Rorug04G0166900

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
29253507 .. 29257906
4400 bp
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UTR
Exon/CDS
Intron
Rorug04G0166900.1

Sequence Viewer

Length: 375 bp
ATGGCTTATGAATTGACTGAGCAAAAAAAGGTTGGGTTGGGTCTTCTTGGGTTTGGCATCTTATTCGCATTTCTGGGTGTAGTGCTTTTCTTCGACAGAGGTTTGATTGCTCTTGGGAATATATTTTGGTTGACTGGAGTGGCCCTTTTACTTGGTTGGCGTTCTACATTGAATGTCTTCACTAGCAAAGCACACGTAAAGGGTTCTGCATCTTTTCTGATTGGTCTCTTTTTCCTTTTTGTTCGGTGGCCAATACTTGGCATAATCTTGGAACTATATGGTTGTATCGTTCTGTTCGGTGGTTTTTGGCCAACTATAAAGGTGTTCCTTTGTGAAGTTCCATTTTTGGGATGGGTTATACGATATATGTTCTGA

Protein Analysis

124

Amino Acids

13.96

Weight (kDa)

9.39

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 15 - 114 1e-09 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 257
AcoI YGGCCR 2 cut(s) 248, 308
AfiI CCNNNNNNNGG 2 cut(s) 257, 347
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 230
AoxI GGCC 3 cut(s) 141, 248, 308
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 142
BalI TGGCCA 2 cut(s) 250, 310
BbsI GAAGAC 2 cut(s) 35, 169
BccI CCATC 1 cut(s) 345
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 142
BmsI GCATC 2 cut(s) 66, 218
BpiI GAAGAC 2 cut(s) 35, 169
BpmI CTGGAG 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 347
Bse1I ACTGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 257, 347
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 139
BshFI GGCC 3 cut(s) 143, 250, 310
BslI CCNNNNNNNGG 2 cut(s) 257, 347
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 3 cut(s) 143, 250, 310
Bso31I GGTCTC 1 cut(s) 230
BspANI GGCC 3 cut(s) 143, 250, 310
BspCNI CTCAG 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 139
BstBAI YACGTR 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 356
BstMAI GTCTC 1 cut(s) 230
BstV2I GAAGAC 2 cut(s) 35, 169
BsuRI GGCC 3 cut(s) 143, 250, 310
BtsCI GGATG 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 142
CviJI RGCY 4 cut(s) 5, 143, 250, 310
CviKI_1 RGCY 4 cut(s) 5, 143, 250, 310
DdeI CTNAG 1 cut(s) 18
EaeI YGGCCR 2 cut(s) 248, 308
Eco31I GGTCTC 1 cut(s) 230
FaiI YATR 9 cut(s) 9, 122, 263, 277, 279, 317, 359, 366, 368
FokI GGATG 1 cut(s) 363
FspBI CTAG 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 3 cut(s) 143, 250, 310
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 2 cut(s) 219, 374
Hpy8I GTNNAC 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 195
LpnPI CCDG 2 cut(s) 59, 120
LweI GCATC 2 cut(s) 66, 218
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 195
MboII GAAGA 3 cut(s) 35, 82, 169
MlsI TGGCCA 2 cut(s) 250, 310
MluCI AATT 1 cut(s) 11
MluNI TGGCCA 2 cut(s) 250, 310
MnlI CCTC 1 cut(s) 92
Mox20I TGGCCA 2 cut(s) 250, 310
MroXI GAANNNNTTC 1 cut(s) 176
MscI TGGCCA 2 cut(s) 250, 310
Msp20I TGGCCA 2 cut(s) 250, 310
PdmI GAANNNNTTC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 257
Ppu21I YACGTR 1 cut(s) 196
PspPI GGNCC 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 142
SetI ASST 4 cut(s) 33, 103, 198, 324
SfaNI GCATC 2 cut(s) 66, 218
SgeI CNNG 9 cut(s) 59, 86, 125, 147, 164, 195, 206, 269, 280
Sse9I AATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 183
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 24
Van91I CCANNNNNTGG 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.