Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004063

Physical Location & Seq

Genomic Coordinates Forward (+)

9119648 .. 9121289

Gene Structure 1642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1053600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGTGTCCCTACTCACTATCAAACCGATGACTATTACTTGTATTTGTTAACACCTGCAACTTCACCCCCGTCTGCCGAAAAGGTGAATAGATGGTTGTCAAGTGATGAAAAAGATGATGTTCCACCTACTCTGCCCCAAGGACCTCAAGAGAATCATGAAAATCATGAAGAAGAAAGGAACCATTTCTGCACTGACAGGACGGGAATAGGTCAAAGAGAAGGAGATGCTGTTAAAGTTCAACTAAACTCCGAATGCGCACAAGATAATTCTCAGATTTCTGGCCCAGATGGGAGATCAAAGCCCACTCCTCTTAAATCAAATTGGATTCAGGGACCCTGCAAGTGTTGGCGGAGGCCAACAGCTGACATTGTTAAGCATAGAGGTTTAGTTCAAGCAGAATCAAGAGGAGATCTTCGACCTGATCCTCGGTTTGATGCCATCAATTTTATCTCTCTCGCTATTCAGAATGATAGCGATCCTATTGTTGAAGTTCATGTGCTTTTGCTCAGTAAAGCTGAAGGTTCTCAGAGGAGTCTTGATGGAATTTCTGGCTGCAAGGTGTTATTTTTTTATGAGGAGAAGTACTTATTTGATCATTTTACGAAAATTGTGTGCTCATTGGACCCAGATGTTTTGATGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

216

Amino Acids

24.18

Weight (kDa)

