Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004063

Physical Location & Seq

Genomic Coordinates Forward (+)

3489964 .. 3500765

Gene Structure 10802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06120.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5892 bp

ATGGCGCCGTCCGACGGCTTCAGCGTCCGGATCGTCTCCGTCGACTTCTACATGACGCCGCCCATCCCCGGCCTCGATATCTCCTACAGTAGCTTCCACGGTGGGAAGGTGAAAGAGGTGCCTGTAATAAGAATCTACGGCTCGACTCCGGCCGGTCAGAAAACTTGTTTGCATATTCACAGAGCATTGCCATACTTATATGTGCCGTGTGCCGATATGCCAATTCAACCAAATCAGACAGGTGATTCGTACACGTATGATATATCTCTTGCTTTAGAGAAGGCTTTGAAGCTCAAAAGCAGTGCTGGTTCAAAGCGACAACATGTACATGGTTGCAGCCTTGTCCAGGCAAGGAAGCTCTATGGTTACCATTCATCAGAGGAGGTTTTTGTGAAGATATACCTCTATTATCCACATGATGTGACTCGCGCAGCCAATCTTCTTCTGGGAGGTGCAGTTCTGGGTAAATGCTTACAGCCCCATCAATCGCACATTCCCTTCATTCTCCAATTTATGATTGATTACAACTTGTATGGGATGGGCCATCTGCATCTATCGAAACTGAAGTTCCGCCATCCAATGCCAGATGTTTTTACCCCAAGGAGATCTGTTTACAATGGACAGTCTAAACAGGTCATAGATAATTTAATTGGCACGTCTACAGATGTCCAGGCAGATATAAGTGATCATCTGCCTTTAGATTCACAAGTTTGGATATCGTCCACAATTCCAGCAGACTGGATATGGCTTTCTCCCGGTGATGTTGCGGCTTCATTGAATGCAGATGCTATCTCCACTAAACGACAAAGTATTTGTGAACTTGAGGGGGATGCTACGACAGATGAGATTCTCAATCAGCAGTTCAAAATGTATACATCCCTCTCGCAAACTCGATCTGATGTGAAAATGGTTCAATCTCTTATACCAATTTGGGAGGAGTTTGAAAGGAGTGGGATACATGAAGCAGCAATATCTTCTAATGCTGCTAAACCACTTCCCGAAGATGTTTTGAGAACTCTATCACTTGGTCCAGAATTTAATGAGAAACTTGTCAAATTGCATTTTGATACTGAAAGCTATCTGCCTTTAACTCAATTGAAGAAAGATGTAAAGTCTACGCACCAAATAACCTCTCCAAAAGATGGAGGAAATTCTGTTGGACATAGTACTGATAATCTTATTTCTGGAGAGATGATGGGATCTCTATCAAGACGAGGTTCTACAGAAGAGACGGATGCAAAACTGAATAATGAACTGCCAGTATCTCAAGTGATTCAGACATTAAGCATGAAGGCTGCAGATAATGAAGCACTAGCACTGCTTAGATGGCTTGCCACTTCTCAGGCAGCTGATGATTTGAATTCCGATGATGAACTTGTTCGGGAGACAATACTGAGTCCTTTGTTGCCTGCAACAACTATTGACAAAGTTCTGGAGAAAGCTAATATGGATTATGAGAATGAATCTCAAAAGGAATGTCAGGACATCCTTGATTCAGTTGGTGACTTTGAGGGATCAAAGGAAAAAGTTTCTTCTCCTGCTGACCAAAACTTTTCTTCTAAAAGTGAACCTGCATGTATGATTCCGCAGGTGGATCATATTGGGGATGATGTTCTCTCAACTCCATCTCCTTGTGCTGGATCAATCAAAAAAGTTTCTGAAGTAGAGATGAAGGATGAACTTAGGACGCCCGAACACCAGGTTTTAAAACATGGCTTAAGCTCCAATCATAAACTCAAAAGGAAAAAATTACTATGGGGCTCTTTATCTCTGTCTGCTGCCCAAAAGCTGAAGACTGAGAGGGAACCCGTCAGTTTGTACAAAGAAAGTAAGAATTCTGTTGGTACAAGTTCCTCCTCTGAAAGTGAAGTGAGAAAACATGCAGGCACTGATGCTTGTGATAGTACGGTGGAAACATGCTCCGTGCGGGACTTGATGAGGAAAAAGCGATCATATCGAATTGAGCCACCTGCAAAAGAAGATTCACTTCATCAAATGTTGCATGTTGATGAACTTAATGGGAAGTCTTGTGAGTCTTTAGCTGACAGGCTATCCCTAGATCACCAACACTCAGTAAGTCATGAGGCTAATGATGTTAAAACAACCAATTCTGGCGGTCCCTTGTATGGTAAACTTCCACTTTTGCTTGGCAGTGTCAACTCTTTAAATGCAAGTATGTTAGATGGAAAGTTTGACACGGAGGTTGGCAGTGGAGCAATTGCTAAACTTGGAAACATCGTAATGACATGCTCTTCTGAAGCTCCTCCTGTGAATACAGGATTATGGCAATTAAAGCCTGACAAGCTCAAGTCTGAACCTTCCCTTGGCCATTGTGAAACTTTAAAAAAATCTAATGCTCAGATTTCCAAGTCAGGTGCTGAGGAAAACAAGTCAGGTACTGAGGGAAACATTTTTGTTGATGAGAGTTTTCATAGCACTGCTGCTGACCCTGAAGTTTCTGGTGGAGATGGTCACACTGGAAAGGGCATTGATGCCTCATCTTCTGGGAATGGAGTATCTGCGATACCTTTTGATATACCTCTGGGCACAAATGTCACATCTGACGCAACTGCTTTAGTCAATGAGAGGTGTGGTAGCAAGAAACTGAGGAGGGATTCTTTTTCATCTGGGTTTAGTAACTTGTTGCCCTCGGTCATCCAATCTGATGATAAGGGCTTAATTGGCATGACTTTCTCTTCGAAACCCCCGATTGCAGACTGGAAGGATGGGGGATTTTTGGCTTCTTCATATTTACAAGAGGGAGGTTTGGATGATATTCTTCCATTCTTTATGAGAGACTGCCAAGATGAGACAGAGATCCAGCACAACCGTGTTGGAATTAGTGAGTCTCATTCTCATCAAGAAAGTGCCAGAGGTGTCCCTACTCACTATCAAGCTGATGGCTTTTGTTTGTATCTGTTAACACCTGCAATTTCACCTCCTACTGCCAAAAATGTACACTGCTGGATCCATCATGCAGGATCTTCTGCGATTCTGACTGGTTTACAGAAGTCTTTGCCTAATGATTTGGACAAGCCTTCACTCAAATATGGTTCTGTATGTGATGTTCAACCTAATCTATGCCAAGGACCACAAGTAGATCATAGAAATCTTGAAGCAGAAAGGTATCCTTTTTGTAATGACATGACAGAAGCATTGGAACGAGAAGCAGATGTTATAAGAGTTAAGACATACCCTGATCGCTTGCAAGATAGTTCTCAGATCTCTGGTCCAGATAGGAGATCGAAATCCACTCCACTTAGTCAAACTGGGTTTCGAGACCCAGCAAGTGTTGGTATTGGCCAGCAGCTGATGTTGTTAAGTATAGAGGTTCAAGCAGAATCTAGGGGTGATCTTCGACCCAATCCTCAGTTTGATGCTATCAATATTGTATCGCTTGCTATTCAGAATGATTGTGATTCCATTGTTGAAGTTCACGTACTTATGCGCAGCAATGCCAAAAATTGTAAGAGGAGTCATGACGGAATTTCTGACTGCAAGCTGCTGGTGTTTCATGAAGAGAAGTACTTATTTCATCATTTTATCAAGTTTGTATGCTCCTTGGACCCCGATATATTGATGGGTTGGGACATTCAGGGTGGTTCTCTTGGTTTTTTGGCTGAAAGGGCTTCACATCTTGGTATAGGCTTACTCAACAAGATATCTCGAACACCATCTGAAGCCCAGATGGTGGCTGAGGATTCCGAAGTTCCGGAGAAAGTCTCACAAGATAACCTAGTTGCTGAATCGATTACTGATTCGGTTGTATTAGAAGATCCAATAATTGAGGATGAATGGGGACGAACTCATTCCAGCGGTGTCCATGTTGGTGGTAGAATTGTACTTAATGTCTGGCGGCTGATGCGCAGTGAAGTGAAGCTTAATATGAACACAGTCGAAGCTGTTTCTGAAGTTGTGTTGAGGCGGAAAGTCCCATATATTCCTAATAAAGTACTGACAAAATGGTTTTTAAGTGGTCCTGGAAGAGCAAGATACCGATGTATCAAATATGTGAAGGAGAGAGCAGAACTGAATCTTGAGATGATGAATCAACTAGATATGATAAATCGAACATCAGAACTTGCCCGTGTCTTTGGCATCGACTTTTTTTCTGTTCTCTCTAGAGGCTCCCAATACCGTGTTGAATCTATGGTTCTGAGACTGGCACATATACAAAACTATCTTGCCATTTCCCCTGGGAAACAACAGGTAGCATCGCAGCCAGCAATGGAATGCATCCCTCTTGTAATGGAACCAGAATCTGGTTTTTATGCAGATCCAGTAGTTGTTTTGGATTTTCAATCTCTTTATCCATCGATGATAATTGCATACAACCTTTGCTATTCTACATGCCTTGGAAAAGTTGCACCTTCAGAATCAAATACACTTGGTGTCAGTTCATTTTCACCAGATCCACATGATCTGCATGATTTAAAAGATCAAATACTTCTTACTCCAAATGGTGTTATGTACGTGCCAGCAAAGGTCCGTAAAGGTGTACTACCCCGCTTATTGGATGAAATATTGTCAACCAGAATAATGGTTAAACAAGCAATGAAAAAATTGTCTCCATCACAGAAAGTTCTTCACAGGATATTTAATGCAAGACAATTTGCACTGAAGCTGATAGCAAACGTGACGTATGGTTACACTGCTGCTGGGTTTAGTGGCCGCATGCCTTGTGCAGAGATTGCAGACAGTATTGTCCAGTGCGGCCGTAGCACACTTGAGAAGGCTATTTCATATGTAAATGCACATGACAAGTGGAAGGCTAAAGTTATTTATGGCGACACAGACAGCATGTTTGTCCTTCTAAAAGGCCGCACTAGGGAAGAATCTTTTCAGATTGGACAGGAGATTGCCTCTGAAATCAGTTCTATGAGCCCAACTCCAGTTGCTTTGAAGATGGAAAAAGTTTATCAGCCATGTTTCCTTCTTACCAAGAAGCGATATGTTGGTTACAGCTATGAAAGCCCTGGACAGAGTGAACCTATTTTTGATGCTAAAGGCATTGAGACAGTTCGCAGGGATACATGTGCGGCTGTTGCCAAGACAATGGAGCAGTCTCTGAGACTTTTTTTTGAACATCAAGATATGGCTGAGGTCAAAGCATACTTACAGCGCCAGTGGAAACGAATTCTTTCTGGAAGGGTGTGTCTTCAGGATTTTGTATTTGCAAAAGAGGTTCGTCTAGGAACTTACCGTGCTAGTGGTTCATCACTTCCACCAGCTGCAATTGTTGCTACAAAAGCTATGAGAATTGACCCGAGGGCAGAACCACGTTATGCAGAGAGAGTACCTTACGTTGTAATACATGGGGAGCCTGGGGCCCGTCTGGCTGATGTGGTTGTGGATCCCTTGAGCCTACTGGCCACTGATTCAGCCTATAGACTAAATGATCTCTATTACATTCACAAACAGATAATCCCAGCTTTGCAGCGAGTGTTTGGGCTTGTTGGAGCTGACCTGCCGCAGTGGTTTTCAGATATGCCCCGCCCAGTAAGGGAAGCCTTGGGGAAACGCCCCTCTTCTGCTTCAAATGCACACCGAACCAGAATTGACTATTACTATCTTTCAAGGCATTGCATATTGTGTGGTGAGTTGGTCCAGGGATCGGCCCATCTATGCAATCAATGTTCTGAGAACAAAACTGCAGCAGCAGCAGCTATAATTGGAAGGACTTCAAAGCTGGAGAAAGAGATGCAACACCTTGCCGCTATCTGTCGACATTGTGGAGGTGGGGATTCACTTGAAGGAAATGGCATCAAATGCACTTCTCTTGCATGCTCAGTGTTTTATGAGAGACGCAAAGTTCAGAAAGAACTGCAGGGAACTGCTTCTGTTGCTGCAGAAACAGGTTTCTATCCTCAATGTTTGGTCGAGTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

1964

Amino Acids

216.64

Weight (kDa)

6.25

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REV3_N	PF24065	7 - 60	8.6e-18	DNA polymerase zeta catalytic subunit, N-terminal
POL3_N	PF24055	62 - 141	5.3e-22	DNA polymerase delta catalytic subunit-like, N-terminal domain
DNA_pol_B_exo1	PF03104	1104 - 1226	2.4e-09	DNA polymerase family B, exonuclease domain
DNA_pol_B	PF00136	1370 - 1817	3.2e-99	DNA polymerase family B
zf-C4pol	PF14260	1863 - 1936	2e-14	C4-type zinc-finger of DNA polymerase delta

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500
fragaria_vesca	FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120
malus_domestica	MD05G1053400.v1.1 MD05G1053600.v1.1 MD05G1053700.v1.1 MD12G1217900.v1.1
prunus_persica	Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1
pyrus_communis	pycom05g04420 pycom12g20340
rosa_chinensis	RchiOBHm_Chr3g0455131
rosa_laevigata	RLG00000025385
rosa_multiflora	Rmu_co8200746.1_g000001 Rmu_sc0041669.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424540
rosa_rugosa	Rorug01G0381700 Rorug03G0004000
rosa_samantha	Rh3AG064900 Rh3BG066900 Rh3CG065300 Rh3DG066800
rosa_wichuraiana	Rw3G005080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3179
AarI	CACCTGC	3 cut(s)	1579, 1978, 2935
AasI	GACNNNNNNGTC	1 cut(s)	4703
Acc16I	TGCGCA	2 cut(s)	3449, 3866
Acc36I	ACCTGC	5 cut(s)	1579, 1579, 1978, 2935, 5475
AccB1I	GGYRCC	2 cut(s)	4, 118
AccB7I	CCANNNNNTGG	3 cut(s)	1142, 3691, 4262
AccI	GTMKAC	5 cut(s)	42, 659, 872, 1115, 5725
AccII	CGCG	1 cut(s)	429
AccIII	TCCGGA	2 cut(s)	27, 3712
AcoI	YGGCCR	6 cut(s)	150, 2326, 3301, 4669, 4714, 5370
