FvH4_6g04451

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005538
Physical Location & Seq
Forward (+)
2440519 .. 2443091
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04451.t1

Sequence Viewer

Length: 1275 bp
ATGCTGACGTGGTCCTCCGGGAGGAAAAAAAAATTTCTCACCTTTCTGATTCCTCTCCGCCATTCACCTCCGTACATTTCTAGGGTTTCGACAATCGGAGGAGAGCAGAAAATGGAGGAGCTGACCGCTCCGGCGACGAAAGACTCAGACTTGAAGCAGCGGCAGAGGAGCTTCGGCAAAGCGCACAACACCTTCCAAACGCAGGCGGCTTCGCTCGTCGGGCTGACCCGCCAGTTCAAGGAGCTCCAGGCGCGGTGGGGGTCCACCGAGGCCAACCTCGAGACACGGTTCCGAGAAGTCCGCGACCGGGAAAGGGAGGTCGGCGCCAGAGAGAAGAAGCTGGAAGAGAGAAAGGCGGAGCTGGAAGCGCTGGAGAAGCAGCTGGAATCGGTTAAGTACCACTTGAGTTTTCTGAAGCCGTTGATTGTTAAACATGTGGAAGAGCTTGATTTGTTGAAGGTGAGGGTGACTGAGAAGAAGGAAGAGTTTGATTTGGTTGAAAAGAGGGGTTTGGAATCGGCCGAGAGATTGGGAATTTTGGAGAAATGTGTGGTGGAGAAGGCGAAAGAGGTTGCGGCCAAGGAGGTGGAGCTCAGAGTTGTGGAAGGGAAGATTGAGGATAGGAAGAGAGAATGTGGGTTGAAGGAAGAGGAGATTGAGGCGAAACGGAGGTGTTATGATGAATGGGAGAAGGAGATGGAAATGAAGAGAGGGGAGCTTGTTGATCAGGTCGATGCAATGAAGATATTAGTTAGAGAGAAGGGGAAGGAGTGTGAGTTGATTGAGAATCGGGTTTTGGAGTCCGAAAAAAAAGAGTATTATTTTGGGAGATGTGTGGAACAGAGGAGGAAGGAGTTTGAGAATAAGGAGAAGGTACTGAAGGAGCGGATTCGGTTAAAGGAGAGGGAGTTAGATGGGGTGTTGAAGTTGATTCAGGAGCAGACGAAAGAATGTGATGTGAAAGGGAAGCAAGTTATGGCATTGCAGATGTCCATTGAGAAATGTGAGAAGGAGATGGAACTGAAATGGGAGGAGTGGTCTTGTAAGCTTGAGTTGAAAGAGAGGGAGCTAGAAAGGTTGTTTGAGAAGTTTGAGTTGAGAGGGAAACAATTTGAGCCGATTGTTGAAGAGATTCGTGTTATTGATAAGAGGGTGGATGAATGCTTAAATGAGGGTCTAATTAAAGAGAGGTACTTGCAGTCAAGTGAAAAATCGATACAAGAACGAGAAAGGGCTTTGGATTCACTGATTCAGTGTCCCATGATCTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

425

Amino Acids

50.41

Weight (kDa)

