Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004063

Physical Location & Seq

Genomic Coordinates Forward (+)

4506872 .. 4517699

Gene Structure 10828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG066900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4632 bp

ATGCCGCCTTCCGACAGCTTCAGCGTCCGGATCGTCTCCGTCGACTTCTACATGGCGCCGCCCATCCCTGGCCTCGATATCTCCTACAGTAGCTTCCACGGTGGGAAGGTGAATGAGGTACCTGTAATCAGAATTTACGGCTCTACTCCGGCCGGTCAGAAAGCTTGTCTGCACATTCACAGAGCATTACCATACCTATTTGTGCCGTGCAAAGATATACCGATTCAACCACATCAGAAAGGTGATTCGTACACATATGATATATCTCTTGCATTAGAGAAAGCTTTGAAGCTCAAAAGCAGTGCTGGTTCAAAGCGACAACATGTACATGGTTGCAGCCTTGTCCAGGCAAGGAAGCTTTACGGTTACCATTCATCAGAGGAGGTGTTTGTGAAGATATACCTCTATTATCCACATGATGTGACTCGCGCCGCCAATCTTCTTCTGGGAGGTGCAGTTCTTGATAAATGCTTACAGCCCCACGAATCACACATTCCCTTCATTCTCCAATTTATGATTGACTACAACTTGTATGGGATGGGTCATCTGCATCTATCAAAACTGAAGTTTCGTCATCCAATGCCAGATGCTTTTACCCCTAGGAGATCTTTTTACAATGGACTGCCCGGTCAGGACATAGATAATTTAACTGGGATGTCTACAGATGTCCAGGCAGATATTAGTGACCGTCTGCTTTTTGGTTCACCGGTTTGGATATCGTCCACAATTCCAGTAGACTGGACATGGCTTTCTTCTGGTGATGTTGAGGCTTCATCAAATAGAGATGCTAACTGCACTAAACGACAAAGTATTTGTGAACTCGAGGGGGATGCTACTGTAGATGAGATACTCAATCAGCAGTTCAAAATGTATACATCCCTCTCACAAACTCGTTCTGACGTGAAAATGGTTCAATCGCTTATACCAATTTGGGAGGAGTTTGAGAGAAATGGGATACACGAGGCAGCAATATCTTCTAATCCTGCTAAACCACTTCCAGAAGATGTTTTGAAAACTTTATCACTTGGTCCAGAATTTAATGAGAAACTTGTCAAATTGCATTTTGATACAGAAAACTCTTTGCCTTTAACTCAATTAAAGAAAGATGTAAAGTCTATGCACCAAATGACCTCTCCAAAAGATGGAGGAAATTCTGTTGGACTTCGAACTGATAATCTCAATTATGGAGAGATGATGGGATCTCTGTTGACACAAGGTTCTACTGAAGAGACGGATGCAAAACTGAATAAAGAATTGCTAGCATCTCAAGCGATTCAGACATTAAGTATGAAGGCTGCAGATAATGAAGCACTAGCTCTGCTTAGATGGCTTGCCACTTCTCAGGCAGCTGATGATTTGAACTCCGATGATGAACTTGTTCAGGAGACAATACTGAGTCCTTTGTTGCCTGCAACAACTATTGACAAAGTTCTGGAGAAAGCTACTATGGATTATGAGAGTGAATCCCAAAAGGAATGTCAGGACATCCTTGATTCGGTTGGCGACTTTGAGGGATCAAAGGAAAAAGATTCTTATCCCACTGATCGGAACTGTTCTTCCAAAAGTGAACCTGCATGTATGATTCTCCAGGTGAATGGTACTGGGGATGATGTTCTCTCAACTCCATCTCCTTGTGCTGGATCAATCGAAAATATTTCTGAAGTAGAGATGAAGAATGAACTTAGGACTCCTGAACCCCAGGTTACAAAAGATGGTCTAAGCTCCAATCATAAACACAAAAGGAAAAAATTATTATGGGGCTCTTTACCTTTGTCTGCGGCCCAAAAGCTGAAGACTGAGAGTGAACCTGTCAGTTTGTACAAGGAAACTAAGGATCCTGTTGGTACAAGTGCCTCCTCTGAAAGTGAAGTGAGAAAACATGCAGGCACTGATGCTTGTGATAGTACATTGGGAAGATGCTCTCTGCGGGACTTGATGAGGAGAAAGCGATCTTATCGAATTGAGCCACCTGAAAAAGAAGATACACTTTATCAAATGTTGCATTTTGACGAACTTAATGGGAAGTCTCGTGATTCTTTATTAGCTGACAGGCTATCATTAGCCCGACACTCAGTAAGTCATGAGGCTGATGATGTTAAAACAACCAATTCTGGCTGTTCCTTGTATGGTAAACTTCCACTTTTGTCTGGCAGTGTCAACTCTTTAAATGCAAGTACGTTAGATGGAAAATTTGGCACGAATATCAAAATTGCTGCGGAAGTTGGCACTGGAGCAATTGCTCAACATGGGAACATCTTCACAGGCTCTTCTGATGCTCCACCTGTGAATACAGGATTCTGGCAATTAAAGCCTGACAAGCTCGAGTCTGAAGCTTCCCTTGGCCGTTGTGAAACTTTCAACAAATCTAATGCTCAGACTTCCAAGTCAGGTGCTGAGGAAAACTTTTTTGTTGATGAGAGTCTTCATAGTTCTGCTGCTGACCCTGAAGTTTCTTGTGGAGATGGTCACACTGGAAGGGGCATTGATGGCTTATCTTCCAGAAGTGGAGTATCCGAGATACCTTTTGAGATTGGTAAAAATGTCACAACTGACAAAACTGCTTTAAACAATGAAAGGTGTGGTAGCCAGAAACTGGGGAGAGATTCCTTTTTATCTGGGCTTAGTAACTTGTTGCCCTCGATCATCCAGTCTGATGATAAGGACTTAATTGGCATGACCTTCTCTAGGAAACCCCCAATTGCAGACTGGAAGGATGGGGGATTTCTGAGTTCTTCATATTTACGAGAGGAAGGAGCTTTGGATGATATTCTCCCATTTGTTGTGAGAGACTGCCAAAATGAGACAGACATCGAGAACAACTGTGTTAGAAATAGTGAGTCTCATTCTCATCAAGAATCTGCCTTAGGTGTCCCTACTCACTATCAAGCTGATGGCTCTTGTTTGTATCTGTTAACACCTGCAATTTCACCTCCTTCTGCCAAAAATGTATACCGCTGGCTGTCAAGAGGCGACAAAGGATCTTCTGCGAGTCTGACTGGTTCACAGAATTCTTTGCCTAATGATTTGAACGAGCCTTCACTCAAATATGGTTCTGTATGTGATGTGCAACCTAATCTACCCCAAGGACCTCAAGTAGATCATAGAAATCTTGAAGCAGAAAGGATTCCTTTTAGTAATGACATGACAGAAGTATTGGAAAGAGAAGCCGATGTTATAAGAGTTAAAACATACCCTGACCGCTCACAAGATAGTTCTCAGATTTCAGGTCCAGATGGGAGATCAAAATCCACTCCGCTTAGTCAAACTGGATTTCGAGACCCGGCAAGTGTTGGCATTGGCCAGCAGCTGACGTTGTTAAGTATAGAGGTTCAAGCAGAATCTAGAGCTGATCTTCGACCCGATCCTCAGTTTGATGCTATCAATATTGTATTGCTTGCTATTCAGAATGATTGTGACTCCATCGTTGAAGTTCATGTACTTATGCACAGCGATGCTGAAAATTGTCAGAGGAGTCATGACGGGATTTCTGACTGCAAGCTGTTTGTGTTTCATGAAGAGAAGTACTTATTTCATCATTTTATCAAGTTTGTATGCTCGTTCGACCCTGATATATTAATGGGTTGGGATATTCAAGGTGGTTCCCTTGGTTTTTTGGCTGAAAGGGCTTCACATCTTGGTATAGGTTTACTCAACAAGATATCTAGAACACCATCTGAAGCCAAGATGGTGGCTGAGGATTCAGAAGTTCCGGAGAAAGTCTTACAAGATAACCTGGCTGCTGACTCAATTGTTGCTGATTCAGTTGTATTAGAAGATCCAATAATTGAGGATGAATGGGGACGGACTCATTCCAGCGGTGTCCATGTTGGTGGTAGAATTGTACTTAATGTCTGGCGGCTGATGCGCAGTGAAGTGAAGCTTAATATGTACACAGTTGAAGCTGTTTCTGAAGTTGTGTTGAGGCGGAAAGTCCCATATATTCCTAATAAACTACTCACAAAATGGTTTTTAAGTGGTCCTGGAAGAGCAAGATACCAATGTATCGAATATGTGAAGGAGAGAGCAGAATTAAACCTTGAGATGATGAATCAATTAGATATGATAAATCGAACATCAGAACTTGCACGTGTCTTTGGCATTGACTTTTTTTCTGTTCTCTCTAGAGGCTCCCAATACCGTGTTGAATCTATGGTTCTGAGACTGGCACATACACAAAACTATCTTGCCATTTCCCCTGGGAAACAACAGGTAGCTTCGCAGCCAGCAATGGAATGCATCCCTCTTGTAATGGAACCAGAATCTGGTTTTTATGCAGATCCAGTAGTTGTTTTGGATTTTCAGTCTCTTTATCCATCAATGATAATTGCATACAACCTTTGCTATTCTACATGCCTTGGAAAAGTTGCGCCATCAGAGCCAAATACACTTGGTGTCAGTTCATTTTCACCAGATCCACATGATCTGCATGATTTAAAAGATCAAATACTGCTTACTCCAAATGGTGTTATGTGTGTGCCAGCAAAGGTCCGTAAAGGCGTACTGCCACGCTTATTGGACGAAATATTGTCAACCAGAATAATGGTTAAACAAGCAATGAAAAAATTGTCTCCATCACAGAAAGTTCTTCACAGGGTATGGAATAAAAATTTATATAATTCTGTACATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

1543

Amino Acids

170.38

Weight (kDa)

5.43

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REV3_N	PF24065	6 - 60	3.5e-18	DNA polymerase zeta catalytic subunit, N-terminal
POL3_N	PF24055	62 - 141	4.3e-22	DNA polymerase delta catalytic subunit-like, N-terminal domain