AcsI	RAATTY	6 cut(s)	1034, 1150, 1360, 1834, 3486, 5136
AcyI	GRCGYC	3 cut(s)	5, 56, 1688
AdeI	CACNNNGTG	1 cut(s)	4391
AflII	CTTAAG	1 cut(s)	1717
AflIII	ACRYGT	3 cut(s)	252, 322, 5033
AjiI	CACGTC	1 cut(s)	657
AjnI	CCWGG	8 cut(s)	345, 669, 1698, 3979, 4195, 4975, 5323, 5607
AjuI	GAANNNNNNNTTGG	2 cut(s)	2307, 2339
AleI	CACNNNNGTG	1 cut(s)	2829
AloI	GAACNNNNNNTCC	2 cut(s)	441, 473
AlwNI	CAGNNNCTG	6 cut(s)	1889, 2378, 2399, 3310, 4262, 5068
Ama87I	CYCGRG	1 cut(s)	5266
Aor13HI	TCCGGA	2 cut(s)	27, 3712
ApaI	GGGCCC	1 cut(s)	5332
ApoI	RAATTY	6 cut(s)	1034, 1150, 1360, 1834, 3486, 5136
Asp700I	GAANNNNTTC	6 cut(s)	1377, 3808, 4839, 5140, 5680, 5836
AspLEI	GCGC	5 cut(s)	7, 431, 3450, 3867, 5124
AsuC2I	CCSGG	2 cut(s)	69, 756
AsuHPI	GGTGA	9 cut(s)	121, 254, 770, 1514, 2054, 2928, 3362, 4398, 5609
AsuII	TTCGAA	1 cut(s)	2699
AvaI	CYCGRG	1 cut(s)	5266
AvaII	GGWCC	8 cut(s)	1028, 2117, 3089, 3230, 3565, 3977, 4486, 5605
BaeGI	GKGCMC	2 cut(s)	2549, 5332
BaeI	ACNNNNGTAYC	4 cut(s)	3985, 3985, 4018, 4018
BalI	TGGCCA	3 cut(s)	2328, 3303, 5372
BamHI	GGATCC	2 cut(s)	2967, 5353
BanI	GGYRCC	2 cut(s)	4, 118
BanII	GRGCYC	3 cut(s)	1763, 4886, 5332
BarI	GAAGNNNNNNTAC	2 cut(s)	3423, 3455
BbsI	GAAGAC	2 cut(s)	1799, 5150
BbvCI	CCTCAGC	3 cut(s)	2379, 3696, 5100
BceAI	ACGGC	4 cut(s)	31, 154, 190, 4701
BciT130I	CCWGG	8 cut(s)	347, 671, 1700, 3981, 4197, 4977, 5325, 5609
BciVI	GTATCC	3 cut(s)	948, 3138, 5023
BclI	TGATCA	1 cut(s)	685
BcnI	CCSGG	2 cut(s)	69, 756
BfaI	CTAG	9 cut(s)	1313, 2057, 3345, 3737, 4055, 4122, 4827, 5192, 5208
BfmI	CTRYAG	8 cut(s)	85, 660, 1221, 1296, 5386, 5652, 5825, 5847
BfoI	RGCGCY	2 cut(s)	8, 5125
BfrI	CTTAAG	1 cut(s)	1717
BfuAI	ACCTGC	5 cut(s)	1579, 1579, 1978, 2935, 5475
BfuI	GTATCC	3 cut(s)	948, 3138, 5023
BglI	GCCNNNNNGGC	1 cut(s)	5336
BglII	AGATCT	2 cut(s)	605, 3222
BmcAI	AGTACT	3 cut(s)	1168, 3527, 3954
Bme18I	GGWCC	8 cut(s)	1028, 2117, 3089, 3230, 3565, 3977, 4486, 5605
BmeT110I	CYCGRG	1 cut(s)	5266
BmgBI	CACGTC	1 cut(s)	657
BmrI	ACTGGG	2 cut(s)	3279, 5492
BmuI	ACTGGG	2 cut(s)	3279, 5492
BpiI	GAAGAC	2 cut(s)	1799, 5150
BplI	GAGNNNNNCTC	6 cut(s)	3707, 3739, 4847, 4879, 4873, 4905
BpmI	CTGGAG	4 cut(s)	1206, 1454, 4875, 5711
Bpu10I	CCTNAGC	3 cut(s)	2379, 3696, 5100
Bpu14I	TTCGAA	1 cut(s)	2699
BpuEI	CTTGAG	6 cut(s)	842, 1251, 2291, 4058, 4748, 5380
BpuMI	CCSGG	2 cut(s)	69, 756
Bsa29I	ATCGAT	2 cut(s)	3749, 4316
BsaAI	YACGTR	3 cut(s)	255, 3439, 4474
BsaBI	GATNNNNATC	2 cut(s)	1204, 3247
BsaHI	GRCGYC	3 cut(s)	5, 56, 1688
BsaI	GGTCTC	1 cut(s)	3273
BsaWI	WCCGGW	2 cut(s)	27, 3712
BsaXI	ACNNNNNCTCC	4 cut(s)	441, 471, 1612, 1642
Bse118I	RCCGGY	1 cut(s)	152
