FvH4_6g04591

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005538
Physical Location & Seq
Forward (+)
2529901 .. 2531780
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04591.t1

Sequence Viewer

Length: 582 bp
ATGATTGATAAGGATGGTAGAAGCTTTGAGGTGATCCCTGGTATTATTCGGAATCTTATTGTGAGAAAGCAGCTGATTAGGGCTGTTACATTTATCTGCAACTTCAAGCAAATTGACATGTTTCCCCTGGTACCACTCTTGAAAGAATATGTGGTGGATGCAAAGAAGATTTGCATTGAAATTTTCAGTAAAGACGAAAAGGTTGTAGATTACCAAATAGCTGGTCTAAGAGCTGTGATTCAGTGCATTGAAGATCACAGCCTCGAGTCGCAGTACTCACCAATTGATATTATGAGGGAAATTGAAGGGCTTGGGGAGCTAAAGGAGAACCCAAACCTGGTGCTATCTCTACTGTCCAATGTTGAAAACCATGAGCAGAAAAAAGGAAGGAAGCAAAGTTCCAGAGTTGGGTGGTTCAGTGCAGTTATTCTGCATAATTTTGTGGAGGTCATAGTTATTTTGGTACTGGGACATATTGATTCTTTTGGTACACTCATGGTAATCAGAACACTTGTAAAGCTTGCTAGCCAGTTGATTACCATAACCATGCATCCTCCAACTTGCTTAGAGGGCTCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

194

Amino Acids

21.81

Weight (kDa)

