FvH4_6g04430

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005538
Physical Location & Seq
Forward (+)
2418981 .. 2420250
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04430.t1

Sequence Viewer

Length: 420 bp
ATGAGGATTGAGGAGGTGAGGCTGAACAAGGCAATGGAGGAGTGGTGCTGTAGGGTTGAGATGAAGGAGAGGGAGGTTATTACTGGTACTATTCGGATTCTTATTGAGAGAAAGCAGCTGATTAAGGCTGTTCCATTTATCTGCAACTTCAAGCAAAATGACGAGTTTCCCCTGGTGCCACTCTTGAGAGAATATGTGCAAAAGGAGAGTTGCACTGAAATTTTCAGTAAAGACATATCACATGATGAAAAGGAAAAGGTTGTAGATGACCGAATAGCTGCTCTAAGAGCTCTGATTCAATGCATTGAAGATCACGGCTTCGAGTCGCATTACCCACCAACTGATATTATGATGGAAATTGAATGGCTTGGGGAGCTAAAGGAGAATCCAAACCTGGTGTTATCTTCAGTCCAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

140

Amino Acids

16.39

Weight (kDa)

4.98

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 5 - 130 1e-17 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 1 cut(s) 88
AgsI TTSAA 4 cut(s) 151, 299, 308, 362
AjnI CCWGG 2 cut(s) 171, 393
AluBI AGCT 4 cut(s) 118, 278, 290, 376
AluI AGCT 4 cut(s) 118, 278, 290, 376
Alw21I GWGCWC 1 cut(s) 292
ApeKI GCWGC 2 cut(s) 115, 278
ApoI RAATTY 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 28
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 127, 265
BccI CCATC 1 cut(s) 346
BceAI ACGGC 1 cut(s) 331
BciT130I CCWGG 2 cut(s) 173, 395
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 2 cut(s) 116, 279
BlsI GCNGC 2 cut(s) 117, 280
Bme1390I CCNGG 2 cut(s) 173, 395
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 2 cut(s) 173, 395
BpuEI CTTGAG 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bse1I ACTGG 2 cut(s) 88, 412
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 2 cut(s) 173, 395
BseDI CCNNGG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 88, 412
BseRI GAGGAG 2 cut(s) 26, 53
BseXI GCAGC 2 cut(s) 127, 265
BshNI GGYRCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 2 cut(s) 88, 412
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 310
Bst2UI CCWGG 2 cut(s) 173, 395
BstDEI CTNAG 1 cut(s) 284
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 2 cut(s) 287, 373
BstNI CCWGG 2 cut(s) 173, 395
BstSCI CCNGG 2 cut(s) 171, 393
BstSFI CTRYAG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 127, 265
BtsIMutI CAGTG 2 cut(s) 213, 419
CsiI ACCWGGT 1 cut(s) 393
Csp6I GTAC 1 cut(s) 87
CviAII CATG 1 cut(s) 242
CviJI RGCY 8 cut(s) 22, 118, 128, 278, 290, 318, 367, 376
CviKI_1 RGCY 8 cut(s) 22, 118, 128, 278, 290, 318, 367, 376
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 1 cut(s) 284
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 290
Eco24I GRGCYC 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 390
EcoICRI GAGCTC 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 171, 393
EcoT22I ATGCAT 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 292
FaeI CATG 1 cut(s) 245
FaiI YATR 4 cut(s) 195, 236, 243, 350
FatI CATG 1 cut(s) 241
Fnu4HI GCNGC 2 cut(s) 116, 279
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 2 cut(s) 116, 279
GluI GCNGC 2 cut(s) 116, 279
Hin1II CATG 1 cut(s) 245
HinfI GANTC 4 cut(s) 97, 295, 323, 385
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 96, 294
Hpy188III TCNNGA 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 4 cut(s) 144, 199, 213, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 373
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 5 cut(s) 69, 158, 185, 380, 407
Lsp1109I GCAGC 2 cut(s) 127, 265
MabI ACCWGGT 1 cut(s) 393
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 2 cut(s) 320, 396
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 2 cut(s) 219, 357
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 6 cut(s) 4, 7, 12, 31, 63, 67
Mph1103I ATGCAT 1 cut(s) 305
MseI TTAA 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 173, 395
MvaI CCWGG 2 cut(s) 173, 395
MwoI GCNNNNNNNGC 2 cut(s) 287, 373
NdeII GATC 1 cut(s) 310
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 177
NsiI ATGCAT 1 cut(s) 305
PfeI GAWTC 3 cut(s) 97, 295, 385
PkrI GCNGC 2 cut(s) 117, 280
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 2 cut(s) 171, 393
PspGI CCWGG 2 cut(s) 171, 393
PspN4I GGNNCC 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SacI GAGCTC 1 cut(s) 292
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 2 cut(s) 116, 279
Sau3AI GATC 1 cut(s) 310
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 173, 395
SduI GDGCHC 1 cut(s) 292
SetI ASST 8 cut(s) 18, 78, 120, 261, 280, 292, 378, 396
SexAI ACCWGGT 1 cut(s) 393
SfcI CTRYAG 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 2 cut(s) 219, 357
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 2 cut(s) 171, 393
TaqI TCGA 1 cut(s) 321
TaqII GACCGA 1 cut(s) 285
TasI AATT 2 cut(s) 219, 357
TfiI GAWTC 3 cut(s) 97, 295, 385
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 2 cut(s) 220, 419
TseI GCWGC 2 cut(s) 115, 278
TspDTI ATGAA 2 cut(s) 77, 261
TspRI CASTG 2 cut(s) 220, 419
XapI RAATTY 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.