C4-type zinc-finger of DNA polymerase delta
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 |
| fragaria_vesca | FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 |
| malus_domestica | MD05G1053400.v1.1 MD05G1053600.v1.1 MD05G1053700.v1.1 MD12G1217900.v1.1 |
| prunus_persica | Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1 |
| pyrus_communis | pycom05g04420 pycom12g20340 |
| rosa_chinensis | RchiOBHm_Chr3g0455131 |
| rosa_laevigata | RLG00000025385 |
| rosa_multiflora | Rmu_co8200746.1_g000001 Rmu_sc0041669.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00424540 |
| rosa_rugosa | Rorug01G0381700 Rorug03G0004000 |
| rosa_samantha | Rh3AG064900 Rh3BG066900 Rh3CG065300 Rh3DG066800 |
| rosa_wichuraiana | Rw3G005080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2309 |
| AarI | CACCTGC | 1 cut(s) | 2059 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1516 |
| Acc16I | TGCGCA | 1 cut(s) | 2999 |
| Acc36I | ACCTGC | 3 cut(s) | 712, 2059, 4608 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 275, 1726, 3395 |
| AccBSI | CCGCTC | 1 cut(s) | 2334 |
| AccI | GTMKAC | 3 cut(s) | 5, 2082, 4858 |
| AccII | CGCG | 1 cut(s) | 4880 |
| AccIII | TCCGGA | 1 cut(s) | 2842 |
| AcoI | YGGCCR | 5 cut(s) | 1474, 2431, 3802, 3847, 4503 |
| AcsI | RAATTY | 5 cut(s) | 167, 283, 1322, 2140, 4269 |
| AcuI | CTGAAG | 8 cut(s) | 378, 813, 944, 1482, 1599, 2829, 3063, 4277 |
| AcvI | CACGTG | 1 cut(s) | 3221 |
| AdeI | CACNNNGTG | 1 cut(s) | 3524 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 275, 628, 678, 770, 1726, 1818, 3395, 3961, 4636 |
| AflIII | ACRYGT | 2 cut(s) | 3220, 4166 |
| AjiI | CACGTC | 1 cut(s) | 34 |
| AjnI | CCWGG | 9 cut(s) | 720, 831, 2865, 3112, 3328, 4108, 4456, 4500, 4740 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1455, 1487 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 674, 706 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 1022, 1526, 1726, 2440, 3395, 4201 |
| Ama87I | CYCGRG | 1 cut(s) | 1454 |
| Aor13HI | TCCGGA | 1 cut(s) | 2842 |
| AoxI | GGCC | 8 cut(s) | 912, 1474, 2431, 3802, 3847, 3952, 4461, 4503 |
| ApaI | GGGCCC | 1 cut(s) | 4465 |
| ApoI | RAATTY | 5 cut(s) | 167, 283, 1322, 2140, 4269 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 595, 627, 3920, 3952 |
| AseI | ATTAAT | 1 cut(s) | 2708 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 510, 1388, 2256, 4273, 4813, 4969 |
| AspA2I | CCTAGG | 1 cut(s) | 4400 |
| AspLEI | GCGC | 4 cut(s) | 3000, 3502, 4257, 4882 |
| AspS9I | GGNCC | 9 cut(s) | 161, 913, 2219, 2360, 3110, 3619, 4461, 4462, 4738 |
| AsuC2I | CCSGG | 1 cut(s) | 2414 |
| AsuHPI | GGTGA | 5 cut(s) | 736, 2052, 3531, 4506, 4742 |
| AsuII | TTCGAA | 1 cut(s) | 298 |
