s) 401, 467, 476
BstNI CCWGG 2 cut(s) 880, 1023
BstNSI RCATGY 1 cut(s) 923
BstSCI CCNGG 3 cut(s) 299, 878, 1021
BstSFI CTRYAG 1 cut(s) 1200
BstV1I GCAGC 6 cut(s) 466, 696, 1091, 1165, 1302, 1324
BstX2I RGATCY 2 cut(s) 256, 1229
BstYI RGATCY 2 cut(s) 256, 1229
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 1 cut(s) 17
BtsCI GGATG 2 cut(s) 526, 985
BtsI GCAGTG 1 cut(s) 1044
BtsIMutI CAGTG 6 cut(s) 223, 256, 840, 1038, 1044, 1308
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 4 cut(s) 682, 921, 1209, 1251
CciI TCATGA 1 cut(s) 1263
CfoI GCGC 1 cut(s) 1207
Csp6I GTAC 3 cut(s) 200, 369, 538
CviAII CATG 5 cut(s) 19, 688, 787, 920, 1264
CviQI GTAC 3 cut(s) 200, 369, 538
DdeI CTNAG 2 cut(s) 713, 1055
DpnI GATC 7 cut(s) 66, 215, 258, 615, 762, 1231, 1268
DpnII GATC 7 cut(s) 64, 213, 256, 613, 760, 1229, 1266
DraIII CACNNNGTG 1 cut(s) 889
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 1069
EarI CTCTTC 1 cut(s) 1069
Eco130I CCWWGG 1 cut(s) 984
Eco31I GGTCTC 1 cut(s) 85
Eco47III AGCGCT 1 cut(s) 1206
EcoRII CCWGG 2 cut(s) 878, 1021
EcoT14I CCWWGG 1 cut(s) 984
ErhI CCWWGG 1 cut(s) 984
FaeI CATG 5 cut(s) 22, 691, 790, 923, 1267
FalI AAGNNNNNCTT 2 cut(s) 1066, 1098
FaqI GGGAC 1 cut(s) 853
FatI CATG 5 cut(s) 18, 687, 786, 919, 1263
FbaI TGATCA 3 cut(s) 64, 213, 1266
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 6 cut(s) 480, 710, 1080, 1154, 1313, 1316
FokI GGATG 2 cut(s) 533, 992
Fsp4HI GCNGC 6 cut(s) 480, 710, 1080, 1154, 1313, 1316
FspBI CTAG 2 cut(s) 692, 1272
GlaI GCGC 1 cut(s) 1206
GluI GCNGC 6 cut(s) 480, 710, 1080, 1154, 1313, 1316
GsuI CTGGAG 2 cut(s) 216, 1133
HaeII RGCGCY 1 cut(s) 1208
HaeIII GGCC 1 cut(s) 17
HapII CCGG 1 cut(s) 300
HhaI GCGC 1 cut(s) 1207
Hin1II CATG 5 cut(s) 22, 691, 790, 923, 1267
Hin6I GCGC 1 cut(s) 1205
HinP1I GCGC 1 cut(s) 1205
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 7 cut(s) 145, 161, 488, 526, 629, 636, 906
HpaI GTTAAC 1 cut(s) 568
HpaII CCGG 1 cut(s) 300
HphI GGTGA 3 cut(s) 160, 166, 322
Hpy166II GTNNAC 4 cut(s) 157, 192, 568, 1224
Hpy188I TCNGA 2 cut(s) 64, 213
Hpy188III TCNNGA 8 cut(s) 137, 518, 604, 633, 764, 903, 910, 1264
Hpy8I GTNNAC 4 cut(s) 157, 192, 568, 1224
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 4 cut(s) 537, 542, 844, 1303
HpyCH4IV ACGT 2 cut(s) 500, 1028
HpyCH4V TGCA 9 cut(s) 46, 384, 470, 498, 505, 680, 746, 929, 1259
HpyF10VI GCNNNNNNNGC 3 cut(s) 401, 467, 476
HpyF3I CTNAG 2 cut(s) 713, 1055
HpySE526I ACGT 2 cut(s) 500, 1028
Hsp92II CATG 5 cut(s) 22, 691, 790, 923, 1267
HspAI GCGC 1 cut(s) 1205
Ksp22I TGATCA 3 cut(s) 64, 213, 1266
KspAI GTTAAC 1 cut(s) 568
Kzo9I GATC 7 cut(s) 64, 213, 256, 613, 760, 1229, 1266
LguI GCTCTTC 1 cut(s) 1069
LmnI GCTCC 2 cut(s) 516, 1323
Lsp1109I GCAGC 6 cut(s) 466, 696, 1091, 1165, 1302, 1324
LweI GCATC 5 cut(s) 139, 244, 562, 771, 970
MaeI CTAG 2 cut(s) 692, 1272
MaeII ACGT 2 cut(s) 500, 1028
MaeIII GTNAC 5 cut(s) 33, 889, 907, 1235, 1336
MalI GATC 7 cut(s) 66, 215, 258, 615, 762, 1231, 1268
MboI GATC 7 cut(s) 64, 213, 256, 613, 760, 1229, 1266
