Rh3DG050100

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005538
Physical Location & Seq
Forward (+)
3364779 .. 3365318
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG050100.1

Sequence Viewer

Length: 540 bp
ATGCGTTGTAAGTCTTCTTTTGGGGTTCCAATTTACAATTTTTATTTTCACATAGCAGATTTTATTCGGAATCTTGTTGGAAAGAAGCAACTGATTGAGGCTGTTAGAATTATTTGCACCTTAAAGTTAACTGATAGGTTCCCGCCTGTTCCACTCTTAAAAGAGTTTGCAAAGGATGTAAGGAATTGTTCCACTGAAGTTTGGAGGAAAAGGAAATCGCTGGTTGAAAAGGTAGCTATTCTTAAATCAGTTAAACCTAGGACATCATCCTCGATGTTAATATACATCTCTCTCAATGCTTACTTTTGCTCACAGGAGACGGTTGTAGATGGCCAAATAGCTGATTTAAGAGCTCTCGTTAAATGTATCAATGATTACAACCTAGAGTATGAGTTCCCATCCATGGCCATTGAAATGCACATAGTGGAGTTGAGAAAACTAAAGGAGAAATTGAGATGTTTGGCGCCTAGACATGTTGAACAACAAGAGCCCAGAAAAAGGAAGAAACCTAATGCTAGTACTTATGCCTCTGATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

179

Amino Acids

20.82

Weight (kDa)

