Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8200746.1

Orthogroup ID

OG0004063

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 711

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8200746.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

tttcaggctgcagataatgaagcactagctctgcttagatggcttgccacttctcaggcagctgatgatttgaactccgatgatgaacttgttcaggagacaatactgagtcctttgttgcctgcaacaactattgacaaagttctggagaaagctaatatggattatgagagtgaatcccaaaaggaatgtcaggacatccttgattcggttggcgactttgagggatcaaaggaaaaagattcttatcccactgatcggaactgttcttccaaaagtgaacctgcatgtatgattctccaggtgaatggtactggggatgatgttctctcaactccatctccttgtgccggatcaatcgaaaatatttctgaagtagagatgaagaatgaacttaggactcctgaaccccaggttacgaaagatggtctaagctccaatcataaacacaaaaggaaaaaattattatggggctctttacctttgtctgcggcccaaaagctgaagactgagagtgaacctgtcagtttgtacaaggaaactaaggatcccgttggtacaagtgcctcctctgaaagtgaagtgagaaaacatgcaggcactgatgcttgtgatagtacgttgggaagatgctctctgcgggacttgatgaggagaaagcgatcttatcgaattgagccacctgaaaaagaagatacactttatcaaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

237

Amino Acids

26.21

Weight (kDa)

4.8

Isoelectric Point (pI)