| AsuNHI | GCTAGC | 1 cut(s) | 391 |
| AvaI | CYCGRG | 1 cut(s) | 1454 |
| AvaII | GGWCC | 6 cut(s) | 161, 2219, 2360, 3110, 3619, 4738 |
| AvrII | CCTAGG | 1 cut(s) | 4400 |
| AxyI | CCTNAGG | 2 cut(s) | 1996, 4233 |
| BaeGI | GKGCMC | 1 cut(s) | 4465 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 3118, 3118, 3151, 3151 |
| BalI | TGGCCA | 2 cut(s) | 2433, 4505 |
| BamHI | GGATCC | 2 cut(s) | 967, 4486 |
| BanII | GRGCYC | 2 cut(s) | 896, 4465 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2553, 2585 |
| BauI | CACGAG | 2 cut(s) | 92, 1161 |
| BbrPI | CACGTG | 1 cut(s) | 3221 |
| BbsI | GAAGAC | 2 cut(s) | 932, 1547 |
| BbvCI | CCTCAGC | 2 cut(s) | 1527, 2826 |
| BceAI | ACGGC | 2 cut(s) | 1461, 3834 |
| BciT130I | CCWGG | 9 cut(s) | 722, 833, 2867, 3114, 3330, 4110, 4458, 4502, 4742 |
| BciVI | GTATCC | 3 cut(s) | 81, 1654, 4156 |
| BcnI | CCSGG | 1 cut(s) | 2414 |
| BfmI | CTRYAG | 6 cut(s) | 429, 4519, 4601, 4791, 4958, 4980 |
| BfoI | RGCGCY | 1 cut(s) | 4258 |
| BfuAI | ACCTGC | 3 cut(s) | 712, 2059, 4608 |
| BfuI | GTATCC | 3 cut(s) | 81, 1654, 4156 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4469 |
| BlnI | CCTAGG | 1 cut(s) | 4400 |
| BmcAI | AGTACT | 1 cut(s) | 2657 |
| Bme18I | GGWCC | 6 cut(s) | 161, 2219, 2360, 3110, 3619, 4738 |
| BmeT110I | CYCGRG | 1 cut(s) | 1454 |
| BmgBI | CACGTC | 1 cut(s) | 34 |
| BmgT120I | GGNCC | 9 cut(s) | 161, 913, 2219, 2360, 3110, 3619, 4461, 4462, 4738 |
| BmiI | GGNNCC | 8 cut(s) | 969, 2734, 3262, 3387, 4455, 4462, 4463, 4488 |
| BmrI | ACTGGG | 3 cut(s) | 744, 1736, 4625 |
| BmtI | GCTAGC | 1 cut(s) | 395 |
| BmuI | ACTGGG | 3 cut(s) | 744, 1736, 4625 |
| BpiI | GAAGAC | 2 cut(s) | 932, 1547 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4006, 4038 |
| BpmI | CTGGAG | 5 cut(s) | 587, 704, 1383, 4008, 4844 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1527, 2826 |
| Bpu14I | TTCGAA | 1 cut(s) | 298 |
| BpuEI | CTTGAG | 3 cut(s) | 384, 2208, 3191 |
| BpuMI | CCSGG | 1 cut(s) | 2414 |
| BsaAI | YACGTR | 1 cut(s) | 3221 |
| BsaBI | GATNNNNATC | 2 cut(s) | 666, 2377 |
| BsaI | GGTCTC | 1 cut(s) | 2403 |
| BsaWI | WCCGGW | 1 cut(s) | 2842 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 745, 775 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 275, 628, 678, 770, 1726, 1818, 3395, 3961, 4636 |
| Bse21I | CCTNAGG | 2 cut(s) | 1996, 4233 |
| Bse3DI | GCAATG | 3 cut(s) | 3366, 3693, 4714 |
| Bse8I | GATNNNNATC | 2 cut(s) | 666, 2377 |
| BseAI | TCCGGA | 1 cut(s) | 2842 |
| BseBI | CCWGG | 9 cut(s) | 722, 833, 2867, 3114, 3330, 4110, 4458, 4502, 4742 |
| BseJI | GATNNNNATC | 2 cut(s) | 666, 2377 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 275, 628, 678, 770, 1726, 1818, 3395, 3961, 4636 |
