Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001413

Physical Location & Seq

Genomic Coordinates Forward (+)

29271421 .. 29272367

Gene Structure 947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0167000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAACTTACAGAGCTCTCTTTAGCTCCAACGATATCTGCAGAAAGCAAGAACATGAATACTAGCAGGAAGAAGAGGAAGCTTTTTGAAGATGATTACCTCCTGATGAAGATTAATGAAACATCAGTAGTTCGTACAAGTCATGTTGATCTCGAGCTTGAAAACCCTTTGCCATTGGATTGGGAGCAGTGCCTTGATCTTAAGTCGGGAAAAGTGTACTATTTGAACAGAAAGACGTCGAAAAAGAGTTGGAAGCGGCCGTCAAAGGAGGATCAGGAAGAGGCACATCTGGACCTTGAGCTCCACATCTCGAGCACCTTCTCGGCCGATAATTCGTGTTCGGAGCAGCGACGTTGTCGAAGAAGCTCAAAGAAAGTGACTGCCGAAGAGGTGGTGATCGATCGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

136

Amino Acids

15.86

Weight (kDa)

6.84

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	57 - 87	1.5e-07	WW domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05030 AT3G05030 AT3G05030 AT3G05030 AT5G27150
fragaria_vesca	FvH4_4g17120 FvH4_4g17120 FvH4_6g04140
malus_domestica	MD00G1051300.v1.1 MD12G1232400.v1.1 MD13G1174300.v1.1 MD16G1175800.v1.1
prunus_persica	Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.1G142700_v2.0.a1 Prupe.6G335800_v2.0.a1
pyrus_communis	pycom12g21480 pycom13g14990 pycom16g14730
rosa_chinensis	RchiOBHm_Chr3g0452721 RchiOBHm_Chr4g0420901 RchiOBHm_Chr5g0080441
rosa_laevigata	RLG00000007726 RLG00000025572
rosa_multiflora	Rmu_sc0002006.1_g000006
rosa_roxburghii	Rroxscaffold_5G00363300 Rroxscaffold_6G00429730
rosa_rugosa	Rorug02G0642900 Rorug02G0642900 Rorug04G0166900 Rorug04G0167000 Rorug04G0167100
rosa_samantha	Rh3AG045100 Rh3BG047600 Rh3CG046100 Rh3DG046400 Rh4BG231400 Rh4DG226500
rosa_wichuraiana	Rw3G003530 Rw4G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	239
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	2 cut(s)	257, 324
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	2 cut(s)	136, 218
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	89, 161, 226
AluBI	AGCT	6 cut(s)	16, 26, 82, 157, 301, 366
AluI	AGCT	6 cut(s)	16, 26, 82, 157, 301, 366
Alw21I	GWGCWC	3 cut(s)	18, 303, 317
AlwI	GGATC	1 cut(s)	279
Ama87I	CYCGRG	2 cut(s)	152, 310
AoxI	GGCC	2 cut(s)	257, 324
ApeKI	GCWGC	1 cut(s)	346
AseI	ATTAAT	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	406
AvaI	CYCGRG	2 cut(s)	152, 310
AvaII	GGWCC	1 cut(s)	292
BanII	GRGCYC	2 cut(s)	18, 303
Bbv12I	GWGCWC	3 cut(s)	18, 303, 317
BbvI	GCAGC	1 cut(s)	358
BceAI	ACGGC	1 cut(s)	244
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	2 cut(s)	257, 347
BlsI	GCNGC	2 cut(s)	258, 348
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	2 cut(s)	152, 310
BmgT120I	GGNCC	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	399
BseX3I	CGGCCG	2 cut(s)	257, 324
BseXI	GCAGC	1 cut(s)	358
Bsh1285I	CGRYCG	3 cut(s)	260, 327, 403
BshFI	GGCC	2 cut(s)	259, 326
BshVI	ATCGAT	1 cut(s)	399
BsiEI	CGRYCG	3 cut(s)	260, 327, 403
BsiHKAI	GWGCWC	3 cut(s)	18, 303, 317
BsiHKCI	CYCGRG	2 cut(s)	152, 310
BsnI	GGCC	2 cut(s)	259, 326
BsoBI	CYCGRG	2 cut(s)	152, 310
Bsp1286I	GDGCHC	3 cut(s)	18, 303, 317
Bsp143I	GATC	5 cut(s)	148, 196, 271, 396, 400
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	2 cut(s)	259, 326
BspDI	ATCGAT	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	1 cut(s)	279
BspTI	CTTAAG	1 cut(s)	200
BssMI	GATC	5 cut(s)	148, 196, 271, 396, 400
BssNI	GRCGYC	1 cut(s)	236
Bst6I	CTCTTC	3 cut(s)	68, 273, 381
BstACI	GRCGYC	1 cut(s)	236
BstAFI	CTTAAG	1 cut(s)	200
BstKTI	GATC	5 cut(s)	151, 199, 274, 399, 403
BstMBI	GATC	5 cut(s)	148, 196, 271, 396, 400
BstMCI	CGRYCG	3 cut(s)	260, 327, 403
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	180
BstZI	CGGCCG	2 cut(s)	257, 324