Bse3DI	GCAATG	5 cut(s)	185, 3460, 4233, 4560, 5581
Bse8I	GATNNNNATC	2 cut(s)	1204, 3247
BseAI	TCCGGA	2 cut(s)	27, 3712
BseBI	CCWGG	8 cut(s)	347, 671, 1700, 3981, 4197, 4977, 5325, 5609
BseCI	ATCGAT	2 cut(s)	3749, 4316
BseJI	GATNNNNATC	2 cut(s)	1204, 3247
BseMI	GCAATG	5 cut(s)	185, 3460, 4233, 4560, 5581
BseRI	GAGGAG	6 cut(s)	395, 950, 1846, 2253, 2623, 3487
BseSI	GKGCMC	2 cut(s)	2549, 5332
BseX3I	CGGCCG	2 cut(s)	150, 4714
BseYI	CCCAGC	3 cut(s)	3283, 4658, 5428
BsgI	GTGCAG	2 cut(s)	474, 4704
Bsh1236I	CGCG	1 cut(s)	429
Bsh1285I	CGRYCG	2 cut(s)	153, 4717
BshNI	GGYRCC	2 cut(s)	4, 118
BshVI	ATCGAT	2 cut(s)	3749, 4316
BsiEI	CGRYCG	2 cut(s)	153, 4717
BsiHKCI	CYCGRG	1 cut(s)	5266
BsiSI	CCGG	6 cut(s)	28, 69, 149, 153, 756, 3713
BslFI	GGGAC	6 cut(s)	1943, 2103, 2864, 3602, 3813, 3917
BsmBI	CGTCTC	3 cut(s)	40, 1223, 5797
BsmFI	GGGAC	6 cut(s)	1943, 2103, 2864, 3602, 3813, 3917
BsmI	GAATGC	2 cut(s)	784, 4238
Bso31I	GGTCTC	1 cut(s)	3273
BsoBI	CYCGRG	1 cut(s)	5266
Bsp119I	TTCGAA	1 cut(s)	2699
Bsp120I	GGGCCC	1 cut(s)	5328
Bsp1286I	GDGCHC	4 cut(s)	1763, 2549, 4886, 5332
Bsp13I	TCCGGA	2 cut(s)	27, 3712
Bsp1407I	TGTACA	3 cut(s)	325, 1818, 2956
BspDI	ATCGAT	2 cut(s)	3749, 4316
BspEI	TCCGGA	2 cut(s)	27, 3712
BspFNI	CGCG	1 cut(s)	429
BspHI	TCATGA	3 cut(s)	2080, 3478, 3514
BspMAI	CTGCAG	4 cut(s)	1300, 5656, 5829, 5851
BspMI	ACCTGC	5 cut(s)	1579, 1579, 1978, 2935, 5475
BspQI	GCTCTTC	2 cut(s)	2257, 3979
BspT104I	TTCGAA	1 cut(s)	2699
BspT107I	GGYRCC	2 cut(s)	4, 118
BspTI	CTTAAG	1 cut(s)	1717
BspTNI	GGTCTC	1 cut(s)	3273
BsrDI	GCAATG	5 cut(s)	185, 3460, 4233, 4560, 5581
BsrFI	RCCGGY	1 cut(s)	152
BsrGI	TGTACA	3 cut(s)	325, 1818, 2956
BssAI	RCCGGY	1 cut(s)	152
BssNAI	GTATAC	1 cut(s)	873
BssNI	GRCGYC	3 cut(s)	5, 56, 1688
BssT1I	CCWWGG	6 cut(s)	599, 2323, 3085, 3561, 4354, 5511
Bst1107I	GTATAC	1 cut(s)	873
Bst2UI	CCWGG	8 cut(s)	347, 671, 1700, 3981, 4197, 4977, 5325, 5609
Bst6I	CTCTTC	6 cut(s)	1221, 2257, 2701, 3513, 3979, 5533
BstACI	GRCGYC	3 cut(s)	5, 56, 1688
BstAFI	CTTAAG	1 cut(s)	1717
BstAPI	GCANNNNNTGC	3 cut(s)	4691, 5240, 5769
BstAUI	TGTACA	3 cut(s)	325, 1818, 2956
BstBAI	YACGTR	3 cut(s)	255, 3439, 4474
BstBI	TTCGAA	1 cut(s)	2699
BstDSI	CCRYGG	1 cut(s)	97
BstEII	GGTNACC	1 cut(s)	365
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstFNI	CGCG	1 cut(s)	429
BstH2I	RGCGCY	2 cut(s)	8, 5125
BstHHI	GCGC	5 cut(s)	7, 431, 3450, 3867, 5124
BstMCI	CGRYCG	2 cut(s)	153, 4717
BstNI	CCWGG	8 cut(s)	347, 671, 1700, 3981, 4197, 4977, 5325, 5609
BstPI	GGTNACC	1 cut(s)	365
BstSFI	CTRYAG	8 cut(s)	85, 660, 1221, 1296, 5386, 5652, 5825, 5847
BstSLI	GKGCMC	2 cut(s)	2549, 5332
BstUI	CGCG	1 cut(s)	429
BstV2I	GAAGAC	2 cut(s)	1799, 5150