DNA_pol_B_exo1	PF03104	1102 - 1227	1.6e-08	DNA polymerase family B, exonuclease domain
DNA_pol_B	PF00136	1369 - 1526	5.4e-32	DNA polymerase family B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500
fragaria_vesca	FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120
malus_domestica	MD05G1053400.v1.1 MD05G1053600.v1.1 MD05G1053700.v1.1 MD12G1217900.v1.1
prunus_persica	Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1
pyrus_communis	pycom05g04420 pycom12g20340
rosa_chinensis	RchiOBHm_Chr3g0455131
rosa_laevigata	RLG00000025385
rosa_multiflora	Rmu_co8200746.1_g000001 Rmu_sc0041669.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424540
rosa_rugosa	Rorug01G0381700 Rorug03G0004000
rosa_samantha	Rh3AG064900 Rh3BG066900 Rh3CG065300 Rh3DG066800
rosa_wichuraiana	Rw3G005080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3176
AarI	CACCTGC	1 cut(s)	2926
AasI	GACNNNNNNGTC	2 cut(s)	627, 2383
Acc16I	TGCGCA	1 cut(s)	3866
Acc36I	ACCTGC	2 cut(s)	1579, 2926
Acc65I	GGTACC	1 cut(s)	118
AccB1I	GGYRCC	2 cut(s)	55, 118
AccB7I	CCANNNNNTGG	3 cut(s)	1142, 2593, 4262
AccBSI	CCGCTC	1 cut(s)	3201
AccI	GTMKAC	5 cut(s)	42, 659, 735, 872, 2949
AccII	CGCG	1 cut(s)	429
AccIII	TCCGGA	2 cut(s)	27, 3709
AcoI	YGGCCR	3 cut(s)	150, 2341, 3298
AcsI	RAATTY	6 cut(s)	132, 1034, 1150, 2189, 3007, 4606
AcuI	CTGAAG	9 cut(s)	4, 584, 1245, 1680, 1811, 2349, 2466, 3696, 3930
AcvI	CACGTG	1 cut(s)	4088
AcyI	GRCGYC	1 cut(s)	56
AdeI	CACNNNGTG	1 cut(s)	4391
AfiI	CCNNNNNNNGG	9 cut(s)	68, 346, 1142, 1495, 1545, 1637, 2593, 2685, 4262
AflIII	ACRYGT	2 cut(s)	322, 4087
AgeI	ACCGGT	1 cut(s)	706
AjiI	CACGTC	1 cut(s)	901
AjnI	CCWGG	8 cut(s)	67, 345, 669, 1587, 1698, 3732, 3979, 4195
AjuI	GAANNNNNNNTTGG	2 cut(s)	2322, 2354
AloI	GAACNNNNNNTCC	4 cut(s)	441, 473, 1541, 1573
AlwNI	CAGNNNCTG	5 cut(s)	1889, 2393, 2593, 3307, 4262
Ama87I	CYCGRG	2 cut(s)	821, 2321
Aor13HI	TCCGGA	2 cut(s)	27, 3709
AoxI	GGCC	5 cut(s)	70, 150, 1779, 2341, 3298
ApeKI	GCWGC	9 cut(s)	336, 965, 1295, 1346, 2213, 2435, 3304, 3737, 4219
ApoI	RAATTY	6 cut(s)	132, 1034, 1150, 2189, 3007, 4606
ArsI	GACNNNNNNTTYG	4 cut(s)	795, 827, 1462, 1494
AseI	ATTAAT	1 cut(s)	3575
AsiGI	ACCGGT	1 cut(s)	706
Asp700I	GAANNNNTTC	3 cut(s)	1377, 2255, 3123
Asp718I	GGTACC	1 cut(s)	118
AspA2I	CCTAGG	1 cut(s)	599
AspLEI	GCGC	4 cut(s)	58, 431, 3867, 4369
AspS9I	GGNCC	6 cut(s)	1028, 1780, 3086, 3227, 3977, 4486
AsuC2I	CCSGG	2 cut(s)	627, 3281
AsuHPI	GGTGA	7 cut(s)	121, 254, 696, 770, 1603, 2919, 4398
AsuII	TTCGAA	1 cut(s)	1165
AsuNHI	GCTAGC	1 cut(s)	1258
AvaI	CYCGRG	2 cut(s)	821, 2321
AvaII	GGWCC	5 cut(s)	1028, 3086, 3227, 3977, 4486
