Rh2AG308200

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0005538
Physical Location & Seq
Reverse (-)
39130574 .. 39131775
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG308200.1

Sequence Viewer

Length: 438 bp
ATGCAAGTTGAAAAGCAAGGCAAAGAGCATGAATTGTGGTCAAAACATTCTGATTCTGGATTGAATACTGAGCTGTTGGAACTTACTCATGCCGCTGATGATATGATTATTCCTCAATCTAAAGAAATTAAGCAGCTGCTTAAGGCTGTTACATTTATCTGCACCTTCAAGCAAATTAACAAGTTTCCCCCAGTACCACTCTTGAAAGAATTTGTGGAGGATGCAAAGAAGTCTTGCACTGGAATTTTCGGTAAAGAGATATCACATGATGTAAAGGAAAAGGTTGTAGATGACCTAATAGCTTATCTAAAAGCTGTGGTTCAGTGCATTGAAGATCACAGCCTCCAGTCGCAGTACCCACCAACTGACATTATGATGGAAATTCAAGGGCTTGGGGAACTCTCCGAAGCTGCTGCTATCTCTTCCGTCCAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

145

Amino Acids

16.23

Weight (kDa)

5.07

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 42 - 132 6.5e-18 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 93
AcsI RAATTY 3 cut(s) 209, 243, 381
AfaI GTAC 2 cut(s) 195, 356
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 6 cut(s) 11, 64, 169, 205, 332, 386
AluBI AGCT 5 cut(s) 73, 136, 302, 314, 410
AluI AGCT 5 cut(s) 73, 136, 302, 314, 410
ApeKI GCWGC 4 cut(s) 133, 136, 410, 413
ApoI RAATTY 3 cut(s) 209, 243, 381
BbvI GCAGC 4 cut(s) 123, 145, 397, 400
BccI CCATC 1 cut(s) 370
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BfrI CTTAAG 1 cut(s) 140
BisI GCNGC 5 cut(s) 93, 134, 137, 411, 414
BlsI GCNGC 5 cut(s) 94, 135, 138, 412, 415
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 329
Bse1I ACTGG 3 cut(s) 191, 244, 346
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 3 cut(s) 191, 244, 346
BseXI GCAGC 4 cut(s) 123, 145, 397, 400
BsgI GTGCAG 1 cut(s) 145
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 61
BspTI CTTAAG 1 cut(s) 140
BsrI ACTGG 3 cut(s) 191, 244, 346
BssMI GATC 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 427
BstAFI CTTAAG 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstV1I GCAGC 4 cut(s) 123, 145, 397, 400
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 237, 329
Csp6I GTAC 2 cut(s) 194, 355
CviAII CATG 3 cut(s) 29, 89, 266
CviJI RGCY 8 cut(s) 73, 136, 146, 302, 314, 342, 391, 410
CviKI_1 RGCY 8 cut(s) 73, 136, 146, 302, 314, 342, 391, 410
CviQI GTAC 2 cut(s) 194, 355
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 427
EarI CTCTTC 1 cut(s) 427
Eco32I GATATC 1 cut(s) 261
EcoRV GATATC 1 cut(s) 261
FaeI CATG 3 cut(s) 32, 92, 269
FaiI YATR 5 cut(s) 30, 90, 104, 267, 374
FatI CATG 3 cut(s) 28, 88, 265
Fnu4HI GCNGC 5 cut(s) 93, 134, 137, 411, 414
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 5 cut(s) 93, 134, 137, 411, 414
GluI GCNGC 5 cut(s) 93, 134, 137, 411, 414
GsuI CTGGAG 1 cut(s) 329
Hin1II CATG 3 cut(s) 32, 92, 269
HinfI GANTC 1 cut(s) 53
Hpy188I TCNGA 2 cut(s) 52, 406
Hpy188III TCNNGA 2 cut(s) 57, 202
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 5 cut(s) 4, 162, 224, 237, 327
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 3 cut(s) 32, 92, 269
Kzo9I GATC 1 cut(s) 334
LpnPI CCDG 4 cut(s) 42, 204, 225, 359
Lsp1109I GCAGC 4 cut(s) 123, 145, 397, 400
LweI GCATC 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 2 cut(s) 344, 414
MluCI AATT 6 cut(s) 32, 126, 174, 209, 243, 381
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 3 cut(s) 123, 211, 353
MseI TTAA 3 cut(s) 129, 141, 177
MslI CAYNNNNRTG 1 cut(s) 374
MspA1I CMGCKG 2 cut(s) 95, 136
MspCI CTTAAG 1 cut(s) 140
NdeII GATC 1 cut(s) 334
NlaIII CATG 3 cut(s) 32, 92, 269
PfeI GAWTC 1 cut(s) 53
PkrI GCNGC 5 cut(s) 94, 135, 138, 412, 415
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 2 cut(s) 195, 356
RsaNI GTAC 2 cut(s) 194, 355
RseI CAYNNNNRTG 1 cut(s) 374
SaqAI TTAA 3 cut(s) 129, 141, 177
SatI GCNGC 5 cut(s) 93, 134, 137, 411, 414
Sau3AI GATC 1 cut(s) 334
SetI ASST 8 cut(s) 75, 138, 167, 285, 297, 304, 316, 412
SfaNI GCATC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 6 cut(s) 32, 126, 174, 209, 243, 381
SsiI CCGC 1 cut(s) 93
TasI AATT 6 cut(s) 32, 126, 174, 209, 243, 381
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 3 cut(s) 129, 141, 177
Tru9I TTAA 3 cut(s) 129, 141, 177
TscAI CASTG 2 cut(s) 244, 329
TseI GCWGC 4 cut(s) 133, 136, 410, 413
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 415
TspRI CASTG 2 cut(s) 244, 329
Vha464I CTTAAG 1 cut(s) 140
XapI RAATTY 3 cut(s) 209, 243, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.