Rw2G024830

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005538
Physical Location & Seq
Reverse (-)
36894203 .. 36897037
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024830.1

Sequence Viewer

Length: 855 bp
ATGTATGTTGTGGTGCTTGAAATGGTATCCATTGTTAATTGGGATGGTATTAGCTTGTCTGATATTCCAGAAAAGAGGAGGAAGGAGTTTGAGGCTACGGAAATAGAACTGAAAGAGGTTCAGGGGTGTATTGAGTTGAAGGAGAGGCAATTAGATGGGATTTTGAAGTCGATTCAGGAGCACACGAAAGAATGTGATTTGAAAGGAAAGCAAGTTAAGGCATTGCAGAGGTCCATTGACAAAATGAGAGAAAGAGATGGAATTAGTGGTCTCCAATTGGAAAGAGAAGAGCTACTTGCTGTACTTGGAAAGTCAATAGATGAATCTGAAAAGATCTTCAACACATTCCACAAGTCGGTTCAAGAGCAGAAAATAAAGCATTTGGATTCACCCTCCCATACACTCCATATAAGAGAGATGCAAGTTGAAAAGCAAGGCAAAGAGCATGAATTGTGGTCAAAACATTCTGATTCTGGATTGAATACTGAGCTGTTGGAACTTACTCATGCCGCTGATGATATGATTATTCCTCAATCTAAAGAAATTAAGCAGCTGCTTAAGGCTGTTACATTTATCTGCACCTTCAAGCAAATTAACAAGTTTCCCCCAGTACCACTCTTGAAAGAATTTGTGGAGGATGCAAAGAAGTCTTGCGCTGGAATTTTCAGTAAAGAGATATCACATGATGTAAAGGAAAAGGTTGTAGATGACCTAATAGCTTATCTAAAAGCTGTGGTTCAGTGCATTGAAGATCACAGCCTCCAGTCGCAGTACCCACCAACTGACATTATGATGGAAATTCAAGGGCTTGGGGAACTCTCCGAAGCTGCTGCTATCTCTTCCGTCCAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

284

Amino Acids

32.33

Weight (kDa)