5.13

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500
fragaria_vesca	FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120
malus_domestica	MD05G1053400.v1.1 MD05G1053600.v1.1 MD05G1053700.v1.1 MD12G1217900.v1.1
prunus_persica	Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1
pyrus_communis	pycom05g04420 pycom12g20340
rosa_chinensis	RchiOBHm_Chr3g0455131
rosa_laevigata	RLG00000025385
rosa_multiflora	Rmu_co8200746.1_g000001 Rmu_sc0041669.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424540
rosa_rugosa	Rorug01G0381700 Rorug03G0004000
rosa_samantha	Rh3AG064900 Rh3BG066900 Rh3CG065300 Rh3DG066800
rosa_wichuraiana	Rw3G005080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	64
Acc16I	TGCGCA	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	64
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	2 cut(s)	419, 473
AcsI	RAATTY	1 cut(s)	546
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	1 cut(s)	587
AgsI	TTSAA	3 cut(s)	242, 395, 491
AluBI	AGCT	2 cut(s)	365, 518
AluI	AGCT	2 cut(s)	365, 518
Alw21I	GWGCWC	1 cut(s)	620
AlwI	GGATC	2 cut(s)	419, 473
AoxI	GGCC	2 cut(s)	283, 356
ApeKI	GCWGC	1 cut(s)	555
ApoI	RAATTY	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	4 cut(s)	143, 284, 335, 625
AsuHPI	GGTGA	2 cut(s)	57, 97
AvaII	GGWCC	3 cut(s)	143, 335, 625
Bbv12I	GWGCWC	1 cut(s)	620
BbvI	GCAGC	1 cut(s)	542
BccI	CCATC	5 cut(s)	87, 284, 449, 536, 634
BclI	TGATCA	1 cut(s)	595
BfuAI	ACCTGC	1 cut(s)	64
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	1 cut(s)	556
BlsI	GCNGC	1 cut(s)	557
BmcAI	AGTACT	1 cut(s)	587
Bme18I	GGWCC	3 cut(s)	143, 335, 625
BmgT120I	GGNCC	4 cut(s)	143, 284, 335, 625
BmiI	GGNNCC	4 cut(s)	182, 336, 337, 627
BmsI	GCATC	2 cut(s)	217, 427
BpuEI	CTTGAG	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	139, 428
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bse8I	GATNNNNATC	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	139, 428
BseJI	GATNNNNATC	1 cut(s)	477
BseMII	CTCAG	3 cut(s)	287, 523, 542
BseRI	GAGGAG	4 cut(s)	300, 423, 547, 593
BseXI	GCAGC	1 cut(s)	542
BsgI	GTGCAG	1 cut(s)	175
BshFI	GGCC	2 cut(s)	285, 358
BsiHKAI	GWGCWC	1 cut(s)	620
BslFI	GGGAC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	285, 358
Bsp1286I	GDGCHC	1 cut(s)	620
Bsp143I	GATC	5 cut(s)	296, 412, 424, 478, 595
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	2 cut(s)	285, 358
BspCNI	CTCAG	3 cut(s)	286, 522, 541
BspHI	TCATGA	2 cut(s)	157, 166
BspLI	GGNNCC	4 cut(s)	182, 336, 337, 627
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	2 cut(s)	419, 473
BssECI	CCNNGG	2 cut(s)	139, 428
BssMI	GATC	5 cut(s)	296, 412, 424, 478, 595
BssT1I	CCWWGG	1 cut(s)	139
BstDEI	CTNAG	3 cut(s)	273, 509, 528
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	5 cut(s)	299, 415, 427, 481, 598
BstMBI	GATC	5 cut(s)	296, 412, 424, 478, 595
BstV1I	GCAGC	1 cut(s)	542
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	285, 358
BtsIMutI	CAGTG	1 cut(s)	192
BveI	ACCTGC	1 cut(s)	64
CciI	TCATGA	2 cut(s)	157, 166
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	4 cut(s)	143, 284, 335, 625
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	3 cut(s)	158, 167, 497
CviJI	RGCY	6 cut(s)	285, 304, 358, 365, 518, 555
CviKI_1	RGCY	6 cut(s)	285, 304, 358, 365, 518, 555
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	3 cut(s)	273, 509, 528
DpnI	GATC	5 cut(s)	298, 414, 426, 480, 597
DpnII	GATC	5 cut(s)	296, 412, 424, 478, 595
EciI	GGCGGA	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	139
Eco47I	GGWCC	3 cut(s)	143, 335, 625
Eco57I	CTGAAG	1 cut(s)	540
EcoO109I	RGGNCCY	2 cut(s)	143, 335
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	3 cut(s)	161, 170, 500
FaiI	YATR	5 cut(s)	159, 168, 381, 498, 576
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	3 cut(s)	157, 166, 496
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	1 cut(s)	556
Fsp4HI	GCNGC	1 cut(s)	556
FspAI	RTGCGCAY	1 cut(s)	259
FspI	TGCGCA	1 cut(s)	259
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	1 cut(s)	556
HaeIII	GGCC	2 cut(s)	285, 358
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	3 cut(s)	161, 170, 500
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	4 cut(s)	154, 328, 401, 535
HpaI	GTTAAC	1 cut(s)	51
HphI	GGTGA	2 cut(s)	57, 97
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	4 cut(s)	253, 276, 468, 531
Hpy188III	TCNNGA	5 cut(s)	149, 158, 167, 405, 539
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	215, 515
HpyCH4V	TGCA	4 cut(s)	59, 192, 342, 558
HpyF3I	CTNAG	3 cut(s)	273, 509, 528
Hsp92II	CATG	3 cut(s)	161, 170, 500
HspAI	GCGC	1 cut(s)	258
KflI	GGGWCCC	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	595
KspAI	GTTAAC	1 cut(s)	51
Kzo9I	GATC	5 cut(s)	296, 412, 424, 478, 595
LpnPI	CCDG	9 cut(s)	69, 184, 267, 300, 317, 352, 435, 537, 642
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	2 cut(s)	217, 427
MalI	GATC	5 cut(s)	298, 414, 426, 480, 597
MboI	GATC	5 cut(s)	296, 412, 424, 478, 595
MboII	GAAGA	3 cut(s)	182, 185, 407
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	620
MluCI	AATT	5 cut(s)	268, 322, 445, 546, 609
MlyI	GAGTC	1 cut(s)	544
MnlI	CCTC	8 cut(s)	156, 321, 348, 377, 401, 438, 525, 571
MroXI	GAANNNNTTC	1 cut(s)	185
MseI	TTAA	4 cut(s)	50, 234, 315, 375
MspA1I	CMGCKG	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	260
NdeII	GATC	5 cut(s)	296, 412, 424, 478, 595
NlaIII	CATG	3 cut(s)	161, 170, 500
NlaIV	GGNNCC	4 cut(s)	182, 336, 337, 627
NsbI	TGCGCA	1 cut(s)	259
PagI	TCATGA	2 cut(s)	157, 166
PaqCI	CACCTGC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	3 cut(s)	154, 328, 401
PkrI	GCNGC	1 cut(s)	557
PleI	GAGTC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	543
PpuMI	RGGWCCY	2 cut(s)	143, 335
Psp5II	RGGWCCY	2 cut(s)	143, 335
PspN4I	GGNNCC	4 cut(s)	182, 336, 337, 627
PspPI	GGNCC	4 cut(s)	143, 284, 335, 625
PspPPI	RGGWCCY	2 cut(s)	143, 335
PsuI	RGATCY	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
SaqAI	TTAA	4 cut(s)	50, 234, 315, 375
SatI	GCNGC	1 cut(s)	556
Sau3AI	GATC	5 cut(s)	296, 412, 424, 478, 595
Sau96I	GGNCC	4 cut(s)	143, 284, 335, 625
ScaI	AGTACT	1 cut(s)	587
SchI	GAGTC	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	620
SfaNI	GCATC	2 cut(s)	217, 427
SinI	GGWCC	3 cut(s)	143, 335, 625
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	5 cut(s)	268, 322, 445, 546, 609
SsiI	CCGC	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	139
TaqI	TCGA	1 cut(s)	418
TasI	AATT	5 cut(s)	268, 322, 445, 546, 609
TatI	WGTACW	1 cut(s)	585
TfiI	GAWTC	3 cut(s)	154, 328, 401
Tru1I	TTAA	4 cut(s)	50, 234, 315, 375
Tru9I	TTAA	4 cut(s)	50, 234, 315, 375
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	1 cut(s)	555
TspDTI	ATGAA	4 cut(s)	123, 174, 183, 485
TspRI	CASTG	1 cut(s)	199
VpaK11BI	GGWCC	3 cut(s)	143, 335, 625
XapI	RAATTY	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	185
ZrmI	AGTACT	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.