BstXI	CCANNNNNNTGG	4 cut(s)	738, 3830, 4540, 5056
BstZ17I	GTATAC	1 cut(s)	873
BstZI	CGGCCG	2 cut(s)	150, 4714
Bsu15I	ATCGAT	2 cut(s)	3749, 4316
BsuI	GTATCC	3 cut(s)	948, 3138, 5023
BsuTUI	ATCGAT	2 cut(s)	3749, 4316
BtgI	CCRYGG	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	4200
BtrI	CACGTC	1 cut(s)	657
BtsI	GCAGTG	9 cut(s)	307, 1316, 2158, 2215, 2436, 2959, 3874, 4650, 5480
BveI	ACCTGC	5 cut(s)	1579, 1579, 1978, 2935, 5475
CaiI	CAGNNNCTG	6 cut(s)	1889, 2378, 2399, 3310, 4262, 5068
CciI	TCATGA	3 cut(s)	2080, 3478, 3514
CfoI	GCGC	5 cut(s)	7, 431, 3450, 3867, 5124
Cfr10I	RCCGGY	1 cut(s)	152
ClaI	ATCGAT	2 cut(s)	3749, 4316
CseI	GACGC	5 cut(s)	13, 64, 1696, 2573, 5814
CsiI	ACCWGGT	1 cut(s)	1698
DinI	GGCGCC	1 cut(s)	6
DraI	TTTAAA	4 cut(s)	1707, 2166, 2343, 4434
DraIII	CACNNNGTG	1 cut(s)	4391
DrdI	GACNNNNNNGTC	1 cut(s)	4703
DseDI	GACNNNNNNGTC	1 cut(s)	4703
EaeI	YGGCCR	6 cut(s)	150, 2326, 3301, 4669, 4714, 5370
EagI	CGGCCG	2 cut(s)	150, 4714
Eam1104I	CTCTTC	6 cut(s)	1221, 2257, 2701, 3513, 3979, 5533
EarI	CTCTTC	6 cut(s)	1221, 2257, 2701, 3513, 3979, 5533
EciI	GGCGGA	2 cut(s)	560, 3940
EclXI	CGGCCG	2 cut(s)	150, 4714
Eco130I	CCWWGG	6 cut(s)	599, 2323, 3085, 3561, 4354, 5511
Eco24I	GRGCYC	3 cut(s)	1763, 4886, 5332
Eco31I	GGTCTC	1 cut(s)	3273
Eco32I	GATATC	3 cut(s)	79, 717, 3663
Eco47I	GGWCC	8 cut(s)	1028, 2117, 3089, 3230, 3565, 3977, 4486, 5605
Eco52I	CGGCCG	2 cut(s)	150, 4714
Eco88I	CYCGRG	1 cut(s)	5266
Eco91I	GGTNACC	1 cut(s)	365
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	5328
EcoO65I	GGTNACC	1 cut(s)	365
EcoRI	GAATTC	3 cut(s)	1360, 1834, 5136
EcoRII	CCWGG	8 cut(s)	345, 669, 1698, 3979, 4195, 4975, 5323, 5607
EcoRV	GATATC	3 cut(s)	79, 717, 3663
EcoT14I	CCWWGG	6 cut(s)	599, 2323, 3085, 3561, 4354, 5511
EcoT22I	ATGCAT	1 cut(s)	4238
EcoT38I	GRGCYC	3 cut(s)	1763, 4886, 5332
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	6 cut(s)	599, 2323, 3085, 3561, 4354, 5511
Esp3I	CGTCTC	3 cut(s)	40, 1223, 5797
FalI	AAGNNNNNCTT	6 cut(s)	1971, 2003, 3115, 3147, 3864, 3896
FaqI	GGGAC	6 cut(s)	1943, 2103, 2864, 3602, 3813, 3917
FauI	CCCGC	3 cut(s)	1920, 4514, 5501
FauNDI	CATATG	1 cut(s)	4744
FbaI	TGATCA	1 cut(s)	685
FblI	GTMKAC	5 cut(s)	42, 659, 872, 1115, 5725
FriOI	GRGCYC	3 cut(s)	1763, 4886, 5332
FspBI	CTAG	9 cut(s)	1313, 2057, 3345, 3737, 4055, 4122, 4827, 5192, 5208
FspI	TGCGCA	2 cut(s)	3449, 3866
GlaI	GCGC	5 cut(s)	6, 430, 3449, 3866, 5123
GsaI	CCCAGC	3 cut(s)	3287, 4662, 5432
GsuI	CTGGAG	4 cut(s)	1206, 1454, 4875, 5711
HaeII	RGCGCY	2 cut(s)	8, 5125
HapII	CCGG	6 cut(s)	28, 69, 149, 153, 756, 3713
HgaI	GACGC	5 cut(s)	13, 64, 1696, 2573, 5814