7.47

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 323
AccBSI CCGCTC 2 cut(s) 128, 886
AccII CGCG 2 cut(s) 253, 303
AcoI YGGCCR 2 cut(s) 519, 576
AcsI RAATTY 2 cut(s) 32, 534
AcuI CTGAAG 2 cut(s) 434, 899
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 4 cut(s) 74, 398, 876, 1193
AfeI AGCGCT 1 cut(s) 369
AfiI CCNNNNNNNGG 5 cut(s) 21, 202, 238, 307, 313
AflIII ACRYGT 1 cut(s) 433
AgsI TTSAA 8 cut(s) 154, 238, 457, 500, 643, 925, 1057, 1127
AjiI CACGTC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 779, 811
Alw21I GWGCWC 2 cut(s) 246, 594
Alw26I GTCTC 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 278
Aor51HI AGCGCT 1 cut(s) 369
AoxI GGCC 3 cut(s) 270, 519, 576
ApeKI GCWGC 2 cut(s) 157, 379
ApoI RAATTY 2 cut(s) 32, 534
Asp700I GAANNNNTTC 1 cut(s) 1131
AspLEI GCGC 4 cut(s) 184, 253, 326, 370
AspS9I GGNCC 2 cut(s) 12, 261
AsuC2I CCSGG 2 cut(s) 19, 308
AsuHPI GGTGA 4 cut(s) 31, 57, 472, 478
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 2 cut(s) 12, 261
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 2 cut(s) 246, 594
Bbv12I GWGCWC 2 cut(s) 246, 594
BbvI GCAGC 2 cut(s) 169, 391
BccI CCATC 3 cut(s) 691, 908, 1009
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 248
BclI TGATCA 1 cut(s) 724
BcnI CCSGG 2 cut(s) 19, 308
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 2 cut(s) 81, 1070
BfoI RGCGCY 2 cut(s) 327, 371
BisI GCNGC 5 cut(s) 158, 161, 207, 380, 576
BlsI GCNGC 5 cut(s) 159, 162, 208, 381, 577
Bme1390I CCNGG 3 cut(s) 19, 248, 308
Bme18I GGWCC 2 cut(s) 12, 261
BmeT110I CYCGRG 1 cut(s) 278
BmgBI CACGTC 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 12, 261
BmiI GGNNCC 3 cut(s) 262, 290, 325
BmrFI CCNGG 3 cut(s) 19, 248, 308
BmsI GCATC 1 cut(s) 724
BpmI CTGGAG 2 cut(s) 230, 392
BpuEI CTTGAG 2 cut(s) 424, 1070
BpuMI CCSGG 2 cut(s) 19, 308
Bsa29I ATCGAT 1 cut(s) 1214
BsaHI GRCGYC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 267, 579
BsaXI ACNNNNNCTCC 6 cut(s) 761, 791, 893, 923, 1022, 1052
Bsc4I CCNNNNNNNGG 5 cut(s) 21, 202, 238, 307, 313
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 2 cut(s) 744, 980
BseBI CCWGG 1 cut(s) 248
BseCI ATCGAT 1 cut(s) 1214
BseDI CCNNGG 2 cut(s) 267, 579
BseGI GGATG 1 cut(s) 1162
BseLI CCNNNNNNNGG 5 cut(s) 21, 202, 238, 307, 313
BseMI GCAATG 2 cut(s) 744, 980
BseMII CTCAG 3 cut(s) 159, 462, 607
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 6 cut(s) 114, 131, 181, 665, 859, 1046
BseX3I CGGCCG 1 cut(s) 519
BseXI GCAGC 2 cut(s) 169, 391
Bsh1236I CGCG 2 cut(s) 253, 303
Bsh1285I CGRYCG 2 cut(s) 307, 522
BshFI GGCC 3 cut(s) 272, 521, 578
BshNI GGYRCC 1 cut(s) 323
BshVI ATCGAT 1 cut(s) 1214
BsiEI CGRYCG 2 cut(s) 307, 522
BsiHKAI GWGCWC 2 cut(s) 246, 594
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 3 cut(s) 18, 131, 307
BslFI GGGAC 1 cut(s) 1242
BslI CCNNNNNNNGG 5 cut(s) 21, 202, 238, 307, 313
BsmAI GTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 1242
BsmI GAATGC 1 cut(s) 1166
BsnI GGCC 3 cut(s) 272, 521, 578
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 246, 594
Bsp143I GATC 2 cut(s) 724, 1263
BspANI GGCC 3 cut(s) 272, 521, 578
BspCNI CTCAG 3 cut(s) 158, 463, 606
BspDI ATCGAT 1 cut(s) 1214
BspFNI CGCG 2 cut(s) 253, 303
BspLI GGNNCC 3 cut(s) 262, 290, 325
BspQI GCTCTTC 1 cut(s) 435
BspT107I GGYRCC 1 cut(s) 323
BsrBI CCGCTC 2 cut(s) 128, 886
BsrDI GCAATG 2 cut(s) 744, 980
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 267, 579