| BseMI | GCAATG | 3 cut(s) | 3366, 3693, 4714 |
| BseRI | GAGGAG | 4 cut(s) | 83, 979, 1087, 2617 |
| BseSI | GKGCMC | 1 cut(s) | 4465 |
| BseYI | CCCAGC | 1 cut(s) | 4561 |
| BsgI | GTGCAG | 1 cut(s) | 3837 |
| Bsh1236I | CGCG | 1 cut(s) | 4880 |
| BshFI | GGCC | 8 cut(s) | 914, 1476, 2433, 3804, 3849, 3954, 4463, 4505 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1454 |
| BsiSI | CCGG | 2 cut(s) | 2414, 2843 |
| BslFI | GGGAC | 6 cut(s) | 1076, 1988, 2946, 3050, 4273, 4889 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 275, 628, 678, 770, 1726, 1818, 3395, 3961, 4636 |
| BsmBI | CGTCTC | 2 cut(s) | 356, 4930 |
| BsmFI | GGGAC | 6 cut(s) | 1076, 1988, 2946, 3050, 4273, 4889 |
| BsmI | GAATGC | 1 cut(s) | 3371 |
| BsnI | GGCC | 8 cut(s) | 914, 1476, 2433, 3804, 3849, 3954, 4463, 4505 |
| Bso31I | GGTCTC | 1 cut(s) | 2403 |
| BsoBI | CYCGRG | 1 cut(s) | 1454 |
| Bsp119I | TTCGAA | 1 cut(s) | 298 |
| Bsp120I | GGGCCC | 1 cut(s) | 4461 |
| Bsp1286I | GDGCHC | 2 cut(s) | 896, 4465 |
| Bsp13I | TCCGGA | 1 cut(s) | 2842 |
| Bsp1407I | TGTACA | 2 cut(s) | 951, 3021 |
| BspANI | GGCC | 8 cut(s) | 914, 1476, 2433, 3804, 3849, 3954, 4463, 4505 |
| BspEI | TCCGGA | 1 cut(s) | 2842 |
| BspFNI | CGCG | 1 cut(s) | 4880 |
| BspHI | TCATGA | 3 cut(s) | 1213, 2608, 2644 |
| BspLI | GGNNCC | 8 cut(s) | 969, 2734, 3262, 3387, 4455, 4462, 4463, 4488 |
| BspMAI | CTGCAG | 5 cut(s) | 433, 4605, 4795, 4962, 4984 |
| BspMI | ACCTGC | 3 cut(s) | 712, 2059, 4608 |
| BspOI | GCTAGC | 1 cut(s) | 395 |
| BspQI | GCTCTTC | 2 cut(s) | 1405, 3112 |
| BspT104I | TTCGAA | 1 cut(s) | 298 |
| BspTNI | GGTCTC | 1 cut(s) | 2403 |
| BsrBI | CCGCTC | 1 cut(s) | 2334 |
| BsrDI | GCAATG | 3 cut(s) | 3366, 3693, 4714 |
| BsrGI | TGTACA | 2 cut(s) | 951, 3021 |
| BssNAI | GTATAC | 2 cut(s) | 6, 2083 |
| BssSI | CACGAG | 2 cut(s) | 92, 1161 |
| BssT1I | CCWWGG | 5 cut(s) | 1471, 2215, 2737, 3487, 4400 |
| Bst1107I | GTATAC | 2 cut(s) | 6, 2083 |
| Bst2BI | CACGAG | 2 cut(s) | 92, 1161 |
| Bst2UI | CCWGG | 9 cut(s) | 722, 833, 2867, 3114, 3330, 4110, 4458, 4502, 4742 |
| Bst4CI | ACNGT | 8 cut(s) | 686, 1955, 3028, 3272, 3833, 4097, 4153, 4337 |
| Bst6I | CTCTTC | 6 cut(s) | 354, 1405, 2643, 3112, 3960, 4276 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 3824, 4373, 4902 |
| BstAUI | TGTACA | 2 cut(s) | 951, 3021 |
| BstBAI | YACGTR | 1 cut(s) | 3221 |
| BstBI | TTCGAA | 1 cut(s) | 298 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1816 |
| BstFNI | CGCG | 1 cut(s) | 4880 |
| BstH2I | RGCGCY | 1 cut(s) | 4258 |
| BstHHI | GCGC | 4 cut(s) | 3000, 3502, 4257, 4882 |
| BstNI | CCWGG | 9 cut(s) | 722, 833, 2867, 3114, 3330, 4110, 4458, 4502, 4742 |