AvrII	CCTAGG	1 cut(s)	599
AxyI	CCTNAGG	1 cut(s)	2863
BaeI	ACNNNNGTAYC	4 cut(s)	3985, 3985, 4018, 4018
BalI	TGGCCA	1 cut(s)	3300
BamHI	GGATCC	1 cut(s)	1834
BanI	GGYRCC	2 cut(s)	55, 118
BanII	GRGCYC	1 cut(s)	1763
BarI	GAAGNNNNNNTAC	2 cut(s)	3420, 3452
BauI	CACGAG	2 cut(s)	959, 2028
BbrPI	CACGTG	1 cut(s)	4088
BbsI	GAAGAC	2 cut(s)	1799, 2414
BbvCI	CCTCAGC	2 cut(s)	2394, 3693
BbvI	GCAGC	9 cut(s)	348, 977, 1282, 1358, 2200, 2422, 3316, 3724, 4231
BceAI	ACGGC	3 cut(s)	154, 190, 2328
BcgI	CGANNNNNNTGC	2 cut(s)	812, 846
BciT130I	CCWGG	8 cut(s)	69, 347, 671, 1589, 1700, 3734, 3981, 4197
BciVI	GTATCC	2 cut(s)	948, 2521
BcnI	CCSGG	2 cut(s)	627, 3281
BfaI	CTAG	7 cut(s)	600, 1259, 1313, 2685, 3342, 3663, 4122
BfmI	CTRYAG	4 cut(s)	85, 660, 837, 1296
BfoI	RGCGCY	1 cut(s)	59
BfuAI	ACCTGC	2 cut(s)	1579, 2926
BfuI	GTATCC	2 cut(s)	948, 2521
BglII	AGATCT	1 cut(s)	605
BlnI	CCTAGG	1 cut(s)	599
BmcAI	AGTACT	1 cut(s)	3524
Bme18I	GGWCC	5 cut(s)	1028, 3086, 3227, 3977, 4486
BmeT110I	CYCGRG	2 cut(s)	821, 2321
BmgBI	CACGTC	1 cut(s)	901
BmgT120I	GGNCC	6 cut(s)	1028, 1780, 3086, 3227, 3977, 4486
BmiI	GGNNCC	6 cut(s)	57, 120, 1836, 3601, 4129, 4254
BmrI	ACTGGG	3 cut(s)	660, 1611, 2603
BmtI	GCTAGC	1 cut(s)	1262
BmuI	ACTGGG	3 cut(s)	660, 1611, 2603
BpiI	GAAGAC	2 cut(s)	1799, 2414
BpmI	CTGGAG	3 cut(s)	1454, 1571, 2250
Bpu10I	CCTNAGC	2 cut(s)	2394, 3693
Bpu14I	TTCGAA	1 cut(s)	1165
BpuEI	CTTGAG	3 cut(s)	1251, 3075, 4058
BpuMI	CCSGG	2 cut(s)	627, 3281
BsaAI	YACGTR	1 cut(s)	4088
BsaBI	GATNNNNATC	2 cut(s)	1533, 3244
BsaHI	GRCGYC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	3270
BsaWI	WCCGGW	3 cut(s)	27, 706, 3709
BsaXI	ACNNNNNCTCC	4 cut(s)	441, 471, 1612, 1642
Bsc4I	CCNNNNNNNGG	9 cut(s)	68, 346, 1142, 1495, 1545, 1637, 2593, 2685, 4262
Bse118I	RCCGGY	2 cut(s)	152, 706
Bse21I	CCTNAGG	1 cut(s)	2863
Bse3DI	GCAATG	2 cut(s)	4233, 4560
Bse8I	GATNNNNATC	2 cut(s)	1533, 3244
BseAI	TCCGGA	2 cut(s)	27, 3709
BseBI	CCWGG	8 cut(s)	69, 347, 671, 1589, 1700, 3734, 3981, 4197
BseJI	GATNNNNATC	2 cut(s)	1533, 3244
BseLI	CCNNNNNNNGG	9 cut(s)	68, 346, 1142, 1495, 1545, 1637, 2593, 2685, 4262
BseMI	GCAATG	2 cut(s)	4233, 4560
BseRI	GAGGAG	5 cut(s)	395, 950, 1846, 1954, 3484
BseX3I	CGGCCG	1 cut(s)	150
BseXI	GCAGC	9 cut(s)	348, 977, 1282, 1358, 2200, 2422, 3316, 3724, 4231
BsgI	GTGCAG	3 cut(s)	155, 474, 778
Bsh1236I	CGCG	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	5 cut(s)	72, 152, 1781, 2343, 3300
BshNI	GGYRCC	2 cut(s)	55, 118
BshTI	ACCGGT	1 cut(s)	706
BsiEI	CGRYCG	1 cut(s)	153
BsiHKCI	CYCGRG	2 cut(s)	821, 2321
BsiSI	CCGG	7 cut(s)	28, 149, 153, 627, 707, 3281, 3710
BslFI	GGGAC	4 cut(s)	1943, 2855, 3813, 3917
