Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005538

Physical Location & Seq

Genomic Coordinates Reverse (-)

36326064 .. 36326910

Gene Structure 847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018793

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGATGGATGCTTAAATGAGGGTCTGTGTAAAGAGAGGTACTTGCAGACATGTGAAAAATCGATACAAGAGCGCAAAAGGTGTTTGGATTCATTGTCCCATGAACTTAAGATGAAAGAGAGGCACATTGATGAGGAGGCCAAAGAGCTTGAATTGAAGCAAATACAATTTTATTCTCAAGTGAAGACTCAACAGTTGGAAAGAGAAAAGCATTTTGCTTCACTTAAAAAATCATTAGAACAACAAGAACAATCTTTGGATGCACTCCAAAAGTCGATAGAAGAGCAATTGGAAAGAGAAGAGCTACTTGCTGTACTTGGAAAGTCAATAGATGAATCTGAAAAGATGTTCAACACATTCCAAAAGTCGGTTCAAGAGCAGAAAAAGCATTTGGATTCACCCTCCTATACACTCCATATAAGAGAGATGCAAGTTGAAAAGCAAGGCGAAGAGCATGAATTGTGGTCAAAACATTCTGATTCTGGATTGAATACTGAGCTGTTGGAACTTACTCATGCCGCTGATGATATGATTATTCCTCAATCTGTAAGTGATCAACCCAACATAGTTACGGAAGGTAGAAGCTTTGAGGTGATCCCTGATCTTATGTCCCTTGTGCTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

24.31

Weight (kDa)

5.08

Isoelectric Point (pI)