| BstNSI | RCATGY | 8 cut(s) | 711, 1016, 3486, 3811, 3937, 4170, 4231, 4920 |
| BstSFI | CTRYAG | 6 cut(s) | 429, 4519, 4601, 4791, 4958, 4980 |
| BstSLI | GKGCMC | 1 cut(s) | 4465 |
| BstUI | CGCG | 1 cut(s) | 4880 |
| BstV2I | GAAGAC | 2 cut(s) | 932, 1547 |
| BstX2I | RGATCY | 7 cut(s) | 332, 967, 2111, 2908, 3409, 3544, 4486 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 728, 2821, 2963, 3673, 4189 |
| BstYI | RGATCY | 7 cut(s) | 332, 967, 2111, 2908, 3409, 3544, 4486 |
| BstZ17I | GTATAC | 2 cut(s) | 6, 2083 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1996, 4233 |
| BsuI | GTATCC | 3 cut(s) | 81, 1654, 4156 |
| BsuRI | GGCC | 8 cut(s) | 914, 1476, 2433, 3804, 3849, 3954, 4463, 4505 |
| BtgZI | GCGATG | 1 cut(s) | 2598 |
| BtrI | CACGTC | 1 cut(s) | 34 |
| BtsI | GCAGTG | 3 cut(s) | 1291, 3007, 4613 |
| BveI | ACCTGC | 3 cut(s) | 712, 2059, 4608 |
| CaiI | CAGNNNCTG | 6 cut(s) | 1022, 1526, 1726, 2440, 3395, 4201 |
| CciI | TCATGA | 3 cut(s) | 1213, 2608, 2644 |
| CfoI | GCGC | 4 cut(s) | 3000, 3502, 4257, 4882 |
| Cfr13I | GGNCC | 9 cut(s) | 161, 913, 2219, 2360, 3110, 3619, 4461, 4462, 4738 |
| CseI | GACGC | 2 cut(s) | 4886, 4947 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3627, 3662 |
| DraI | TTTAAA | 3 cut(s) | 1299, 1698, 3567 |
| DraIII | CACNNNGTG | 1 cut(s) | 3524 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1516 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1516 |
| EaeI | YGGCCR | 5 cut(s) | 1474, 2431, 3802, 3847, 4503 |
| Eam1104I | CTCTTC | 6 cut(s) | 354, 1405, 2643, 3112, 3960, 4276 |
| EarI | CTCTTC | 6 cut(s) | 354, 1405, 2643, 3112, 3960, 4276 |
| EciI | GGCGGA | 1 cut(s) | 3073 |
| Eco130I | CCWWGG | 5 cut(s) | 1471, 2215, 2737, 3487, 4400 |
| Eco24I | GRGCYC | 2 cut(s) | 896, 4465 |
| Eco31I | GGTCTC | 1 cut(s) | 2403 |
| Eco32I | GATATC | 1 cut(s) | 2793 |
| Eco47I | GGWCC | 6 cut(s) | 161, 2219, 2360, 3110, 3619, 4738 |
| Eco57I | CTGAAG | 8 cut(s) | 378, 813, 944, 1482, 1599, 2829, 3063, 4277 |
| Eco72I | CACGTG | 1 cut(s) | 3221 |
| Eco81I | CCTNAGG | 2 cut(s) | 1996, 4233 |
| Eco88I | CYCGRG | 1 cut(s) | 1454 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1816 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2219, 4461 |
| EcoRI | GAATTC | 2 cut(s) | 2140, 4269 |
| EcoRII | CCWGG | 9 cut(s) | 720, 831, 2865, 3112, 3328, 4108, 4456, 4500, 4740 |
| EcoRV | GATATC | 1 cut(s) | 2793 |
| EcoT14I | CCWWGG | 5 cut(s) | 1471, 2215, 2737, 3487, 4400 |
| EcoT22I | ATGCAT | 1 cut(s) | 3371 |
| EcoT38I | GRGCYC | 2 cut(s) | 896, 4465 |
| ErhI | CCWWGG | 5 cut(s) | 1471, 2215, 2737, 3487, 4400 |
| Esp3I | CGTCTC | 2 cut(s) | 356, 4930 |