5.4

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 182 - 271 2.9e-17 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 510
AcsI RAATTY 3 cut(s) 626, 660, 798
AfaI GTAC 3 cut(s) 303, 612, 773
AfiI CCNNNNNNNGG 1 cut(s) 355
AflII CTTAAG 1 cut(s) 557
AluBI AGCT 7 cut(s) 54, 292, 490, 553, 719, 731, 827
AluI AGCT 7 cut(s) 54, 292, 490, 553, 719, 731, 827
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 275
ApeKI GCWGC 4 cut(s) 550, 553, 827, 830
ApoI RAATTY 3 cut(s) 626, 660, 798
AspLEI GCGC 1 cut(s) 656
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 381
AvaII GGWCC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 4 cut(s) 540, 562, 814, 817
BccI CCATC 4 cut(s) 38, 149, 251, 787
BcgI CGANNNNNNTGC 2 cut(s) 812, 846
BciVI GTATCC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 275
BfrI CTTAAG 1 cut(s) 557
BfuI GTATCC 1 cut(s) 37
BglII AGATCT 1 cut(s) 333
BisI GCNGC 5 cut(s) 510, 551, 554, 828, 831
BlsI GCNGC 5 cut(s) 511, 552, 555, 829, 832
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 602
BmsI GCATC 2 cut(s) 408, 628
BmuI ACTGGG 1 cut(s) 602
BpmI CTGGAG 1 cut(s) 746
BsaI GGTCTC 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 608, 763
Bse3DI GCAATG 1 cut(s) 221
BseGI GGATG 2 cut(s) 49, 643
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 2 cut(s) 608, 763
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 4 cut(s) 540, 562, 814, 817
BsgI GTGCAG 1 cut(s) 562
BsiHKAI GWGCWC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 333, 751
BspACI CCGC 1 cut(s) 510
BspCNI CTCAG 1 cut(s) 478
BspQI GCTCTTC 1 cut(s) 282
BspTI CTTAAG 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 2 cut(s) 608, 763
BssMI GATC 2 cut(s) 333, 751
Bst6I CTCTTC 2 cut(s) 282, 844
BstAFI CTTAAG 1 cut(s) 557
BstDEI CTNAG 1 cut(s) 486
BstF5I GGATG 2 cut(s) 49, 643
BstHHI GCGC 1 cut(s) 656
BstKTI GATC 2 cut(s) 336, 754
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 2 cut(s) 333, 751
BstV1I GCAGC 4 cut(s) 540, 562, 814, 817
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
BsuI GTATCC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 49, 643
BtsIMutI CAGTG 1 cut(s) 746
CfoI GCGC 1 cut(s) 656
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 3 cut(s) 302, 611, 772
CviAII CATG 3 cut(s) 446, 506, 683
CviQI GTAC 3 cut(s) 302, 611, 772
DdeI CTNAG 1 cut(s) 486
DpnI GATC 2 cut(s) 335, 753
DpnII GATC 2 cut(s) 333, 751
Eam1104I CTCTTC 2 cut(s) 282, 844
EarI CTCTTC 2 cut(s) 282, 844
Eco31I GGTCTC 1 cut(s) 275
Eco32I GATATC 1 cut(s) 678
Eco47I GGWCC 1 cut(s) 231
EcoRV GATATC 1 cut(s) 678
FaeI CATG 3 cut(s) 449, 509, 686
FaiI YATR 9 cut(s) 6, 399, 408, 410, 447, 507, 521, 684, 791
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FatI CATG 3 cut(s) 445, 505, 682
Fnu4HI GCNGC 5 cut(s) 510, 551, 554, 828, 831
FokI GGATG 2 cut(s) 56, 650
Fsp4HI GCNGC 5 cut(s) 510, 551, 554, 828, 831
GlaI GCGC 1 cut(s) 655
GluI GCNGC 5 cut(s) 510, 551, 554, 828, 831
GsuI CTGGAG 1 cut(s) 746
HhaI GCGC 1 cut(s) 656
Hin1II CATG 3 cut(s) 449, 509, 686
Hin6I GCGC 1 cut(s) 654
HinP1I GCGC 1 cut(s) 654
HinfI GANTC 4 cut(s) 172, 323, 386, 470
HphI GGTGA 1 cut(s) 381
Hpy188I TCNGA 4 cut(s) 61, 328, 469, 823
Hpy188III TCNNGA 5 cut(s) 68, 176, 362, 474, 619
HpyAV CCTTC 3 cut(s) 76, 133, 592
HpyCH4V TGCA 5 cut(s) 226, 421, 579, 641, 744
HpyF3I CTNAG 1 cut(s) 486
Hsp92II CATG 3 cut(s) 449, 509, 686
HspAI GCGC 1 cut(s) 654
Kzo9I GATC 2 cut(s) 333, 751
LguI GCTCTTC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 7 cut(s) 81, 107, 161, 459, 621, 642, 776
Lsp1109I GCAGC 4 cut(s) 540, 562, 814, 817
LweI GCATC 2 cut(s) 408, 628
MaeIII GTNAC 1 cut(s) 565
MalI GATC 2 cut(s) 335, 753
MboI GATC 2 cut(s) 333, 751
MboII GAAGA 4 cut(s) 299, 328, 761, 831
MfeI CAATTG 1 cut(s) 275
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 474
MseI TTAA 5 cut(s) 36, 216, 546, 558, 594
MslI CAYNNNNRTG 1 cut(s) 791
MspA1I CMGCKG 2 cut(s) 512, 553
MspCI CTTAAG 1 cut(s) 557
MunI CAATTG 1 cut(s) 275
NdeII GATC 2 cut(s) 333, 751
NlaIII CATG 3 cut(s) 449, 509, 686
PciSI GCTCTTC 1 cut(s) 282
PfeI GAWTC 4 cut(s) 172, 323, 386, 470
PkrI GCNGC 5 cut(s) 511, 552, 555, 829, 832
PspPI GGNCC 1 cut(s) 231
PsuI RGATCY 1 cut(s) 333
PvuII CAGCTG 1 cut(s) 553
RsaI GTAC 3 cut(s) 303, 612, 773
RsaNI GTAC 3 cut(s) 302, 611, 772
RseI CAYNNNNRTG 1 cut(s) 791
SapI GCTCTTC 1 cut(s) 282
SaqAI TTAA 5 cut(s) 36, 216, 546, 558, 594
SatI GCNGC 5 cut(s) 510, 551, 554, 828, 831
Sau3AI GATC 2 cut(s) 333, 751
Sau96I GGNCC 1 cut(s) 231
SduI GDGCHC 1 cut(s) 183
SfaNI GCATC 2 cut(s) 408, 628
SinI GGWCC 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 791
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
SsiI CCGC 1 cut(s) 510
TaqI TCGA 1 cut(s) 170
TatI WGTACW 1 cut(s) 301
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 4 cut(s) 172, 323, 386, 470
Tru1I TTAA 5 cut(s) 36, 216, 546, 558, 594
Tru9I TTAA 5 cut(s) 36, 216, 546, 558, 594
TscAI CASTG 1 cut(s) 746
TseI GCWGC 4 cut(s) 550, 553, 827, 830
TspDTI ATGAA 2 cut(s) 336, 462
TspGWI ACGGA 2 cut(s) 113, 832
TspRI CASTG 1 cut(s) 746
Vha464I CTTAAG 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 231
XapI RAATTY 3 cut(s) 626, 660, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.