Rmu_co8454967.1_g000001

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8454967.1
OG0005538
Physical Location & Seq
Forward (+)
1 .. 1271
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8454967.1_g000001.1.cds

Sequence Viewer

Length: 413 bp
cagatattatttggaatctcattgaaagaaagcaactgattgaggctgttagatttatctgcaccttcaagctaaatgacgagtttcccccagtaccactcttgatagaatttgtggaggatgcaaagaagtgttgcagtgaaatgctcagtgaagtgaaatcacatgatgaaaaggaaaagtttgtggatgaccgaatagctgatctaagagctgtggttcaatgcattgaagaccacggcctcgagtcccaataccagtcaatcgacattttgatgcatattcaaggtcttcagagactaaaggagaatggaaaattggtgctgtctcttccacccagagttgaaaaacaaaagcagagaaaagggaggaaacaaagttccagcacatatcagctgcgtaaaagaacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

136

Amino Acids

15.97

Weight (kDa)

8.37

Isoelectric Point (pI)

66.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 277
AfaI GTAC 1 cut(s) 95
AgsI TTSAA 6 cut(s) 25, 69, 223, 232, 286, 346
AjuI GAANNNNNNNTTGG 2 cut(s) 301, 333
AloI GAACNNNNNNTCC 2 cut(s) 363, 395
AluBI AGCT 4 cut(s) 72, 202, 214, 396
AluI AGCT 4 cut(s) 72, 202, 214, 396
Alw26I GTCTC 2 cut(s) 291, 332
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 396
ApoI RAATTY 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 244
BbsI GAAGAC 2 cut(s) 239, 283
BbvI GCAGC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 291, 332
BisI GCNGC 1 cut(s) 397
BlsI GCNGC 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 85
BmsI GCATC 2 cut(s) 111, 266
BmuI ACTGGG 1 cut(s) 85
BpiI GAAGAC 2 cut(s) 239, 283
BsaJI CCNNGG 1 cut(s) 237
Bse1I ACTGG 2 cut(s) 91, 258
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 126, 195
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 91, 258
BseXI GCAGC 1 cut(s) 383
BsgI GTGCAG 1 cut(s) 45
BshFI GGCC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 244
BslFI GGGAC 1 cut(s) 234
BsmAI GTCTC 2 cut(s) 291, 332
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 244
Bsp143I GATC 1 cut(s) 204
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 161
BsrI ACTGG 2 cut(s) 91, 258
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 1 cut(s) 204
Bst6I CTCTTC 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 148, 208
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 126, 195
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 2 cut(s) 291, 332
BstMBI GATC 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 383
BstV2I GAAGAC 2 cut(s) 239, 283
BsuRI GGCC 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 2 cut(s) 126, 195
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 144, 156
Csp6I GTAC 1 cut(s) 94
CviAII CATG 1 cut(s) 166
CviJI RGCY 6 cut(s) 46, 72, 202, 214, 242, 396
CviKI_1 RGCY 6 cut(s) 46, 72, 202, 214, 242, 396
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 148, 208
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 244
EcoT22I ATGCAT 2 cut(s) 229, 281
FaeI CATG 1 cut(s) 169
FaiI YATR 4 cut(s) 167, 281, 390, 411
FaqI GGGAC 1 cut(s) 234
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 397
FokI GGATG 2 cut(s) 133, 202
Fsp4HI GCNGC 1 cut(s) 397
GluI GCNGC 1 cut(s) 397
HaeIII GGCC 1 cut(s) 242
Hin1II CATG 1 cut(s) 169
HinfI GANTC 2 cut(s) 15, 247
Hpy188I TCNGA 1 cut(s) 296
Hpy188III TCNNGA 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 75
HpyCH4V TGCA 5 cut(s) 62, 124, 137, 227, 279
HpyF3I CTNAG 2 cut(s) 148, 208
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 1 cut(s) 204
LpnPI CCDG 4 cut(s) 104, 271, 351, 396
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 2 cut(s) 111, 266
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 3 cut(s) 244, 283, 322
MluCI AATT 2 cut(s) 109, 316
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 4 cut(s) 36, 111, 253, 362
Mph1103I ATGCAT 2 cut(s) 229, 281
MslI CAYNNNNRTG 1 cut(s) 274
MspA1I CMGCKG 1 cut(s) 396
NdeII GATC 1 cut(s) 204
NlaIII CATG 1 cut(s) 169
NsiI ATGCAT 2 cut(s) 229, 281
PaeR7I CTCGAG 1 cut(s) 244
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 398
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
PspXI VCTCGAGB 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 396
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 274
SatI GCNGC 1 cut(s) 397
Sau3AI GATC 1 cut(s) 204
SchI GAGTC 1 cut(s) 256
SetI ASST 6 cut(s) 67, 74, 204, 216, 291, 398
SfaNI GCATC 2 cut(s) 111, 266
Sfr274I CTCGAG 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 2 cut(s) 109, 316
TaqI TCGA 2 cut(s) 245, 266
TaqII GACCGA 1 cut(s) 209
TasI AATT 2 cut(s) 109, 316
TfiI GAWTC 1 cut(s) 15
TscAI CASTG 2 cut(s) 144, 156
TseI GCWGC 1 cut(s) 396
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 2 cut(s) 144, 156
XapI RAATTY 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 244
Zsp2I ATGCAT 2 cut(s) 229, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.