6.52

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 12 - 111 1.4e-17 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 130
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 1 cut(s) 180
AfaI GTAC 4 cut(s) 132, 275, 465, 490
AfiI CCNNNNNNNGG 2 cut(s) 337, 408
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 6 cut(s) 106, 142, 179, 251, 305, 365
AjnI CCWGG 3 cut(s) 37, 126, 336
AloI GAACNNNNNNTCC 2 cut(s) 382, 414
AluBI AGCT 6 cut(s) 24, 73, 221, 233, 319, 520
AluI AGCT 6 cut(s) 24, 73, 221, 233, 319, 520
AlwI GGATC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 180
ArsI GACNNNNNNTTYG 2 cut(s) 208, 240
Asp718I GGTACC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 43, 270
AsuNHI GCTAGC 1 cut(s) 524
AvaI CYCGRG 1 cut(s) 263
BanI GGYRCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 575
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 8
BciT130I CCWGG 3 cut(s) 39, 128, 338
BfaI CTAG 1 cut(s) 525
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 3 cut(s) 39, 128, 338
BmeT110I CYCGRG 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 3 cut(s) 39, 128, 338
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 2 cut(s) 148, 559
BmtI GCTAGC 1 cut(s) 528
BmuI ACTGGG 1 cut(s) 476
BsaJI CCNNGG 2 cut(s) 37, 126
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 408
Bse1I ACTGG 2 cut(s) 471, 529
BseBI CCWGG 3 cut(s) 39, 128, 338
BseDI CCNNGG 2 cut(s) 37, 126
BseGI GGATG 3 cut(s) 19, 163, 550
BseLI CCNNNNNNNGG 2 cut(s) 337, 408
BseNI ACTGG 2 cut(s) 471, 529
BseXI GCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 441
BshNI GGYRCC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 2 cut(s) 337, 408
BsmFI GGGAC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 2 cut(s) 33, 253
BspLI GGNNCC 1 cut(s) 132
BspOI GCTAGC 1 cut(s) 528
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 130
BsrI ACTGG 2 cut(s) 471, 529
BssECI CCNNGG 2 cut(s) 37, 126
BssMI GATC 2 cut(s) 33, 253
Bst2UI CCWGG 3 cut(s) 39, 128, 338
Bst4CI ACNGT 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 522, 526
BstDEI CTNAG 2 cut(s) 227, 565
BstF5I GGATG 3 cut(s) 19, 163, 550
BstKTI GATC 2 cut(s) 36, 256
BstMBI GATC 2 cut(s) 33, 253
BstMWI GCNNNNNNNGC 2 cut(s) 316, 570
BstNI CCWGG 3 cut(s) 39, 128, 338
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 3 cut(s) 37, 126, 336
BstV1I GCAGC 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 221
BtsCI GGATG 3 cut(s) 19, 163, 550
BtsIMutI CAGTG 2 cut(s) 248, 424
Cac8I GCNNGC 2 cut(s) 522, 526
CsiI ACCWGGT 1 cut(s) 336
Csp6I GTAC 4 cut(s) 131, 274, 464, 489
CviAII CATG 4 cut(s) 118, 371, 496, 547
CviQI GTAC 4 cut(s) 131, 274, 464, 489
DdeI CTNAG 2 cut(s) 227, 565
DpnI GATC 2 cut(s) 35, 255
DpnII GATC 2 cut(s) 33, 253
Eco24I GRGCYC 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 263
EcoRII CCWGG 3 cut(s) 37, 126, 336
EcoT22I ATGCAT 1 cut(s) 552
EcoT38I GRGCYC 1 cut(s) 575
FaeI CATG 4 cut(s) 121, 374, 499, 550
FaqI GGGAC 1 cut(s) 483
FatI CATG 4 cut(s) 117, 370, 495, 546
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 3 cut(s) 26, 170, 537
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 1 cut(s) 525
GluI GCNGC 1 cut(s) 71
Hin1II CATG 4 cut(s) 121, 374, 499, 550
HindIII AAGCTT 2 cut(s) 22, 518
HinfI GANTC 4 cut(s) 52, 238, 266, 479
HphI GGTGA 2 cut(s) 43, 270
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 2 cut(s) 51, 506
Hpy188III TCNNGA 2 cut(s) 139, 402
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 2 cut(s) 299, 381
HpyCH4III ACNGT 1 cut(s) 354
HpyCH4V TGCA 7 cut(s) 99, 161, 174, 246, 422, 433, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 316, 570
HpyF3I CTNAG 2 cut(s) 227, 565
Hsp92II CATG 4 cut(s) 121, 374, 499, 550
KpnI GGTACC 1 cut(s) 134
Kzo9I GATC 2 cut(s) 33, 253
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 2 cut(s) 148, 559
MabI ACCWGGT 1 cut(s) 336
MaeI CTAG 1 cut(s) 525
MaeIII GTNAC 1 cut(s) 85
MalI GATC 2 cut(s) 35, 255
MboI GATC 2 cut(s) 33, 253
MboII GAAGA 2 cut(s) 178, 263
MfeI CAATTG 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 5 cut(s) 111, 180, 282, 300, 436
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 581
MnlI CCTC 6 cut(s) 22, 272, 288, 439, 562, 564
Mph1103I ATGCAT 1 cut(s) 552
MslI CAYNNNNRTG 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 73
MspR9I CCNGG 3 cut(s) 39, 128, 338
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 3 cut(s) 39, 128, 338
MwoI GCNNNNNNNGC 2 cut(s) 316, 570
NdeII GATC 2 cut(s) 33, 253
NheI GCTAGC 1 cut(s) 524
NlaIII CATG 4 cut(s) 121, 374, 499, 550
NlaIV GGNNCC 1 cut(s) 132
NsiI ATGCAT 1 cut(s) 552
NspI RCATGY 1 cut(s) 121
PaeR7I CTCGAG 1 cut(s) 263
PciI ACATGT 1 cut(s) 117
PfeI GAWTC 3 cut(s) 52, 238, 479
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PscI ACATGT 1 cut(s) 117
Psp6I CCWGG 3 cut(s) 37, 126, 336
PspGI CCWGG 3 cut(s) 37, 126, 336
PspN4I GGNNCC 1 cut(s) 132
PspXI VCTCGAGB 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 4 cut(s) 132, 275, 465, 490
RsaNI GTAC 4 cut(s) 131, 274, 464, 489
RseI CAYNNNNRTG 1 cut(s) 545
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 2 cut(s) 33, 253
ScaI AGTACT 1 cut(s) 275
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 3 cut(s) 39, 128, 338
SduI GDGCHC 1 cut(s) 575
SexAI ACCWGGT 1 cut(s) 336
SfaNI GCATC 2 cut(s) 148, 559
Sfr274I CTCGAG 1 cut(s) 263
SlaI CTCGAG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 5 cut(s) 111, 180, 282, 300, 436
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 3 cut(s) 37, 126, 336
TaaI ACNGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 264
TasI AATT 5 cut(s) 111, 180, 282, 300, 436
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 3 cut(s) 52, 238, 479
TscAI CASTG 2 cut(s) 248, 424
TseI GCWGC 1 cut(s) 70
TspRI CASTG 2 cut(s) 248, 424
XapI RAATTY 1 cut(s) 180
XceI RCATGY 1 cut(s) 121
XhoI CTCGAG 1 cut(s) 263
XspI CTAG 1 cut(s) 525
ZrmI AGTACT 1 cut(s) 275
Zsp2I ATGCAT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.