BslI	CCNNNNNNNGG	9 cut(s)	68, 346, 1142, 1495, 1545, 1637, 2593, 2685, 4262
BsmBI	CGTCTC	2 cut(s)	40, 1223
BsmFI	GGGAC	4 cut(s)	1943, 2855, 3813, 3917
BsmI	GAATGC	1 cut(s)	4238
BsnI	GGCC	5 cut(s)	72, 152, 1781, 2343, 3300
Bso31I	GGTCTC	1 cut(s)	3270
BsoBI	CYCGRG	2 cut(s)	821, 2321
Bsp119I	TTCGAA	1 cut(s)	1165
Bsp1286I	GDGCHC	1 cut(s)	1763
Bsp13I	TCCGGA	2 cut(s)	27, 3709
Bsp1407I	TGTACA	4 cut(s)	325, 1818, 3888, 4621
BspANI	GGCC	5 cut(s)	72, 152, 1781, 2343, 3300
BspEI	TCCGGA	2 cut(s)	27, 3709
BspFNI	CGCG	1 cut(s)	429
BspHI	TCATGA	3 cut(s)	2080, 3475, 3511
BspLI	GGNNCC	6 cut(s)	57, 120, 1836, 3601, 4129, 4254
BspMAI	CTGCAG	1 cut(s)	1300
BspMI	ACCTGC	2 cut(s)	1579, 2926
BspOI	GCTAGC	1 cut(s)	1262
BspQI	GCTCTTC	2 cut(s)	2272, 3979
BspT104I	TTCGAA	1 cut(s)	1165
BspT107I	GGYRCC	2 cut(s)	55, 118
BspTNI	GGTCTC	1 cut(s)	3270
BsrBI	CCGCTC	1 cut(s)	3201
BsrDI	GCAATG	2 cut(s)	4233, 4560
BsrFI	RCCGGY	2 cut(s)	152, 706
BsrGI	TGTACA	4 cut(s)	325, 1818, 3888, 4621
BssAI	RCCGGY	2 cut(s)	152, 706
BssNAI	GTATAC	2 cut(s)	873, 2950
BssNI	GRCGYC	1 cut(s)	56
BssSI	CACGAG	2 cut(s)	959, 2028
BssT1I	CCWWGG	5 cut(s)	599, 2338, 3082, 3604, 4354
Bst1107I	GTATAC	2 cut(s)	873, 2950
Bst2BI	CACGAG	2 cut(s)	959, 2028
Bst2UI	CCWGG	8 cut(s)	69, 347, 671, 1589, 1700, 3734, 3981, 4197
Bst4CI	ACNGT	9 cut(s)	89, 101, 365, 689, 838, 1553, 2822, 3895, 4139
Bst6I	CTCTTC	4 cut(s)	1221, 2272, 3510, 3979
BstACI	GRCGYC	1 cut(s)	56
BstAUI	TGTACA	4 cut(s)	325, 1818, 3888, 4621
BstBAI	YACGTR	1 cut(s)	4088
BstBI	TTCGAA	1 cut(s)	1165
BstDSI	CCRYGG	1 cut(s)	97
BstEII	GGTNACC	1 cut(s)	365
BstENI	CCTNNNNNAGG	2 cut(s)	344, 2683
BstFNI	CGCG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	4 cut(s)	58, 431, 3867, 4369
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	8 cut(s)	1268, 1327, 2308, 2317, 2487, 3623, 3862, 4375
BstNI	CCWGG	8 cut(s)	69, 347, 671, 1589, 1700, 3734, 3981, 4197
BstNSI	RCATGY	4 cut(s)	326, 1578, 1883, 4353
BstPI	GGTNACC	1 cut(s)	365
BstSFI	CTRYAG	4 cut(s)	85, 660, 837, 1296
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	9 cut(s)	348, 977, 1282, 1358, 2200, 2422, 3316, 3724, 4231
BstV2I	GAAGAC	2 cut(s)	1799, 2414
BstX2I	RGATCY	7 cut(s)	605, 1199, 1834, 2978, 3775, 4276, 4411
BstXI	CCANNNNNNTGG	5 cut(s)	738, 1595, 3688, 3830, 4540
BstYI	RGATCY	7 cut(s)	605, 1199, 1834, 2978, 3775, 4276, 4411
BstZ17I	GTATAC	2 cut(s)	873, 2950
BstZI	CGGCCG	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	2863
BsuI	GTATCC	2 cut(s)	948, 2521
BsuRI	GGCC	5 cut(s)	72, 152, 1781, 2343, 3300
BtgI	CCRYGG	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	3465
BtrI	CACGTC	1 cut(s)	901