9.6

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 17 - 150 1.5e-17 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 463
AciI CCGC 1 cut(s) 143
AcoI YGGCCR 2 cut(s) 331, 405
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 464
AdeI CACNNNGTG 1 cut(s) 424
AfaI GTAC 1 cut(s) 520
AfiI CCNNNNNNNGG 2 cut(s) 403, 498
AflIII ACRYGT 1 cut(s) 472
AgsI TTSAA 3 cut(s) 227, 413, 479
AluBI AGCT 3 cut(s) 236, 341, 353
AluI AGCT 3 cut(s) 236, 341, 353
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 1 cut(s) 311
AoxI GGCC 2 cut(s) 331, 405
AspA2I CCTAGG 1 cut(s) 257
AspLEI GCGC 1 cut(s) 466
AvrII CCTAGG 1 cut(s) 257
BalI TGGCCA 2 cut(s) 333, 407
BanI GGYRCC 1 cut(s) 463
BanII GRGCYC 2 cut(s) 355, 492
BbsI GAAGAC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 355
BccI CCATC 2 cut(s) 323, 406
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 4 cut(s) 258, 383, 468, 516
BfoI RGCGCY 1 cut(s) 467
BlnI CCTAGG 1 cut(s) 257
BmcAI AGTACT 1 cut(s) 520
BmiI GGNNCC 3 cut(s) 27, 140, 465
BpiI GAAGAC 1 cut(s) 6
BsaHI GRCGYC 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 257, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 498
BseDI CCNNGG 2 cut(s) 257, 402
BseGI GGATG 3 cut(s) 181, 266, 398
BseLI CCNNNNNNNGG 2 cut(s) 403, 498
BshFI GGCC 2 cut(s) 333, 407
BshNI GGYRCC 1 cut(s) 463
BsiHKAI GWGCWC 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 403, 498
BsmAI GTCTC 1 cut(s) 311
BsmBI CGTCTC 1 cut(s) 311
BsnI GGCC 2 cut(s) 333, 407
Bsp1286I GDGCHC 2 cut(s) 355, 492
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 1 cut(s) 143
BspANI GGCC 2 cut(s) 333, 407
BspLI GGNNCC 3 cut(s) 27, 140, 465
BspT107I GGYRCC 1 cut(s) 463
BssECI CCNNGG 2 cut(s) 257, 402
BssNI GRCGYC 1 cut(s) 464
BssT1I CCWWGG 2 cut(s) 257, 402
Bst4CI ACNGT 1 cut(s) 322
BstACI GRCGYC 1 cut(s) 464
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 3 cut(s) 181, 266, 398
BstH2I RGCGCY 1 cut(s) 467
BstHHI GCGC 1 cut(s) 466
BstMAI GTCTC 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 476
BstV2I GAAGAC 1 cut(s) 6
BsuRI GGCC 2 cut(s) 333, 407
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 3 cut(s) 181, 266, 398
BtsIMutI CAGTG 1 cut(s) 192
CfoI GCGC 1 cut(s) 466
Csp6I GTAC 1 cut(s) 519
CviAII CATG 2 cut(s) 403, 473
CviJI RGCY 7 cut(s) 101, 236, 333, 341, 353, 407, 490
CviKI_1 RGCY 7 cut(s) 101, 236, 333, 341, 353, 407, 490
CviQI GTAC 1 cut(s) 519
DinI GGCGCC 1 cut(s) 465
DraIII CACNNNGTG 1 cut(s) 424
EaeI YGGCCR 2 cut(s) 331, 405
Ecl136II GAGCTC 1 cut(s) 353
Eco130I CCWWGG 2 cut(s) 257, 402
Eco24I GRGCYC 2 cut(s) 355, 492
Eco53kI GAGCTC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 216
EcoICRI GAGCTC 1 cut(s) 353
EcoT14I CCWWGG 2 cut(s) 257, 402
EcoT38I GRGCYC 2 cut(s) 355, 492
EgeI GGCGCC 1 cut(s) 465
EheI GGCGCC 1 cut(s) 465
ErhI CCWWGG 2 cut(s) 257, 402
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 2 cut(s) 406, 476
FaiI YATR 7 cut(s) 53, 283, 390, 404, 422, 474, 525
FatI CATG 2 cut(s) 402, 472
FauI CCCGC 1 cut(s) 150
FokI GGATG 3 cut(s) 188, 253, 385
FriOI GRGCYC 2 cut(s) 355, 492
FspBI CTAG 4 cut(s) 258, 383, 468, 516
GlaI GCGC 1 cut(s) 465
HaeII RGCGCY 1 cut(s) 467
HaeIII GGCC 2 cut(s) 333, 407
HhaI GCGC 1 cut(s) 466
Hin1I GRCGYC 1 cut(s) 464
Hin1II CATG 2 cut(s) 406, 476
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 1 cut(s) 70
HpaI GTTAAC 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 2 cut(s) 69, 532
Hpy8I GTNNAC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 3 cut(s) 117, 170, 418
Hsp92I GRCGYC 1 cut(s) 464
Hsp92II CATG 2 cut(s) 406, 476
HspAI GCGC 1 cut(s) 464
KasI GGCGCC 1 cut(s) 463
KspAI GTTAAC 1 cut(s) 129
LpnPI CCDG 4 cut(s) 159, 206, 299, 505
MaeI CTAG 4 cut(s) 258, 383, 468, 516
MboII GAAGA 2 cut(s) 6, 514
MhlI GDGCHC 2 cut(s) 355, 492
MlsI TGGCCA 2 cut(s) 333, 407
MluCI AATT 5 cut(s) 30, 37, 108, 184, 449
MluNI TGGCCA 2 cut(s) 333, 407
Mly113I GGCGCC 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 4 cut(s) 91, 198, 280, 538
Mox20I TGGCCA 2 cut(s) 333, 407
MscI TGGCCA 2 cut(s) 333, 407
MseI TTAA 8 cut(s) 122, 128, 158, 243, 252, 278, 347, 360
MslI CAYNNNNRTG 1 cut(s) 413
Msp20I TGGCCA 2 cut(s) 333, 407
NarI GGCGCC 1 cut(s) 464
NcoI CCATGG 1 cut(s) 402
NlaIII CATG 2 cut(s) 406, 476
NlaIV GGNNCC 3 cut(s) 27, 140, 465
NspI RCATGY 1 cut(s) 476
PciI ACATGT 1 cut(s) 472
PfeI GAWTC 1 cut(s) 70
PluTI GGCGCC 1 cut(s) 467
PscI ACATGT 1 cut(s) 472
Psp124BI GAGCTC 1 cut(s) 355
PspN4I GGNNCC 3 cut(s) 27, 140, 465
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
RseI CAYNNNNRTG 1 cut(s) 413
SacI GAGCTC 1 cut(s) 355
SaqAI TTAA 8 cut(s) 122, 128, 158, 243, 252, 278, 347, 360
ScaI AGTACT 1 cut(s) 520
SduI GDGCHC 2 cut(s) 355, 492
SfoI GGCGCC 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 413
Sse9I AATT 5 cut(s) 30, 37, 108, 184, 449
SsiI CCGC 1 cut(s) 143
SspDI GGCGCC 1 cut(s) 463
SspMI CTAG 4 cut(s) 258, 383, 468, 516
SstI GAGCTC 1 cut(s) 355
StyI CCWWGG 2 cut(s) 257, 402
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 1 cut(s) 272
TasI AATT 5 cut(s) 30, 37, 108, 184, 449
TatI WGTACW 1 cut(s) 518
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 8 cut(s) 122, 128, 158, 243, 252, 278, 347, 360
Tru9I TTAA 8 cut(s) 122, 128, 158, 243, 252, 278, 347, 360
TscAI CASTG 1 cut(s) 199
TspRI CASTG 1 cut(s) 199
XceI RCATGY 1 cut(s) 476
XmaJI CCTAGG 1 cut(s) 257
XspI CTAG 4 cut(s) 258, 383, 468, 516
ZrmI AGTACT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.