HhaI	GCGC	5 cut(s)	7, 431, 3450, 3867, 5124
Hin1I	GRCGYC	3 cut(s)	5, 56, 1688
Hin6I	GCGC	5 cut(s)	5, 429, 3448, 3865, 5122
HinP1I	GCGC	5 cut(s)	5, 429, 3448, 3865, 5122
HincII	GTYRAC	5 cut(s)	43, 2158, 2922, 4530, 5726
HindII	GTYRAC	5 cut(s)	43, 2158, 2922, 4530, 5726
HindIII	AAGCTT	1 cut(s)	3878
HpaI	GTTAAC	1 cut(s)	2922
HpaII	CCGG	6 cut(s)	28, 69, 149, 153, 756, 3713
HphI	GGTGA	9 cut(s)	121, 254, 770, 1514, 2054, 2928, 3362, 4398, 5609
Hpy99I	CGWCG	2 cut(s)	17, 44
HpyCH4IV	ACGT	8 cut(s)	254, 656, 3438, 4473, 4635, 4640, 5281, 5304
HpySE526I	ACGT	8 cut(s)	254, 656, 3438, 4473, 4635, 4640, 5281, 5304
Hsp92I	GRCGYC	3 cut(s)	5, 56, 1688
HspAI	GCGC	5 cut(s)	5, 429, 3448, 3865, 5122
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	2 cut(s)	27, 3712
Ksp22I	TGATCA	1 cut(s)	685
KspAI	GTTAAC	1 cut(s)	2922
LguI	GCTCTTC	2 cut(s)	2257, 3979
LmnI	GCTCC	9 cut(s)	1727, 1925, 2213, 2266, 3563, 4133, 5059, 5320, 5459
MabI	ACCWGGT	1 cut(s)	1698
MaeI	CTAG	9 cut(s)	1313, 2057, 3345, 3737, 4055, 4122, 4827, 5192, 5208
MaeII	ACGT	8 cut(s)	254, 656, 3438, 4473, 4635, 4640, 5281, 5304
MaeIII	GTNAC	9 cut(s)	365, 421, 1502, 2471, 2554, 2636, 4636, 4646, 4958
MfeI	CAATTG	3 cut(s)	1094, 2217, 5235
MhlI	GDGCHC	4 cut(s)	1763, 2549, 4886, 5332
MlsI	TGGCCA	3 cut(s)	2328, 3303, 5372
MluNI	TGGCCA	3 cut(s)	2328, 3303, 5372
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	6 cut(s)	139, 418, 1405, 2042, 2855, 3484
MmeI	TCCRAC	4 cut(s)	36, 1138, 2815, 5437
Mox20I	TGGCCA	3 cut(s)	2328, 3303, 5372
Mph1103I	ATGCAT	1 cut(s)	4238
MroI	TCCGGA	2 cut(s)	27, 3712
MroXI	GAANNNNTTC	6 cut(s)	1377, 3808, 4839, 5140, 5680, 5836
MscI	TGGCCA	3 cut(s)	2328, 3303, 5372
MslI	CAYNNNNRTG	5 cut(s)	327, 2007, 2240, 2829, 3828
Msp20I	TGGCCA	3 cut(s)	2328, 3303, 5372
MspA1I	CMGCKG	4 cut(s)	1349, 3310, 3816, 5231
MspCI	CTTAAG	1 cut(s)	1717
MspI	CCGG	6 cut(s)	28, 69, 149, 153, 756, 3713
MunI	CAATTG	3 cut(s)	1094, 2217, 5235
Mva1269I	GAATGC	2 cut(s)	784, 4238
MvaI	CCWGG	8 cut(s)	347, 671, 1700, 3981, 4197, 4977, 5325, 5609
MvnI	CGCG	1 cut(s)	429
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	69, 756
NdeI	CATATG	1 cut(s)	4744
NmuCI	GTSAC	5 cut(s)	421, 1502, 2471, 2554, 4636
NsbI	TGCGCA	2 cut(s)	3449, 3866
NsiI	ATGCAT	1 cut(s)	4238
NspV	TTCGAA	1 cut(s)	2699
OliI	CACNNNNGTG	1 cut(s)	2829
PaeI	GCATGC	2 cut(s)	4678, 5787
PagI	TCATGA	3 cut(s)	2080, 3478, 3514
PaqCI	CACCTGC	3 cut(s)	1579, 1978, 2935
PasI	CCCWGGG	1 cut(s)	4196
PciI	ACATGT	2 cut(s)	322, 5033
PciSI	GCTCTTC	2 cut(s)	2257, 3979
PcsI	WCGNNNNNNNCGW	3 cut(s)	21, 39, 2705
PctI	GAATGC	2 cut(s)	784, 4238
PdmI	GAANNNNTTC	6 cut(s)	1377, 3808, 4839, 5140, 5680, 5836