BtsI	GCAGTG	3 cut(s)	307, 2158, 3874
BtsIMutI	CAGTG	7 cut(s)	307, 1539, 1887, 2158, 2226, 2469, 3874
BveI	ACCTGC	2 cut(s)	1579, 2926
CaiI	CAGNNNCTG	5 cut(s)	1889, 2393, 2593, 3307, 4262
CciI	TCATGA	3 cut(s)	2080, 3475, 3511
CfoI	GCGC	4 cut(s)	58, 431, 3867, 4369
Cfr10I	RCCGGY	2 cut(s)	152, 706
Cfr13I	GGNCC	6 cut(s)	1028, 1780, 3086, 3227, 3977, 4486
CseI	GACGC	1 cut(s)	13
CspAI	ACCGGT	1 cut(s)	706
CspCI	CAANNNNNGTGG	2 cut(s)	4494, 4529
DinI	GGCGCC	1 cut(s)	57
DraI	TTTAAA	3 cut(s)	2166, 2565, 4434
DraIII	CACNNNGTG	1 cut(s)	4391
DrdI	GACNNNNNNGTC	2 cut(s)	627, 2383
DseDI	GACNNNNNNGTC	2 cut(s)	627, 2383
EaeI	YGGCCR	3 cut(s)	150, 2341, 3298
EagI	CGGCCG	1 cut(s)	150
Eam1104I	CTCTTC	4 cut(s)	1221, 2272, 3510, 3979
EarI	CTCTTC	4 cut(s)	1221, 2272, 3510, 3979
EciI	GGCGGA	1 cut(s)	3940
EclXI	CGGCCG	1 cut(s)	150
Eco130I	CCWWGG	5 cut(s)	599, 2338, 3082, 3604, 4354
Eco24I	GRGCYC	1 cut(s)	1763
Eco31I	GGTCTC	1 cut(s)	3270
Eco32I	GATATC	3 cut(s)	79, 717, 3660
Eco47I	GGWCC	5 cut(s)	1028, 3086, 3227, 3977, 4486
Eco52I	CGGCCG	1 cut(s)	150
Eco57I	CTGAAG	9 cut(s)	4, 584, 1245, 1680, 1811, 2349, 2466, 3696, 3930
Eco72I	CACGTG	1 cut(s)	4088
Eco81I	CCTNAGG	1 cut(s)	2863
Eco88I	CYCGRG	2 cut(s)	821, 2321
Eco91I	GGTNACC	1 cut(s)	365
EcoNI	CCTNNNNNAGG	2 cut(s)	344, 2683
EcoO109I	RGGNCCY	1 cut(s)	3086
EcoO65I	GGTNACC	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	3007
EcoRII	CCWGG	8 cut(s)	67, 345, 669, 1587, 1698, 3732, 3979, 4195
EcoRV	GATATC	3 cut(s)	79, 717, 3660
EcoT14I	CCWWGG	5 cut(s)	599, 2338, 3082, 3604, 4354
EcoT22I	ATGCAT	1 cut(s)	4238
EcoT38I	GRGCYC	1 cut(s)	1763
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
ErhI	CCWWGG	5 cut(s)	599, 2338, 3082, 3604, 4354
Esp3I	CGTCTC	2 cut(s)	40, 1223
FalI	AAGNNNNNCTT	8 cut(s)	1971, 2003, 2322, 2354, 3112, 3144, 3864, 3896
FaqI	GGGAC	4 cut(s)	1943, 2855, 3813, 3917
FauI	CCCGC	1 cut(s)	1920
FauNDI	CATATG	1 cut(s)	256
FblI	GTMKAC	5 cut(s)	42, 659, 735, 872, 2949
FriOI	GRGCYC	1 cut(s)	1763
FspBI	CTAG	7 cut(s)	600, 1259, 1313, 2685, 3342, 3663, 4122
FspI	TGCGCA	1 cut(s)	3866
GlaI	GCGC	4 cut(s)	57, 430, 3866, 4368
GsuI	CTGGAG	3 cut(s)	1454, 1571, 2250
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	5 cut(s)	72, 152, 1781, 2343, 3300
HapII	CCGG	7 cut(s)	28, 149, 153, 627, 707, 3281, 3710
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	4 cut(s)	58, 431, 3867, 4369
Hin1I	GRCGYC	1 cut(s)	56
Hin6I	GCGC	4 cut(s)	56, 429, 3865, 4367
HinP1I	GCGC	4 cut(s)	56, 429, 3865, 4367
HincII	GTYRAC	5 cut(s)	43, 1209, 2158, 2913, 4530
HindII	GTYRAC	5 cut(s)	43, 1209, 2158, 2913, 4530
HindIII	AAGCTT	5 cut(s)	162, 282, 356, 2331, 3878