62.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04430 FvH4_6g04451 FvH4_6g04560 FvH4_6g04591 FvH4_6g04640 FvH4_6g04640
rosa_chinensis	RchiOBHm_Chr3g0453121
rosa_laevigata	RLG00000018793 RLG00000025536 RLG00000025548
rosa_multiflora	Rmu_co8454967.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430180
rosa_rugosa	Rorug02G0250100 Rorug02G0250200 Rorug02G0646700
rosa_samantha	Rh2AG308200 Rh2BG317000 Rh2BG317100 Rh2CG295100 Rh2DG332200 Rh3AG047900 Rh3AG049200 Rh3BG050400 Rh3CG049300 Rh3CG050500 Rh3DG050100 Rh3DG051200
rosa_wichuraiana	Rw2G024830 Rw3G003770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	519
AclWI	GGATC	1 cut(s)	589
AfaI	GTAC	2 cut(s)	41, 315
AfiI	CCNNNNNNNGG	1 cut(s)	367
AflII	CTTAAG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	6 cut(s)	152, 157, 352, 374, 437, 490
AjuI	GAANNNNNNNTTGG	4 cut(s)	354, 374, 386, 406
AluBI	AGCT	4 cut(s)	148, 304, 499, 585
AluI	AGCT	4 cut(s)	148, 304, 499, 585
Alw21I	GWGCWC	1 cut(s)	621
AlwI	GGATC	1 cut(s)	589
AoxI	GGCC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	390, 604
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	621
BclI	TGATCA	1 cut(s)	553
BfrI	CTTAAG	1 cut(s)	107
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
BmsI	GCATC	2 cut(s)	250, 417
BpiI	GAAGAC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	162
Bsa29I	ATCGAT	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
BseCI	ATCGAT	1 cut(s)	62
BseGI	GGATG	3 cut(s)	10, 14, 265
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	486
BseRI	GAGGAG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	622
BslFI	GGGAC	2 cut(s)	82, 595
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	82, 595
BsnI	GGCC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	3 cut(s)	553, 594, 601
BspACI	CCGC	1 cut(s)	519
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	487
BspDI	ATCGAT	1 cut(s)	62
BspPI	GGATC	1 cut(s)	589
BspQI	GCTCTTC	3 cut(s)	276, 294, 444
BspTI	CTTAAG	1 cut(s)	107
BssMI	GATC	3 cut(s)	553, 594, 601
Bst4CI	ACNGT	1 cut(s)	195
Bst6I	CTCTTC	3 cut(s)	276, 294, 444
BstAFI	CTTAAG	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	3 cut(s)	10, 14, 265
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	3 cut(s)	556, 597, 604
BstMBI	GATC	3 cut(s)	553, 594, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstNSI	RCATGY	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	191
Bsu15I	ATCGAT	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	62
BtsCI	GGATG	3 cut(s)	10, 14, 265
CfoI	GCGC	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	40, 314
CviAII	CATG	4 cut(s)	51, 101, 455, 515
CviJI	RGCY	5 cut(s)	140, 148, 304, 499, 585
CviKI_1	RGCY	5 cut(s)	140, 148, 304, 499, 585
CviQI	GTAC	2 cut(s)	40, 314
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	3 cut(s)	555, 596, 603
DpnII	GATC	3 cut(s)	553, 594, 601
Eam1104I	CTCTTC	3 cut(s)	276, 294, 444
EarI	CTCTTC	3 cut(s)	276, 294, 444
FaeI	CATG	4 cut(s)	54, 104, 458, 518
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FaqI	GGGAC	2 cut(s)	82, 595
FatI	CATG	4 cut(s)	50, 100, 454, 514
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	3 cut(s)	17, 21, 272
Fsp4HI	GCNGC	1 cut(s)	519
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	622
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	4 cut(s)	54, 104, 458, 518
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	583
HinfI	GANTC	5 cut(s)	89, 187, 335, 395, 479
HpaII	CCGG	1 cut(s)	622
HphI	GGTGA	2 cut(s)	390, 604
Hpy188I	TCNGA	2 cut(s)	340, 478
Hpy188III	TCNNGA	2 cut(s)	374, 483
HpyAV	CCTTC	1 cut(s)	569
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	46, 263, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpyF3I	CTNAG	1 cut(s)	495
Hsp92II	CATG	4 cut(s)	54, 104, 458, 518
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	553, 594, 601
LguI	GCTCTTC	3 cut(s)	276, 294, 444
LmnI	GCTCC	1 cut(s)	624
LpnPI	CCDG	2 cut(s)	468, 612
LweI	GCATC	2 cut(s)	250, 417
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	3 cut(s)	555, 596, 603
MboI	GATC	3 cut(s)	553, 594, 601
MboII	GAAGA	4 cut(s)	196, 293, 311, 461
MfeI	CAATTG	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	4 cut(s)	152, 167, 287, 458
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	2 cut(s)	177, 483
MnlI	CCTC	8 cut(s)	13, 30, 114, 127, 130, 412, 549, 583
MseI	TTAA	3 cut(s)	14, 108, 225
MslI	CAYNNNNRTG	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	521
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	1 cut(s)	622
MunI	CAATTG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	385
NdeII	GATC	3 cut(s)	553, 594, 601
NlaIII	CATG	4 cut(s)	54, 104, 458, 518
NspI	RCATGY	1 cut(s)	54
PciI	ACATGT	1 cut(s)	50
PciSI	GCTCTTC	3 cut(s)	276, 294, 444
PfeI	GAWTC	4 cut(s)	89, 335, 395, 479
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PscI	ACATGT	1 cut(s)	50
RsaI	GTAC	2 cut(s)	41, 315
RsaNI	GTAC	2 cut(s)	40, 314
RseI	CAYNNNNRTG	1 cut(s)	129
SapI	GCTCTTC	3 cut(s)	276, 294, 444
SaqAI	TTAA	3 cut(s)	14, 108, 225
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	3 cut(s)	553, 594, 601
SchI	GAGTC	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	621
SetI	ASST	8 cut(s)	41, 83, 150, 306, 501, 580, 587, 594
SfaNI	GCATC	2 cut(s)	250, 417
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	107, 177
SmoI	CTYRAG	2 cut(s)	107, 177
Sse9I	AATT	4 cut(s)	152, 167, 287, 458
SsiI	CCGC	1 cut(s)	519
TaaI	ACNGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	62, 275
TasI	AATT	4 cut(s)	152, 167, 287, 458
TatI	WGTACW	1 cut(s)	313
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	4 cut(s)	89, 335, 395, 479
Tru1I	TTAA	3 cut(s)	14, 108, 225
Tru9I	TTAA	3 cut(s)	14, 108, 225
TspDTI	ATGAA	5 cut(s)	81, 117, 128, 348, 471
TspGWI	ACGGA	1 cut(s)	587
Vha464I	CTTAAG	1 cut(s)	107
XceI	RCATGY	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.