Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005538

Physical Location & Seq

Genomic Coordinates Reverse (-)

46606257 .. 46607114

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025548

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCGCTGCGAATTAGTCCTCTGGTAAAAGAAGAGGCAATGAAGTTGGCAGGTGATTGGAAGGCTAAGATGACAGTGGGGACTGAGAGTACATTGGAGGTTTTGGGATTTTTGCTGCTTGTCACTGCGTATGGGTTAACCTCTGCTTATGATCCCAAGGACCTTCTTGAGTTGATTTGCCGGCATAAACAGGCATGTCACACACATGGTTTTGCAGATAAGATCAATGAGTTTGCAAAGGATGTAGGGAATTGTTCCACTGAAGTTTGGAGGAAAAGGAAATCGCTGGTTGAAAAGGAGACGGTTGTAGATGGCCAAATAGCTTATTTAAGAGCTCTCGTTAAATGTATCAATGATTACAACCTAGAGTATGAGTTCCCATCCATGGCCATTGAAATGCACATAGTGGAGTTGAGAAAACTAAAGGAGAAATTGAGATGTTTGGCGCCTAGACATGTTGAACAACAAGAGCCCAGAAAAAGGAAGAAACCTAATGCTAGCACTTATGCCTCTGATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

Frigida TEX13

Protein Analysis

174

Amino Acids

19.77

Weight (kDa)