HpaI	GTTAAC	1 cut(s)	2913
HpaII	CCGG	7 cut(s)	28, 149, 153, 627, 707, 3281, 3710
HphI	GGTGA	7 cut(s)	121, 254, 696, 770, 1603, 2919, 4398
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	9 cut(s)	89, 101, 365, 689, 838, 1553, 2822, 3895, 4139
HpyCH4IV	ACGT	4 cut(s)	900, 2177, 3311, 4087
HpyF10VI	GCNNNNNNNGC	8 cut(s)	1268, 1327, 2308, 2317, 2487, 3623, 3862, 4375
HpySE526I	ACGT	4 cut(s)	900, 2177, 3311, 4087
Hsp92I	GRCGYC	1 cut(s)	56
HspAI	GCGC	4 cut(s)	56, 429, 3865, 4367
KasI	GGCGCC	1 cut(s)	55
Kpn2I	TCCGGA	2 cut(s)	27, 3709
KpnI	GGTACC	1 cut(s)	122
KspAI	GTTAAC	1 cut(s)	2913
LguI	GCTCTTC	2 cut(s)	2272, 3979
LmnI	GCTCC	5 cut(s)	1727, 2231, 2281, 2753, 4133
Lsp1109I	GCAGC	9 cut(s)	348, 977, 1282, 1358, 2200, 2422, 3316, 3724, 4231
MaeI	CTAG	7 cut(s)	600, 1259, 1313, 2685, 3342, 3663, 4122
MaeII	ACGT	4 cut(s)	900, 2177, 3311, 4087
MaeIII	GTNAC	8 cut(s)	365, 421, 683, 1702, 2465, 2542, 2624, 3413
MbiI	CCGCTC	1 cut(s)	3201
MfeI	CAATTG	3 cut(s)	2235, 2697, 3747
MflI	RGATCY	7 cut(s)	605, 1199, 1834, 2978, 3775, 4276, 4411
MhlI	GDGCHC	1 cut(s)	1763
MlsI	TGGCCA	1 cut(s)	3300
MluNI	TGGCCA	1 cut(s)	3300
Mly113I	GGCGCC	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	36, 1138
Mox20I	TGGCCA	1 cut(s)	3300
Mph1103I	ATGCAT	1 cut(s)	4238
MroI	TCCGGA	2 cut(s)	27, 3709
MroXI	GAANNNNTTC	3 cut(s)	1377, 2255, 3123
MscI	TGGCCA	1 cut(s)	3300
MslI	CAYNNNNRTG	3 cut(s)	327, 3450, 3828
Msp20I	TGGCCA	1 cut(s)	3300
MspA1I	CMGCKG	4 cut(s)	1349, 2955, 3307, 3816
MspI	CCGG	7 cut(s)	28, 149, 153, 627, 707, 3281, 3710
MunI	CAATTG	3 cut(s)	2235, 2697, 3747
Mva1269I	GAATGC	1 cut(s)	4238
MvaI	CCWGG	8 cut(s)	69, 347, 671, 1589, 1700, 3734, 3981, 4197
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	8 cut(s)	1268, 1327, 2308, 2317, 2487, 3623, 3862, 4375
NarI	GGCGCC	1 cut(s)	56
NciI	CCSGG	2 cut(s)	627, 3281
NdeI	CATATG	1 cut(s)	256
NheI	GCTAGC	1 cut(s)	1258
NlaIV	GGNNCC	6 cut(s)	57, 120, 1836, 3601, 4129, 4254
NmuCI	GTSAC	5 cut(s)	421, 683, 2465, 2542, 3413
NsbI	TGCGCA	1 cut(s)	3866
NsiI	ATGCAT	1 cut(s)	4238
NspI	RCATGY	4 cut(s)	326, 1578, 1883, 4353
NspV	TTCGAA	1 cut(s)	1165
PaeR7I	CTCGAG	2 cut(s)	821, 2321
PagI	TCATGA	3 cut(s)	2080, 3475, 3511
PaqCI	CACCTGC	1 cut(s)	2926
PasI	CCCWGGG	1 cut(s)	4196
PciI	ACATGT	1 cut(s)	322
PciSI	GCTCTTC	2 cut(s)	2272, 3979
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PctI	GAATGC	1 cut(s)	4238
PdmI	GAANNNNTTC	3 cut(s)	1377, 2255, 3123
PflMI	CCANNNNNTGG	3 cut(s)	1142, 2593, 4262
PfoI	TCCNGGA	1 cut(s)	3979
PinAI	ACCGGT	1 cut(s)	706
PluTI	GGCGCC	1 cut(s)	59
PmaCI	CACGTG	1 cut(s)	4088
PmlI	CACGTG	1 cut(s)	4088
Ppu21I	YACGTR	1 cut(s)	4088