MboII GAAGA 5 cut(s) 125, 200, 266, 952, 1086
MfeI CAATTG 2 cut(s) 462, 1244
MflI RGATCY 2 cut(s) 256, 1229
MhlI GDGCHC 1 cut(s) 513
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 6 cut(s) 41, 334, 422, 462, 1140, 1244
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 3 cut(s) 170, 520, 915
MnlI CCTC 8 cut(s) 82, 133, 215, 550, 760, 974, 1157, 1181
Mox20I TGGCCA 1 cut(s) 17
MroXI GAANNNNTTC 2 cut(s) 92, 229
MscI TGGCCA 1 cut(s) 17
MseI TTAA 4 cut(s) 294, 417, 567, 1119
MslI CAYNNNNRTG 2 cut(s) 23, 519
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 1315
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 3 cut(s) 301, 880, 1023
MunI CAATTG 2 cut(s) 462, 1244
Mva1269I GAATGC 1 cut(s) 834
MvaI CCWGG 2 cut(s) 880, 1023
MwoI GCNNNNNNNGC 3 cut(s) 401, 467, 476
NciI CCSGG 1 cut(s) 301
NdeII GATC 7 cut(s) 64, 213, 256, 613, 760, 1229, 1266
NlaIII CATG 5 cut(s) 22, 691, 790, 923, 1267
NmuCI GTSAC 4 cut(s) 889, 907, 1235, 1336
NspI RCATGY 1 cut(s) 923
PaeI GCATGC 1 cut(s) 923
PagI TCATGA 1 cut(s) 1263
PaqCI CACCTGC 1 cut(s) 496
PciSI GCTCTTC 1 cut(s) 1069
PctI GAATGC 1 cut(s) 834
PdmI GAANNNNTTC 2 cut(s) 92, 229
PfeI GAWTC 4 cut(s) 145, 488, 629, 636
PfoI TCCNGGA 1 cut(s) 1021
PkrI GCNGC 6 cut(s) 481, 711, 1081, 1155, 1314, 1317
PleI GAGTC 3 cut(s) 169, 520, 914
PpsI GAGTC 3 cut(s) 169, 520, 914
PsiI TTATAA 1 cut(s) 1215
Psp6I CCWGG 2 cut(s) 878, 1021
PspGI CCWGG 2 cut(s) 878, 1021
PsuI RGATCY 2 cut(s) 256, 1229
PvuII CAGCTG 1 cut(s) 1315
RsaI GTAC 3 cut(s) 201, 370, 539
RsaNI GTAC 3 cut(s) 200, 369, 538
RseI CAYNNNNRTG 2 cut(s) 23, 519
SapI GCTCTTC 1 cut(s) 1069
SaqAI TTAA 4 cut(s) 294, 417, 567, 1119
SatI GCNGC 6 cut(s) 480, 710, 1080, 1154, 1313, 1316
Sau3AI GATC 7 cut(s) 64, 213, 256, 613, 760, 1229, 1266
ScaI AGTACT 1 cut(s) 201
SchI GAGTC 3 cut(s) 170, 520, 915
ScrFI CCNGG 3 cut(s) 301, 880, 1023
SduI GDGCHC 1 cut(s) 513
SfaNI GCATC 5 cut(s) 139, 244, 562, 771, 970
SfcI CTRYAG 1 cut(s) 1200
SmiMI CAYNNNNRTG 2 cut(s) 23, 519
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SphI GCATGC 1 cut(s) 923
Sse9I AATT 6 cut(s) 41, 334, 422, 462, 1140, 1244
SsiI CCGC 1 cut(s) 171
SspI AATATT 1 cut(s) 474
SspMI CTAG 2 cut(s) 692, 1272
StyD4I CCNGG 3 cut(s) 299, 878, 1021
StyI CCWWGG 1 cut(s) 984
TaaI ACNGT 4 cut(s) 537, 542, 844, 1303
TaiI ACGT 2 cut(s) 503, 1031
TasI AATT 6 cut(s) 41, 334, 422, 462, 1140, 1244
TatI WGTACW 2 cut(s) 199, 537
TfiI GAWTC 4 cut(s) 145, 488, 629, 636
Tru1I TTAA 4 cut(s) 294, 417, 567, 1119
Tru9I TTAA 4 cut(s) 294, 417, 567, 1119
TscAI CASTG 6 cut(s) 223, 256, 847, 1038, 1044, 1308
TseFI GTSAC 4 cut(s) 889, 907, 1235, 1336
TseI GCWGC 6 cut(s) 479, 709, 1079, 1153, 1312, 1315
Tsp45I GTSAC 4 cut(s) 889, 907, 1235, 1336
TspDTI ATGAA 3 cut(s) 328, 712, 789
TspGWI ACGGA 2 cut(s) 320, 500
TspRI CASTG 6 cut(s) 223, 256, 847, 1038, 1044, 1308
XceI RCATGY 1 cut(s) 923
XmiI GTMKAC 1 cut(s) 191
XmnI GAANNNNTTC 2 cut(s) 92, 229
XspI CTAG 2 cut(s) 692, 1272
ZrmI AGTACT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.