Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004063

Physical Location & Seq

Genomic Coordinates Forward (+)

9121291 .. 9122184

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1053700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAGGCTGAAGATTTAGAAATTTTGGAGAAGGCAATACAAGATAAAATAATTCCTGAGGCAGTCATTGCCAATTCAGTTGTAAGAGAAGATCCAGTAATTGAGGATGAATGGGGAAGAACTCATGCCAGCGGTGTCAATGTTTGTGGCAGAATTATCCTTAATATATGGCGGCTGATCTGTGGTGAAGTCAAGCTCAATATGTACACAGTTGAGGCTGTTGCTCTAGCTGTGTTGAGGCGAAAAGTCCCATATATTTCTAATAAAGTACTGGCAAAATGGTTTTCAAGTGGCCCTGGACAAGCCAGATATCGATGTATTGAATATGTAAATGAGAGAGCGAAGCTGAGCCTTGAAATAATGAATCAGTTAGACATGATAAATCGAACATCAGAACTTGCACGTGTCTTTGGCATTGACTTTTTTTTCAGTTCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

147

Amino Acids

16.63

Weight (kDa)

5.52

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500
fragaria_vesca	FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120
malus_domestica	MD05G1053400.v1.1 MD05G1053600.v1.1 MD05G1053700.v1.1 MD12G1217900.v1.1
prunus_persica	Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1
pyrus_communis	pycom05g04420 pycom12g20340
rosa_chinensis	RchiOBHm_Chr3g0455131
rosa_laevigata	RLG00000025385
rosa_multiflora	Rmu_co8200746.1_g000001 Rmu_sc0041669.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424540
rosa_rugosa	Rorug01G0381700 Rorug03G0004000
rosa_samantha	Rh3AG064900 Rh3BG066900 Rh3CG065300 Rh3DG066800
rosa_wichuraiana	Rw3G005080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	132, 172
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	30
AcvI	CACGTG	1 cut(s)	404
AfaI	GTAC	2 cut(s)	206, 270
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	288, 323, 356
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	3 cut(s)	196, 230, 346
AluI	AGCT	3 cut(s)	196, 230, 346
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	57
BbrPI	CACGTG	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	297
BfaI	CTAG	2 cut(s)	227, 439
BisI	GCNGC	1 cut(s)	173
BlpI	GCTNAGC	1 cut(s)	347
BlsI	GCNGC	1 cut(s)	174
BmcAI	AGTACT	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	313
BsaAI	YACGTR	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	295
Bse1I	ACTGG	2 cut(s)	95, 276
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	297
BseCI	ATCGAT	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	48, 338
BseNI	ACTGG	2 cut(s)	95, 276
BshFI	GGCC	1 cut(s)	294
BshVI	ATCGAT	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	91, 177
Bsp1720I	GCTNAGC	1 cut(s)	347
BspACI	CCGC	2 cut(s)	132, 172
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	2 cut(s)	49, 339
BspDI	ATCGAT	1 cut(s)	313
BspPI	GGATC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	95, 276
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	2 cut(s)	91, 177
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	211
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstAUI	TGTACA	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	57, 347
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	94, 180
BstMBI	GATC	2 cut(s)	91, 177
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	313
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	293
ClaI	ATCGAT	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	205, 269
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	2 cut(s)	125, 376
CviJI	RGCY	9 cut(s)	8, 175, 196, 218, 230, 294, 305, 346, 351
CviKI_1	RGCY	9 cut(s)	8, 175, 196, 218, 230, 294, 305, 346, 351
CviQI	GTAC	2 cut(s)	205, 269
DdeI	CTNAG	2 cut(s)	57, 347
DpnI	GATC	2 cut(s)	93, 179
DpnII	GATC	2 cut(s)	91, 177
Eco32I	GATATC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	30
Eco72I	CACGTG	1 cut(s)	404
Eco81I	CCTNAGG	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	311
FaeI	CATG	2 cut(s)	128, 379
FaiI	YATR	8 cut(s)	126, 167, 169, 203, 253, 255, 327, 377
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	124, 375
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	2 cut(s)	227, 439
GluI	GCNGC	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	128, 379
HinfI	GANTC	1 cut(s)	364
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	57, 347
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	2 cut(s)	128, 379
Kzo9I	GATC	2 cut(s)	91, 177
LpnPI	CCDG	7 cut(s)	69, 108, 142, 257, 282, 309, 319
MaeI	CTAG	2 cut(s)	227, 439
MaeII	ACGT	1 cut(s)	403
MalI	GATC	2 cut(s)	93, 179
MboI	GATC	2 cut(s)	91, 177
MboII	GAAGA	3 cut(s)	23, 101, 129
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	5 cut(s)	21, 51, 73, 99, 153
MnlI	CCTC	4 cut(s)	52, 97, 208, 231
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	2 cut(s)	91, 177
NlaIII	CATG	2 cut(s)	128, 379
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	174
PmaCI	CACGTG	1 cut(s)	404
PmlI	CACGTG	1 cut(s)	404
Ppu21I	YACGTR	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	295
PspCI	CACGTG	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	2 cut(s)	206, 270
RsaNI	GTAC	2 cut(s)	205, 269
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	2 cut(s)	91, 177
Sau96I	GGNCC	1 cut(s)	293
ScaI	AGTACT	1 cut(s)	270
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	4 cut(s)	198, 232, 348, 406
Sse9I	AATT	5 cut(s)	21, 51, 73, 99, 153
SsiI	CCGC	2 cut(s)	132, 172
SspMI	CTAG	2 cut(s)	227, 439
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	2 cut(s)	313, 385
TasI	AATT	5 cut(s)	21, 51, 73, 99, 153
TatI	WGTACW	2 cut(s)	204, 268
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TspDTI	ATGAA	2 cut(s)	123, 377
XapI	RAATTY	1 cut(s)	21
XspI	CTAG	2 cut(s)	227, 439
ZrmI	AGTACT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.