PpuMI	RGGWCCY	1 cut(s)	3086
PscI	ACATGT	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	3575
PsiI	TTATAA	1 cut(s)	3176
Psp5II	RGGWCCY	1 cut(s)	3086
Psp6I	CCWGG	8 cut(s)	67, 345, 669, 1587, 1698, 3732, 3979, 4195
PspCI	CACGTG	1 cut(s)	4088
PspEI	GGTNACC	1 cut(s)	365
PspGI	CCWGG	8 cut(s)	67, 345, 669, 1587, 1698, 3732, 3979, 4195
PspN4I	GGNNCC	6 cut(s)	57, 120, 1836, 3601, 4129, 4254
PspPI	GGNCC	6 cut(s)	1028, 1780, 3086, 3227, 3977, 4486
PspPPI	RGGWCCY	1 cut(s)	3086
PspXI	VCTCGAGB	2 cut(s)	821, 2321
PstI	CTGCAG	1 cut(s)	1300
PstNI	CAGNNNCTG	5 cut(s)	1889, 2393, 2593, 3307, 4262
PsuI	RGATCY	7 cut(s)	605, 1199, 1834, 2978, 3775, 4276, 4411
PvuII	CAGCTG	2 cut(s)	1349, 3307
RseI	CAYNNNNRTG	3 cut(s)	327, 3450, 3828
SalI	GTCGAC	1 cut(s)	41
SapI	GCTCTTC	2 cut(s)	2272, 3979
Sau96I	GGNCC	6 cut(s)	1028, 1780, 3086, 3227, 3977, 4486
ScaI	AGTACT	1 cut(s)	3524
SduI	GDGCHC	1 cut(s)	1763
SfcI	CTRYAG	4 cut(s)	85, 660, 837, 1296
SfoI	GGCGCC	1 cut(s)	57
Sfr274I	CTCGAG	2 cut(s)	821, 2321
SfuI	TTCGAA	1 cut(s)	1165
SinI	GGWCC	5 cut(s)	1028, 3086, 3227, 3977, 4486
SlaI	CTCGAG	2 cut(s)	821, 2321
SmiMI	CAYNNNNRTG	3 cut(s)	327, 3450, 3828
SmlI	CTYRAG	5 cut(s)	821, 1266, 2321, 3090, 4037
SmoI	CTYRAG	5 cut(s)	821, 1266, 2321, 3090, 4037
SspDI	GGCGCC	1 cut(s)	55
SspI	AATATT	3 cut(s)	1654, 3385, 4524
SspMI	CTAG	7 cut(s)	600, 1259, 1313, 2685, 3342, 3663, 4122
StyI	CCWWGG	5 cut(s)	599, 2338, 3082, 3604, 4354
TaaI	ACNGT	9 cut(s)	89, 101, 365, 689, 838, 1553, 2822, 3895, 4139
TaiI	ACGT	4 cut(s)	903, 2180, 3314, 4090
TatI	WGTACW	8 cut(s)	325, 1818, 1904, 3436, 3522, 3841, 3888, 4621
TauI	GCSGC	5 cut(s)	7, 61, 434, 1781, 3859
TscAI	CASTG	7 cut(s)	307, 1546, 1894, 2158, 2233, 2476, 3874
TseFI	GTSAC	5 cut(s)	421, 683, 2465, 2542, 3413
TseI	GCWGC	9 cut(s)	336, 965, 1295, 1346, 2213, 2435, 3304, 3737, 4219
Tsp45I	GTSAC	5 cut(s)	421, 683, 2465, 2542, 3413
TspGWI	ACGGA	4 cut(s)	28, 1247, 3817, 4478
TspRI	CASTG	7 cut(s)	307, 1546, 1894, 2158, 2233, 2476, 3874
Van91I	CCANNNNNTGG	3 cut(s)	1142, 2593, 4262
VpaK11BI	GGWCC	5 cut(s)	1028, 3086, 3227, 3977, 4486
VspI	ATTAAT	1 cut(s)	3575
XagI	CCTNNNNNAGG	2 cut(s)	344, 2683
XapI	RAATTY	6 cut(s)	132, 1034, 1150, 2189, 3007, 4606
XbaI	TCTAGA	3 cut(s)	3341, 3662, 4121
XceI	RCATGY	4 cut(s)	326, 1578, 1883, 4353
XcmI	CCANNNNNNNNNTGG	2 cut(s)	442, 2703
XhoI	CTCGAG	2 cut(s)	821, 2321
XmaJI	CCTAGG	1 cut(s)	599
XmiI	GTMKAC	5 cut(s)	42, 659, 735, 872, 2949
XmnI	GAANNNNTTC	3 cut(s)	1377, 2255, 3123
XspI	CTAG	7 cut(s)	600, 1259, 1313, 2685, 3342, 3663, 4122
ZrmI	AGTACT	1 cut(s)	3524
Zsp2I	ATGCAT	1 cut(s)	4238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.