PflMI	CCANNNNNTGG	3 cut(s)	1142, 3691, 4262
PfoI	TCCNGGA	1 cut(s)	3979
PleI	GAGTC	6 cut(s)	139, 418, 1404, 2041, 2854, 3483
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	6 cut(s)	139, 418, 1404, 2041, 2854, 3483
Ppu21I	YACGTR	3 cut(s)	255, 3439, 4474
PscI	ACATGT	2 cut(s)	322, 5033
PsiI	TTATAA	1 cut(s)	3179
Psp6I	CCWGG	8 cut(s)	345, 669, 1698, 3979, 4195, 4975, 5323, 5607
PspEI	GGTNACC	1 cut(s)	365
PspFI	CCCAGC	3 cut(s)	3283, 4658, 5428
PspGI	CCWGG	8 cut(s)	345, 669, 1698, 3979, 4195, 4975, 5323, 5607
PspOMI	GGGCCC	1 cut(s)	5328
PsrI	GAACNNNNNNTAC	2 cut(s)	3051, 3083
PstI	CTGCAG	4 cut(s)	1300, 5656, 5829, 5851
PstNI	CAGNNNCTG	6 cut(s)	1889, 2378, 2399, 3310, 4262, 5068
PvuII	CAGCTG	3 cut(s)	1349, 3310, 5231
RseI	CAYNNNNRTG	5 cut(s)	327, 2007, 2240, 2829, 3828
SalI	GTCGAC	2 cut(s)	41, 5724
SapI	GCTCTTC	2 cut(s)	2257, 3979
ScaI	AGTACT	3 cut(s)	1168, 3527, 3954
SchI	GAGTC	6 cut(s)	139, 418, 1405, 2042, 2855, 3484
SduI	GDGCHC	4 cut(s)	1763, 2549, 4886, 5332
SexAI	ACCWGGT	1 cut(s)	1698
SfcI	CTRYAG	8 cut(s)	85, 660, 1221, 1296, 5386, 5652, 5825, 5847
SfoI	GGCGCC	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	2699
SinI	GGWCC	8 cut(s)	1028, 2117, 3089, 3230, 3565, 3977, 4486, 5605
SmiMI	CAYNNNNRTG	5 cut(s)	327, 2007, 2240, 2829, 3828
SmlI	CTYRAG	7 cut(s)	821, 1266, 1717, 2306, 4037, 4727, 5359
SmoI	CTYRAG	7 cut(s)	821, 1266, 1717, 2306, 4037, 4727, 5359
SphI	GCATGC	2 cut(s)	4678, 5787
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	2 cut(s)	3388, 4524
SspMI	CTAG	9 cut(s)	1313, 2057, 3345, 3737, 4055, 4122, 4827, 5192, 5208
StyI	CCWWGG	6 cut(s)	599, 2323, 3085, 3561, 4354, 5511
TaiI	ACGT	8 cut(s)	257, 659, 3441, 4476, 4638, 4643, 5284, 5307
TaqII	GACCGA	1 cut(s)	2641
TatI	WGTACW	8 cut(s)	325, 1166, 1818, 2956, 3525, 3841, 3952, 4498
TauI	GCSGC	9 cut(s)	61, 770, 3859, 4674, 4716, 4824, 5042, 5473, 5717
TseFI	GTSAC	5 cut(s)	421, 1502, 2471, 2554, 4636
Tsp45I	GTSAC	5 cut(s)	421, 1502, 2471, 2554, 4636
TspGWI	ACGGA	6 cut(s)	28, 1247, 1912, 2213, 3498, 4478
Van91I	CCANNNNNTGG	3 cut(s)	1142, 3691, 4262
Vha464I	CTTAAG	1 cut(s)	1717
VpaK11BI	GGWCC	8 cut(s)	1028, 2117, 3089, 3230, 3565, 3977, 4486, 5605
XagI	CCTNNNNNAGG	1 cut(s)	344
XapI	RAATTY	6 cut(s)	1034, 1150, 1360, 1834, 3486, 5136
XbaI	TCTAGA	1 cut(s)	4121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmiI	GTMKAC	5 cut(s)	42, 659, 872, 1115, 5725
XmnI	GAANNNNTTC	6 cut(s)	1377, 3808, 4839, 5140, 5680, 5836
XspI	CTAG	9 cut(s)	1313, 2057, 3345, 3737, 4055, 4122, 4827, 5192, 5208
ZrmI	AGTACT	3 cut(s)	1168, 3527, 3954
Zsp2I	ATGCAT	1 cut(s)	4238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.