BssMI GATC 2 cut(s) 724, 1263
BssNI GRCGYC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 579
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 288
Bst6I CTCTTC 7 cut(s) 339, 435, 477, 620, 642, 701, 1122
BstACI GRCGYC 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 145, 471, 593
BstENI CCTNNNNNAGG 1 cut(s) 19
BstF5I GGATG 1 cut(s) 1162
BstFNI CGCG 2 cut(s) 253, 303
BstH2I RGCGCY 2 cut(s) 327, 371
BstHHI GCGC 4 cut(s) 184, 253, 326, 370
BstKTI GATC 2 cut(s) 727, 1266
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 2 cut(s) 724, 1263
BstMCI CGRYCG 2 cut(s) 307, 522
BstMWI GCNNNNNNNGC 4 cut(s) 220, 250, 367, 376
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 437
BstSCI CCNGG 3 cut(s) 17, 246, 306
BstUI CGCG 2 cut(s) 253, 303
BstV1I GCAGC 2 cut(s) 169, 391
BstXI CCANNNNNNTGG 1 cut(s) 586
BstZI CGGCCG 1 cut(s) 519
Bsu15I ATCGAT 1 cut(s) 1214
BsuRI GGCC 3 cut(s) 272, 521, 578
BsuTUI ATCGAT 1 cut(s) 1214
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 1162
BtsIMutI CAGTG 2 cut(s) 1244, 1259
Cac8I GCNNGC 1 cut(s) 204
CfoI GCGC 4 cut(s) 184, 253, 326, 370
Cfr13I GGNCC 2 cut(s) 12, 261
ClaI ATCGAT 1 cut(s) 1214
Csp6I GTAC 4 cut(s) 73, 397, 875, 1192
CviAII CATG 2 cut(s) 434, 1261
CviQI GTAC 4 cut(s) 73, 397, 875, 1192
DdeI CTNAG 3 cut(s) 145, 471, 593
DinI GGCGCC 1 cut(s) 325
DpnI GATC 2 cut(s) 726, 1265
DpnII GATC 2 cut(s) 724, 1263
EaeI YGGCCR 2 cut(s) 519, 576
EagI CGGCCG 1 cut(s) 519
Eam1104I CTCTTC 7 cut(s) 339, 435, 477, 620, 642, 701, 1122
EarI CTCTTC 7 cut(s) 339, 435, 477, 620, 642, 701, 1122
EciI GGCGGA 2 cut(s) 47, 371
Ecl136II GAGCTC 2 cut(s) 244, 592
EclXI CGGCCG 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 579
Eco24I GRGCYC 2 cut(s) 246, 594
Eco47I GGWCC 2 cut(s) 12, 261
Eco47III AGCGCT 1 cut(s) 369
Eco52I CGGCCG 1 cut(s) 519
Eco53kI GAGCTC 2 cut(s) 244, 592
Eco57I CTGAAG 2 cut(s) 434, 899
Eco88I CYCGRG 1 cut(s) 278
EcoICRI GAGCTC 2 cut(s) 244, 592
EcoNI CCTNNNNNAGG 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 579
EcoT38I GRGCYC 2 cut(s) 246, 594
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 2 cut(s) 437, 1264
FaiI YATR 4 cut(s) 435, 678, 977, 1262
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 1242
FatI CATG 2 cut(s) 433, 1260
FauI CCCGC 1 cut(s) 236
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 5 cut(s) 158, 161, 207, 380, 576
FokI GGATG 1 cut(s) 1169
FriOI GRGCYC 2 cut(s) 246, 594
Fsp4HI GCNGC 5 cut(s) 158, 161, 207, 380, 576
FspBI CTAG 2 cut(s) 81, 1070
GlaI GCGC 4 cut(s) 183, 252, 325, 369
GluI GCNGC 5 cut(s) 158, 161, 207, 380, 576
GsuI CTGGAG 2 cut(s) 230, 392
HaeII RGCGCY 2 cut(s) 327, 371
HaeIII GGCC 3 cut(s) 272, 521, 578
HapII CCGG 3 cut(s) 18, 131, 307
HhaI GCGC 4 cut(s) 184, 253, 326, 370
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 2 cut(s) 437, 1264
Hin6I GCGC 4 cut(s) 182, 251, 324, 368
HinP1I GCGC 4 cut(s) 182, 251, 324, 368
HindIII AAGCTT 1 cut(s) 1046
HpaII CCGG 3 cut(s) 18, 131, 307
HphI GGTGA 4 cut(s) 31, 57, 472, 478
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 7 cut(s) 48, 98, 148, 293, 414, 596, 805
Hpy188III TCNNGA 3 cut(s) 280, 935, 1267
Hpy8I GTNNAC 1 cut(s) 264
Hpy99I CGWCG 2 cut(s) 139, 221
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 3 cut(s) 737, 985, 1198
HpyF10VI GCNNNNNNNGC 4 cut(s) 220, 250, 367, 376
HpyF3I CTNAG 3 cut(s) 145, 471, 593
HpySE526I ACGT 1 cut(s) 8
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 2 cut(s) 437, 1264
