FvH4_6g04560

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005538
Physical Location & Seq
Reverse (-)
2516176 .. 2517157
982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04560.t1

Sequence Viewer

Length: 309 bp
ATGAGGATTGAGGAGGTGAGGCTGAACAAGGCAATGGAGGCGTGGTGCTGTAGGGTTGAGATGAAGGAGAGGGAGGTTATTACTGGTACTATTCGGATTCTTATTGAGAGAAAGCAGCTGATTAAGGCTGTTCCATTTATCTGCAACTTCAAGCAAAATGACGAGTTTCCCCTGGTGCCACTCTTGAGAGAATATGTGCAAAAGAAGAGTTGCACTGAAATTTTCAGTAAAGACATATCACATGATGAAAAGGAAAAGGTTGTAGATGACCGAATGGCTGATCTAAGAGCTCTGATTCAGTGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

103

Amino Acids

12.13

Weight (kDa)

7.6

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 5 - 102 1.7e-10 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 219
AfaI GTAC 1 cut(s) 88
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 118, 290
AluI AGCT 2 cut(s) 118, 290
Alw21I GWGCWC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 28
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 284
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 213, 305
Csp6I GTAC 1 cut(s) 87
CviAII CATG 1 cut(s) 242
CviJI RGCY 5 cut(s) 22, 118, 128, 278, 290
CviKI_1 RGCY 5 cut(s) 22, 118, 128, 278, 290
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 1 cut(s) 284
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 290
Eco24I GRGCYC 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 292
FaeI CATG 1 cut(s) 245
FaiI YATR 3 cut(s) 195, 236, 243
FatI CATG 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 116
Hin1II CATG 1 cut(s) 245
HinfI GANTC 2 cut(s) 97, 295
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 96, 294
Hpy188III TCNNGA 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 4 cut(s) 144, 199, 213, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 3 cut(s) 69, 158, 185
Lsp1109I GCAGC 1 cut(s) 127
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 1 cut(s) 219
MnlI CCTC 6 cut(s) 4, 7, 12, 31, 63, 67
MseI TTAA 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 118
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 97, 295
PkrI GCNGC 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SacI GAGCTC 1 cut(s) 292
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 280
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 292
SetI ASST 5 cut(s) 18, 78, 120, 261, 292
SfcI CTRYAG 1 cut(s) 49
SgeI CNNG 9 cut(s) 40, 54, 96, 163, 175, 184, 185, 196, 254
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 1 cut(s) 219
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 171
TaqII GACCGA 1 cut(s) 285
TasI AATT 1 cut(s) 219
TfiI GAWTC 2 cut(s) 97, 295
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 2 cut(s) 220, 305
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 77, 261
TspRI CASTG 2 cut(s) 220, 305
XapI RAATTY 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.