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	259, 326
BsuTUI	ATCGAT	1 cut(s)	399
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	292
ClaI	ATCGAT	1 cut(s)	399
Csp6I	GTAC	2 cut(s)	135, 217
CviAII	CATG	2 cut(s)	55, 143
CviJI	RGCY	8 cut(s)	16, 26, 82, 157, 259, 301, 326, 366
CviKI_1	RGCY	8 cut(s)	16, 26, 82, 157, 259, 301, 326, 366
CviQI	GTAC	2 cut(s)	135, 217
DpnI	GATC	5 cut(s)	150, 198, 273, 398, 402
DpnII	GATC	5 cut(s)	148, 196, 271, 396, 400
EaeI	YGGCCR	2 cut(s)	257, 324
EagI	CGGCCG	2 cut(s)	257, 324
Eam1104I	CTCTTC	3 cut(s)	68, 273, 381
EarI	CTCTTC	3 cut(s)	68, 273, 381
Ecl136II	GAGCTC	2 cut(s)	16, 301
EclXI	CGGCCG	2 cut(s)	257, 324
Eco24I	GRGCYC	2 cut(s)	18, 303
Eco32I	GATATC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	292
Eco52I	CGGCCG	2 cut(s)	257, 324
Eco53kI	GAGCTC	2 cut(s)	16, 301
Eco88I	CYCGRG	2 cut(s)	152, 310
EcoICRI	GAGCTC	2 cut(s)	16, 301
EcoRV	GATATC	1 cut(s)	36
EcoT38I	GRGCYC	2 cut(s)	18, 303
FaeI	CATG	2 cut(s)	58, 146
FaiI	YATR	2 cut(s)	56, 144
FatI	CATG	2 cut(s)	54, 142
Fnu4HI	GCNGC	2 cut(s)	257, 347
FriOI	GRGCYC	2 cut(s)	18, 303
Fsp4HI	GCNGC	2 cut(s)	257, 347
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	2 cut(s)	257, 347
HaeIII	GGCC	2 cut(s)	259, 326
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	2 cut(s)	58, 146
HindIII	AAGCTT	1 cut(s)	80
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	6 cut(s)	103, 152, 207, 275, 290, 310
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	2 cut(s)	241, 354
HpyAV	CCTTC	1 cut(s)	328
HpyCH4IV	ACGT	2 cut(s)	236, 352
HpyCH4V	TGCA	1 cut(s)	41
HpySE526I	ACGT	2 cut(s)	236, 352
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	2 cut(s)	58, 146
Kzo9I	GATC	5 cut(s)	148, 196, 271, 396, 400
LmnI	GCTCC	4 cut(s)	31, 184, 306, 343
LpnPI	CCDG	4 cut(s)	52, 116, 260, 275
Lsp1109I	GCAGC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	2 cut(s)	236, 352
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	5 cut(s)	150, 198, 273, 398, 402
MboI	GATC	5 cut(s)	148, 196, 271, 396, 400
MboII	GAAGA	7 cut(s)	82, 85, 101, 121, 290, 372, 398
MhlI	GDGCHC	3 cut(s)	18, 303, 317
MluCI	AATT	1 cut(s)	331
MmeI	TCCRAC	2 cut(s)	53, 230
MnlI	CCTC	5 cut(s)	69, 110, 262, 274, 382
MseI	TTAA	2 cut(s)	114, 201
MspCI	CTTAAG	1 cut(s)	200
NdeII	GATC	5 cut(s)	148, 196, 271, 396, 400
NlaIII	CATG	2 cut(s)	58, 146
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	376
PaeR7I	CTCGAG	2 cut(s)	152, 310
PflFI	GACNNNGTC	1 cut(s)	354
PkrI	GCNGC	2 cut(s)	258, 348
Ple19I	CGATCG	1 cut(s)	403
PshBI	ATTAAT	1 cut(s)	114
Psp124BI	GAGCTC	2 cut(s)	18, 303
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	354
PvuI	CGATCG	1 cut(s)	403
RsaI	GTAC	2 cut(s)	136, 218
RsaNI	GTAC	2 cut(s)	135, 217
SacI	GAGCTC	2 cut(s)	18, 303
SaqAI	TTAA	2 cut(s)	114, 201
SatI	GCNGC	2 cut(s)	257, 347
Sau3AI	GATC	5 cut(s)	148, 196, 271, 396, 400
Sau96I	GGNCC	1 cut(s)	292
SduI	GDGCHC	3 cut(s)	18, 303, 317
SfcI	CTRYAG	1 cut(s)	39
Sfr274I	CTCGAG	2 cut(s)	152, 310
SinI	GGWCC	1 cut(s)	292
SlaI	CTCGAG	2 cut(s)	152, 310
SmlI	CTYRAG	4 cut(s)	152, 200, 296, 310
SmoI	CTYRAG	4 cut(s)	152, 200, 296, 310
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	2 cut(s)	18, 303
TaiI	ACGT	2 cut(s)	239, 355
TaqI	TCGA	5 cut(s)	153, 239, 311, 358, 399
TasI	AATT	1 cut(s)	331
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	114, 201
Tru9I	TTAA	2 cut(s)	114, 201
TscAI	CASTG	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	3 cut(s)	71, 122, 132
TspRI	CASTG	1 cut(s)	194
Tth111I	GACNNNGTC	1 cut(s)	354
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	114
XhoI	CTCGAG	2 cut(s)	152, 310
XspI	CTAG	1 cut(s)	63
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.