67.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500
fragaria_vesca	FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120
malus_domestica	MD05G1053400.v1.1 MD05G1053600.v1.1 MD05G1053700.v1.1 MD12G1217900.v1.1
prunus_persica	Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1
pyrus_communis	pycom05g04420 pycom12g20340
rosa_chinensis	RchiOBHm_Chr3g0455131
rosa_laevigata	RLG00000025385
rosa_multiflora	Rmu_co8200746.1_g000001 Rmu_sc0041669.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424540
rosa_rugosa	Rorug01G0381700 Rorug03G0004000
rosa_samantha	Rh3AG064900 Rh3BG066900 Rh3CG065300 Rh3DG066800
rosa_wichuraiana	Rw3G005080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AciI	CCGC	2 cut(s)	491, 640
AclWI	GGATC	4 cut(s)	235, 361, 542, 555
AcuI	CTGAAG	2 cut(s)	393, 524
AfaI	GTAC	4 cut(s)	313, 533, 559, 619
AfiI	CCNNNNNNNGG	3 cut(s)	208, 258, 350
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	300, 411
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	5 cut(s)	29, 62, 155, 435, 502
AluI	AGCT	5 cut(s)	29, 62, 155, 435, 502
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	4 cut(s)	235, 361, 542, 555
AlwNI	CAGNNNCTG	1 cut(s)	602
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	2 cut(s)	8, 59
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
Asp700I	GAANNNNTTC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	1 cut(s)	316
BamHI	GGATCC	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	512
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	3 cut(s)	33, 346, 419
BciT130I	CCWGG	2 cut(s)	302, 413
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	3 cut(s)	9, 60, 492
BlsI	GCNGC	3 cut(s)	10, 61, 493
Bme1390I	CCNGG	2 cut(s)	302, 413
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	302, 413
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	2 cut(s)	595, 620
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	512
BpmI	CTGGAG	2 cut(s)	167, 284
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 258, 350
Bse1I	ACTGG	1 cut(s)	319
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	302, 413
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	2 cut(s)	198, 325
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	3 cut(s)	208, 258, 350
BseMII	CTCAG	3 cut(s)	68, 98, 501
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	2 cut(s)	559, 667
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	3 cut(s)	208, 258, 350
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	656
BsnI	GGCC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	5 cut(s)	227, 256, 353, 547, 662
BspACI	CCGC	2 cut(s)	491, 640
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	3 cut(s)	67, 99, 502
BspLI	GGNNCC	1 cut(s)	549
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	4 cut(s)	235, 361, 542, 555
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	5 cut(s)	227, 256, 353, 547, 662
Bst2UI	CCWGG	2 cut(s)	302, 413
Bst4CI	ACNGT	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	531
BstC8I	GCNNGC	3 cut(s)	45, 123, 598
BstDEI	CTNAG	7 cut(s)	35, 54, 107, 395, 431, 510, 543
BstF5I	GGATG	2 cut(s)	198, 325
BstKTI	GATC	5 cut(s)	230, 259, 356, 550, 665
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	5 cut(s)	227, 256, 353, 547, 662
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	2 cut(s)	302, 413
BstNSI	RCATGY	2 cut(s)	291, 596
BstSCI	CCNGG	2 cut(s)	300, 411
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	1 cut(s)	494
BtsCI	GGATG	2 cut(s)	198, 325
BtsIMutI	CAGTG	2 cut(s)	252, 600
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	45, 123, 598
CaiI	CAGNNNCTG	1 cut(s)	602
Cfr13I	GGNCC	1 cut(s)	493
Csp6I	GTAC	4 cut(s)	312, 532, 558, 618
CviAII	CATG	2 cut(s)	288, 593
CviQI	GTAC	4 cut(s)	312, 532, 558, 618
DdeI	CTNAG	7 cut(s)	35, 54, 107, 395, 431, 510, 543
DpnI	GATC	5 cut(s)	229, 258, 355, 549, 664
DpnII	GATC	5 cut(s)	227, 256, 353, 547, 662
Eco24I	GRGCYC	1 cut(s)	476
Eco57I	CTGAAG	2 cut(s)	393, 524
EcoRII	CCWGG	2 cut(s)	300, 411
EcoT38I	GRGCYC	1 cut(s)	476
FaeI	CATG	2 cut(s)	291, 596
FaiI	YATR	7 cut(s)	161, 168, 289, 293, 444, 469, 594
FalI	AAGNNNNNCTT	1 cut(s)	684
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	2 cut(s)	287, 592
FauI	CCCGC	1 cut(s)	633
Fnu4HI	GCNGC	3 cut(s)	9, 60, 492
FokI	GGATG	2 cut(s)	185, 332
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	3 cut(s)	9, 60, 492
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	3 cut(s)	9, 60, 492
GsuI	CTGGAG	2 cut(s)	167, 284
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	1 cut(s)	351
Hin1II	CATG	2 cut(s)	291, 596
HinfI	GANTC	6 cut(s)	109, 176, 206, 242, 295, 400
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	2 cut(s)	281, 518
Hpy188I	TCNGA	4 cut(s)	79, 261, 373, 574
Hpy188III	TCNNGA	4 cut(s)	95, 146, 194, 404
Hpy8I	GTNNAC	2 cut(s)	281, 518
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	620
HpyCH4V	TGCA	4 cut(s)	11, 125, 287, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	7 cut(s)	35, 54, 107, 395, 431, 510, 543
HpySE526I	ACGT	1 cut(s)	620
Hsp92II	CATG	2 cut(s)	291, 596
Kzo9I	GATC	5 cut(s)	227, 256, 353, 547, 662
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	2 cut(s)	595, 620
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	620
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	5 cut(s)	229, 258, 355, 549, 664
MboI	GATC	5 cut(s)	227, 256, 353, 547, 662
MboII	GAAGA	5 cut(s)	261, 397, 517, 639, 704
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	2 cut(s)	461, 672
MlyI	GAGTC	2 cut(s)	118, 394
MnlI	CCTC	4 cut(s)	217, 577, 580, 645
MroXI	GAANNNNTTC	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	2 cut(s)	302, 413
MvaI	CCWGG	2 cut(s)	302, 413
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeII	GATC	5 cut(s)	227, 256, 353, 547, 662
NlaIII	CATG	2 cut(s)	291, 596
NlaIV	GGNNCC	1 cut(s)	549
NspI	RCATGY	2 cut(s)	291, 596
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	4 cut(s)	176, 206, 242, 295
PkrI	GCNGC	3 cut(s)	10, 61, 493
PleI	GAGTC	2 cut(s)	117, 394
PpsI	GAGTC	2 cut(s)	117, 394
Psp6I	CCWGG	2 cut(s)	300, 411
PspGI	CCWGG	2 cut(s)	300, 411
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	1 cut(s)	493
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	547
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	4 cut(s)	313, 533, 559, 619
RsaNI	GTAC	4 cut(s)	312, 532, 558, 618
SatI	GCNGC	3 cut(s)	9, 60, 492
Sau3AI	GATC	5 cut(s)	227, 256, 353, 547, 662
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	2 cut(s)	118, 394
ScrFI	CCNGG	2 cut(s)	302, 413
SduI	GDGCHC	1 cut(s)	476
SfaNI	GCATC	2 cut(s)	595, 620
SfcI	CTRYAG	1 cut(s)	9
Sse9I	AATT	2 cut(s)	461, 672
SsiI	CCGC	2 cut(s)	491, 640
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	300, 411
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	623
TaqI	TCGA	2 cut(s)	360, 670
TasI	AATT	2 cut(s)	461, 672
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	4 cut(s)	176, 206, 242, 295
TscAI	CASTG	2 cut(s)	259, 607
TseI	GCWGC	2 cut(s)	8, 59
TspDTI	ATGAA	4 cut(s)	33, 99, 398, 405
TspRI	CASTG	2 cut(s)	259, 607
XceI	RCATGY	2 cut(s)	291, 596
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.