HspAI GCGC 4 cut(s) 182, 251, 324, 368
KasI GGCGCC 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 2 cut(s) 724, 1263
LguI GCTCTTC 1 cut(s) 435
Lsp1109I GCAGC 2 cut(s) 169, 391
LweI GCATC 1 cut(s) 724
MaeI CTAG 2 cut(s) 81, 1070
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 466
MalI GATC 2 cut(s) 726, 1265
MbiI CCGCTC 2 cut(s) 128, 886
MboI GATC 2 cut(s) 724, 1263
MhlI GDGCHC 2 cut(s) 246, 594
MluCI AATT 4 cut(s) 32, 534, 1109, 1179
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 2 cut(s) 137, 809
MroXI GAANNNNTTC 1 cut(s) 1131
MseI TTAA 5 cut(s) 393, 429, 896, 1166, 1182
MspA1I CMGCKG 2 cut(s) 160, 382
MspI CCGG 3 cut(s) 18, 131, 307
MspR9I CCNGG 3 cut(s) 19, 248, 308
Mva1269I GAATGC 1 cut(s) 1166
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 2 cut(s) 253, 303
MwoI GCNNNNNNNGC 4 cut(s) 220, 250, 367, 376
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 2 cut(s) 19, 308
NdeII GATC 2 cut(s) 724, 1263
NlaIII CATG 2 cut(s) 437, 1264
NlaIV GGNNCC 3 cut(s) 262, 290, 325
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 1 cut(s) 466
NspI RCATGY 1 cut(s) 437
PaeR7I CTCGAG 1 cut(s) 278
PciI ACATGT 1 cut(s) 433
PciSI GCTCTTC 1 cut(s) 435
PctI GAATGC 1 cut(s) 1166
PdmI GAANNNNTTC 1 cut(s) 1131
PfeI GAWTC 9 cut(s) 49, 386, 515, 787, 889, 931, 1132, 1241, 1249
PflFI GACNNNGTC 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 17
PkrI GCNGC 5 cut(s) 159, 162, 208, 381, 577
PleI GAGTC 2 cut(s) 137, 808
PluTI GGCGCC 1 cut(s) 327
PpsI GAGTC 2 cut(s) 137, 808
PscI ACATGT 1 cut(s) 433
Psp124BI GAGCTC 2 cut(s) 246, 594
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 3 cut(s) 262, 290, 325
PspPI GGNCC 2 cut(s) 12, 261
PsyI GACNNNGTC 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 382
RsaI GTAC 4 cut(s) 74, 398, 876, 1193
RsaNI GTAC 4 cut(s) 73, 397, 875, 1192
SacI GAGCTC 2 cut(s) 246, 594
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 5 cut(s) 393, 429, 896, 1166, 1182
SatI GCNGC 5 cut(s) 158, 161, 207, 380, 576
Sau3AI GATC 2 cut(s) 724, 1263
Sau96I GGNCC 2 cut(s) 12, 261
SchI GAGTC 2 cut(s) 137, 809
ScrFI CCNGG 3 cut(s) 19, 248, 308
SduI GDGCHC 2 cut(s) 246, 594
SfaNI GCATC 1 cut(s) 724
SfoI GGCGCC 1 cut(s) 325
Sfr274I CTCGAG 1 cut(s) 278
SinI GGWCC 2 cut(s) 12, 261
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 4 cut(s) 278, 403, 1049, 1267
SmoI CTYRAG 4 cut(s) 278, 403, 1049, 1267
Sse9I AATT 4 cut(s) 32, 534, 1109, 1179
SspDI GGCGCC 1 cut(s) 323
SspMI CTAG 2 cut(s) 81, 1070
SstI GAGCTC 2 cut(s) 246, 594
StyD4I CCNGG 3 cut(s) 17, 246, 306
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 1 cut(s) 11
TaqI TCGA 4 cut(s) 89, 279, 732, 1214
TasI AATT 4 cut(s) 32, 534, 1109, 1179
TauI GCSGC 3 cut(s) 163, 209, 578
TfiI GAWTC 9 cut(s) 49, 386, 515, 787, 889, 931, 1132, 1241, 1249
Tru1I TTAA 5 cut(s) 393, 429, 896, 1166, 1182
Tru9I TTAA 5 cut(s) 393, 429, 896, 1166, 1182
TscAI CASTG 2 cut(s) 1251, 1259
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 2 cut(s) 157, 379
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 4 cut(s) 696, 719, 755, 1173
TspGWI ACGGA 2 cut(s) 60, 682
TspRI CASTG 2 cut(s) 1251, 1259
Tth111I GACNNNGTC 1 cut(s) 10
VpaK11BI GGWCC 2 cut(s) 12, 261
XagI CCTNNNNNAGG 1 cut(s) 19
XapI RAATTY 2 cut(s) 32, 534
XceI RCATGY 1 cut(s) 437
XhoI CTCGAG 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 1131
XspI CTAG 2 cut(s) 81, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.