Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041669.1

Orthogroup ID

OG0004063

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 896

Gene Structure 895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041669.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgccagatgcttttacccctaggagatctttttacaatggactgcccggtcaggacatagataatttaactgggatgtctacagatttccaggcagatattagtgaccatctgctttttggttcatcggtttggatatcgtccacaattccagtagactggacatggctttcttctggtgatgttgaggcttcatcaaatagagatgctaactgcactaaacgacaaagtatttgtgaactcgagggggatgctactgtagatgagatactcaatcagcagttcaaaatgtatacatccctctcgcaaactcgttctgacgtgaaaatggttcaatcgcttataccaatttgggaggagttcgagagaaatgggatacacgaggcagcactatcttctaatcctgctaaaccacttccagaagatgttttgaaaactttatcacttggtccagaatttaatgagaaacttgtcaaattgcattttgatacagaaaactctttgcctttaactcaattacagaaagatgtaaagtctatgcaccaaatgacctctccaaaagatggaggaaattctgttggacttcgaactgataatctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

200

Amino Acids

22.29

Weight (kDa)

4.65

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500
fragaria_vesca	FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120
malus_domestica	MD05G1053400.v1.1 MD05G1053600.v1.1 MD05G1053700.v1.1 MD12G1217900.v1.1
prunus_persica	Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1
pyrus_communis	pycom05g04420 pycom12g20340
rosa_chinensis	RchiOBHm_Chr3g0455131
rosa_laevigata	RLG00000025385
rosa_multiflora	Rmu_co8200746.1_g000001 Rmu_sc0041669.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424540
rosa_rugosa	Rorug01G0381700 Rorug03G0004000
rosa_samantha	Rh3AG064900 Rh3BG066900 Rh3CG065300 Rh3DG066800
rosa_wichuraiana	Rw3G005080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	48
AccB7I	CCANNNNNTGG	1 cut(s)	563
AccI	GTMKAC	3 cut(s)	80, 156, 293
AcsI	RAATTY	2 cut(s)	455, 571
AfiI	CCNNNNNNNGG	1 cut(s)	563
AgsI	TTSAA	3 cut(s)	286, 335, 433
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	90
Ama87I	CYCGRG	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	2 cut(s)	455, 571
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AspA2I	CCTAGG	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	449
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	191
AsuII	TTCGAA	1 cut(s)	586
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	449
AvrII	CCTAGG	1 cut(s)	20
BauI	CACGAG	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	2 cut(s)	117, 557
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	2 cut(s)	81, 258
BfuI	GTATCC	1 cut(s)	369
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	1 cut(s)	387
BlnI	CCTAGG	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	2 cut(s)	48, 92
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	242
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	449
BmrFI	CCNGG	2 cut(s)	48, 92
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	196, 241
BmuI	ACTGGG	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	586
BpuMI	CCSGG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	563
Bse1I	ACTGG	3 cut(s)	76, 152, 164
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	3 cut(s)	81, 256, 296
BseLI	CCNNNNNNNGG	1 cut(s)	563
BseNI	ACTGG	3 cut(s)	76, 152, 164
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	563
BsoBI	CYCGRG	1 cut(s)	242
Bsp119I	TTCGAA	1 cut(s)	586
Bsp143I	GATC	1 cut(s)	26
BspT104I	TTCGAA	1 cut(s)	586
BsrI	ACTGG	3 cut(s)	76, 152, 164
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	1 cut(s)	26
BssNAI	GTATAC	1 cut(s)	294
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	1 cut(s)	20
Bst1107I	GTATAC	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	259
BstBI	TTCGAA	1 cut(s)	586
BstF5I	GGATG	3 cut(s)	81, 256, 296
BstKTI	GATC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	46, 90
BstSFI	CTRYAG	2 cut(s)	81, 258
BstV1I	GCAGC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	26
BstXI	CCANNNNNNTGG	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	26
BstZ17I	GTATAC	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	369
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	3 cut(s)	81, 256, 296
Cfr13I	GGNCC	1 cut(s)	449
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	2 cut(s)	169, 191
CviKI_1	RGCY	2 cut(s)	169, 191
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
DrdI	GACNNNNNNGTC	1 cut(s)	48
DseDI	GACNNNNNNGTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	1 cut(s)	168
FaiI	YATR	5 cut(s)	59, 166, 294, 344, 539
FatI	CATG	1 cut(s)	164
FblI	GTMKAC	3 cut(s)	80, 156, 293
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	3 cut(s)	88, 263, 283
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	1 cut(s)	387
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	1 cut(s)	168
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	5 cut(s)	81, 144, 157, 239, 294
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	4 cut(s)	53, 364, 419, 452
Hpy8I	GTNNAC	5 cut(s)	81, 144, 157, 239, 294
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	216, 481, 541
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	26
Lsp1109I	GCAGC	1 cut(s)	398
LweI	GCATC	2 cut(s)	196, 241
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	3 cut(s)	165, 387, 434
MflI	RGATCY	1 cut(s)	26
MluCI	AATT	7 cut(s)	64, 147, 348, 455, 476, 515, 571
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	7 cut(s)	181, 238, 311, 349, 376, 560, 562
MseI	TTAA	3 cut(s)	68, 459, 509
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	48, 92
MvaI	CCWGG	1 cut(s)	92
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	586
PaeR7I	CTCGAG	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	563
PkrI	GCNGC	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	449
PspXI	VCTCGAGB	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	68, 459, 509
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	449
ScrFI	CCNGG	2 cut(s)	48, 92
SetI	ASST	2 cut(s)	324, 554
SfaNI	GCATC	2 cut(s)	196, 241
SfcI	CTRYAG	2 cut(s)	81, 258
Sfr274I	CTCGAG	1 cut(s)	242
SfuI	TTCGAA	1 cut(s)	586
SinI	GGWCC	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	7 cut(s)	64, 147, 348, 455, 476, 515, 571
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	46, 90
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	3 cut(s)	243, 363, 586
TasI	AATT	7 cut(s)	64, 147, 348, 455, 476, 515, 571
Tru1I	TTAA	3 cut(s)	68, 459, 509
Tru9I	TTAA	3 cut(s)	68, 459, 509
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	114, 183
Van91I	CCANNNNNTGG	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	2 cut(s)	455, 571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	242
XmaJI	CCTAGG	1 cut(s)	20
XmiI	GTMKAC	3 cut(s)	80, 156, 293
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.