8.74

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frigida	PF07899	4 - 75	2.1e-10	Frigida-like protein
Frigida	PF07899	87 - 144	5.4e-06	Frigida-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04430 FvH4_6g04451 FvH4_6g04560 FvH4_6g04591 FvH4_6g04640 FvH4_6g04640
rosa_chinensis	RchiOBHm_Chr3g0453121
rosa_laevigata	RLG00000018793 RLG00000025536 RLG00000025548
rosa_multiflora	Rmu_co8454967.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430180
rosa_rugosa	Rorug02G0250100 Rorug02G0250200 Rorug02G0646700
rosa_samantha	Rh2AG308200 Rh2BG317000 Rh2BG317100 Rh2CG295100 Rh2DG332200 Rh3AG047900 Rh3AG049200 Rh3BG050400 Rh3CG049300 Rh3CG050500 Rh3DG050100 Rh3DG051200
rosa_wichuraiana	Rw2G024830 Rw3G003770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	445
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	2 cut(s)	313, 387
AcuI	CTGAAG	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	446
AdeI	CACNNNGTG	1 cut(s)	406
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	385, 480
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	3 cut(s)	293, 395, 461
AluBI	AGCT	2 cut(s)	323, 335
AluI	AGCT	2 cut(s)	323, 335
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	2 cut(s)	313, 387
ApeKI	GCWGC	2 cut(s)	7, 115
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	160
BalI	TGGCCA	2 cut(s)	315, 389
BanI	GGYRCC	1 cut(s)	445
BanII	GRGCYC	2 cut(s)	337, 474
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	2 cut(s)	305, 388
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	3 cut(s)	365, 450, 498
BfoI	RGCGCY	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	41
BisI	GCNGC	2 cut(s)	8, 116
BlsI	GCNGC	2 cut(s)	9, 117
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	447
BmtI	GCTAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	446
BsaJI	CCNNGG	2 cut(s)	156, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 480
Bse118I	RCCGGY	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	156, 384
BseGI	GGATG	2 cut(s)	247, 380
BseLI	CCNNNNNNNGG	2 cut(s)	385, 480
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	102
BshFI	GGCC	2 cut(s)	315, 389
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	385, 480
BsmAI	GTCTC	1 cut(s)	293
BsmBI	CGTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	315, 389
Bsp1286I	GDGCHC	2 cut(s)	337, 474
Bsp143I	GATC	2 cut(s)	151, 222
Bsp19I	CCATGG	1 cut(s)	384
BspANI	GGCC	2 cut(s)	315, 389
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	447
BspMI	ACCTGC	1 cut(s)	41
BspOI	GCTAGC	1 cut(s)	501
BspPI	GGATC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	2 cut(s)	156, 384
BssMI	GATC	2 cut(s)	151, 222
BssNI	GRCGYC	1 cut(s)	446
BssT1I	CCWWGG	2 cut(s)	156, 384
Bst4CI	ACNGT	2 cut(s)	76, 304
Bst6I	CTCTTC	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	182, 499
BstDEI	CTNAG	2 cut(s)	66, 84
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	247, 380
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	2 cut(s)	154, 225
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	151, 222
BstNSI	RCATGY	2 cut(s)	198, 458
BstV1I	GCAGC	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	315, 389
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	247, 380
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	3 cut(s)	81, 123, 258
BveI	ACCTGC	1 cut(s)	41
Cac8I	GCNNGC	2 cut(s)	182, 499
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	4 cut(s)	195, 206, 385, 455
CviJI	RGCY	6 cut(s)	65, 315, 323, 335, 389, 472
CviKI_1	RGCY	6 cut(s)	65, 315, 323, 335, 389, 472
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	2 cut(s)	66, 84
DinI	GGCGCC	1 cut(s)	447
DpnI	GATC	2 cut(s)	153, 224
DpnII	GATC	2 cut(s)	151, 222
DraIII	CACNNNGTG	1 cut(s)	406
EaeI	YGGCCR	2 cut(s)	313, 387
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	335
Eco130I	CCWWGG	2 cut(s)	156, 384
Eco24I	GRGCYC	2 cut(s)	337, 474
Eco47I	GGWCC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	156, 384
EcoT38I	GRGCYC	2 cut(s)	337, 474
EgeI	GGCGCC	1 cut(s)	447
EheI	GGCGCC	1 cut(s)	447
ErhI	CCWWGG	2 cut(s)	156, 384
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	4 cut(s)	198, 209, 388, 458
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	4 cut(s)	194, 205, 384, 454
Fnu4HI	GCNGC	2 cut(s)	8, 116
FokI	GGATG	2 cut(s)	254, 367
FriOI	GRGCYC	2 cut(s)	337, 474
Fsp4HI	GCNGC	2 cut(s)	8, 116
FspBI	CTAG	3 cut(s)	365, 450, 498
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	2 cut(s)	8, 116
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	2 cut(s)	315, 389
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	446
Hin1II	CATG	4 cut(s)	198, 209, 388, 458
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HpaI	GTTAAC	1 cut(s)	138
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	1 cut(s)	514
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	2 cut(s)	55, 173
HpyCH4III	ACNGT	2 cut(s)	76, 304
HpyCH4V	TGCA	3 cut(s)	215, 236, 400
HpyF3I	CTNAG	2 cut(s)	66, 84
Hsp92I	GRCGYC	1 cut(s)	446
Hsp92II	CATG	4 cut(s)	198, 209, 388, 458
HspAI	GCGC	1 cut(s)	446
KasI	GGCGCC	1 cut(s)	445
KroI	GCCGGC	1 cut(s)	180
KroNI	GCCGGC	1 cut(s)	182
KspAI	GTTAAC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	151, 222
LpnPI	CCDG	6 cut(s)	8, 36, 176, 194, 272, 487
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	3 cut(s)	365, 450, 498
MaeIII	GTNAC	2 cut(s)	121, 197
MalI	GATC	2 cut(s)	153, 224
MboI	GATC	2 cut(s)	151, 222
MboII	GAAGA	2 cut(s)	44, 496
MhlI	GDGCHC	2 cut(s)	337, 474
MlsI	TGGCCA	2 cut(s)	315, 389
MluCI	AATT	3 cut(s)	12, 250, 431
MluNI	TGGCCA	2 cut(s)	315, 389
Mly113I	GGCGCC	1 cut(s)	446
MnlI	CCTC	6 cut(s)	28, 30, 91, 151, 264, 520
Mox20I	TGGCCA	2 cut(s)	315, 389
MroNI	GCCGGC	1 cut(s)	180
MscI	TGGCCA	2 cut(s)	315, 389
MseI	TTAA	3 cut(s)	137, 329, 342
MslI	CAYNNNNRTG	2 cut(s)	204, 395
Msp20I	TGGCCA	2 cut(s)	315, 389
MspI	CCGG	1 cut(s)	181
NaeI	GCCGGC	1 cut(s)	182
NarI	GGCGCC	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	2 cut(s)	151, 222
NgoMIV	GCCGGC	1 cut(s)	180
NheI	GCTAGC	1 cut(s)	497
NlaIII	CATG	4 cut(s)	198, 209, 388, 458
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	121, 197
NspI	RCATGY	2 cut(s)	198, 458
PaqCI	CACCTGC	1 cut(s)	41
PciI	ACATGT	1 cut(s)	454
PdiI	GCCGGC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	9, 117
PluTI	GGCGCC	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	160
PscI	ACATGT	1 cut(s)	454
Psp124BI	GAGCTC	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	160
PspPPI	RGGWCCY	1 cut(s)	160
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	2 cut(s)	204, 395
SacI	GAGCTC	1 cut(s)	337
SaqAI	TTAA	3 cut(s)	137, 329, 342
SatI	GCNGC	2 cut(s)	8, 116
Sau3AI	GATC	2 cut(s)	151, 222
Sau96I	GGNCC	1 cut(s)	160
SduI	GDGCHC	2 cut(s)	337, 474
SetI	ASST	9 cut(s)	55, 102, 143, 165, 325, 337, 366, 493, 521
SfoI	GGCGCC	1 cut(s)	447
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	2 cut(s)	204, 395
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	3 cut(s)	12, 250, 431
SspDI	GGCGCC	1 cut(s)	445
SspMI	CTAG	3 cut(s)	365, 450, 498
SstI	GAGCTC	1 cut(s)	337
StyI	CCWWGG	2 cut(s)	156, 384
TaaI	ACNGT	2 cut(s)	76, 304
TasI	AATT	3 cut(s)	12, 250, 431
TatI	WGTACW	1 cut(s)	89
Tru1I	TTAA	3 cut(s)	137, 329, 342
Tru9I	TTAA	3 cut(s)	137, 329, 342
TscAI	CASTG	3 cut(s)	81, 130, 265
TseFI	GTSAC	2 cut(s)	121, 197
TseI	GCWGC	2 cut(s)	7, 115
Tsp45I	GTSAC	2 cut(s)	121, 197
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	3 cut(s)	81, 130, 265
VpaK11BI	GGWCC	1 cut(s)	160
XceI	RCATGY	2 cut(s)	198, 458
XspI	CTAG	3 cut(s)	365, 450, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.