| FaqI | GGGAC | 6 cut(s) | 1076, 1988, 2946, 3050, 4273, 4889 |
| FauI | CCCGC | 2 cut(s) | 1053, 4634 |
| FauNDI | CATATG | 2 cut(s) | 3775, 3877 |
| FblI | GTMKAC | 3 cut(s) | 5, 2082, 4858 |
| FokI | GGATG | 9 cut(s) | 380, 605, 752, 1763, 1859, 1907, 2936, 3356, 4529 |
| FriOI | GRGCYC | 2 cut(s) | 896, 4465 |
| FspI | TGCGCA | 1 cut(s) | 2999 |
| GlaI | GCGC | 4 cut(s) | 2999, 3501, 4256, 4881 |
| GsaI | CCCAGC | 1 cut(s) | 4565 |
| GsuI | CTGGAG | 5 cut(s) | 587, 704, 1383, 4008, 4844 |
| HaeII | RGCGCY | 1 cut(s) | 4258 |
| HaeIII | GGCC | 8 cut(s) | 914, 1476, 2433, 3804, 3849, 3954, 4463, 4505 |
| HapII | CCGG | 2 cut(s) | 2414, 2843 |
| HgaI | GACGC | 2 cut(s) | 4886, 4947 |
| HhaI | GCGC | 4 cut(s) | 3000, 3502, 4257, 4882 |
| Hin6I | GCGC | 4 cut(s) | 2998, 3500, 4255, 4880 |
| HinP1I | GCGC | 4 cut(s) | 2998, 3500, 4255, 4880 |
| HincII | GTYRAC | 5 cut(s) | 342, 1291, 2046, 3663, 4859 |
| HindII | GTYRAC | 5 cut(s) | 342, 1291, 2046, 3663, 4859 |
| HindIII | AAGCTT | 3 cut(s) | 1464, 3011, 4641 |
| HpaI | GTTAAC | 1 cut(s) | 2046 |
| HpaII | CCGG | 2 cut(s) | 2414, 2843 |
| HphI | GGTGA | 5 cut(s) | 736, 2052, 3531, 4506, 4742 |
| HpyCH4III | ACNGT | 8 cut(s) | 686, 1955, 3028, 3272, 3833, 4097, 4153, 4337 |
| HpyCH4IV | ACGT | 6 cut(s) | 33, 1310, 2444, 3220, 3768, 4414 |
| HpySE526I | ACGT | 6 cut(s) | 33, 1310, 2444, 3220, 3768, 4414 |
| HspAI | GCGC | 4 cut(s) | 2998, 3500, 4255, 4880 |
| Kpn2I | TCCGGA | 1 cut(s) | 2842 |
| KspAI | GTTAAC | 1 cut(s) | 2046 |
| LguI | GCTCTTC | 2 cut(s) | 1405, 3112 |
| LmnI | GCTCC | 8 cut(s) | 860, 1364, 1414, 1886, 3266, 4192, 4453, 4592 |
| MaeII | ACGT | 6 cut(s) | 33, 1310, 2444, 3220, 3768, 4414 |
| MaeIII | GTNAC | 7 cut(s) | 835, 1598, 1675, 1757, 2546, 3769, 4091 |
| MbiI | CCGCTC | 1 cut(s) | 2334 |
| MfeI | CAATTG | 4 cut(s) | 1368, 1830, 2880, 4368 |
| MflI | RGATCY | 7 cut(s) | 332, 967, 2111, 2908, 3409, 3544, 4486 |
| MhlI | GDGCHC | 2 cut(s) | 896, 4465 |
| MlsI | TGGCCA | 2 cut(s) | 2433, 4505 |
| MluNI | TGGCCA | 2 cut(s) | 2433, 4505 |
| MmeI | TCCRAC | 3 cut(s) | 271, 4043, 4570 |
| Mox20I | TGGCCA | 2 cut(s) | 2433, 4505 |
| Mph1103I | ATGCAT | 1 cut(s) | 3371 |
| MroI | TCCGGA | 1 cut(s) | 2842 |
| MroXI | GAANNNNTTC | 6 cut(s) | 510, 1388, 2256, 4273, 4813, 4969 |
| MscI | TGGCCA | 2 cut(s) | 2433, 4505 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2583, 2961 |
| Msp20I | TGGCCA | 2 cut(s) | 2433, 4505 |
| MspA1I | CMGCKG | 5 cut(s) | 482, 2088, 2440, 2949, 4364 |
| MspI | CCGG | 2 cut(s) | 2414, 2843 |
| MunI | CAATTG | 4 cut(s) | 1368, 1830, 2880, 4368 |
| Mva1269I | GAATGC | 1 cut(s) | 3371 |
| MvaI | CCWGG | 9 cut(s) | 722, 833, 2867, 3114, 3330, 4110, 4458, 4502, 4742 |
| MvnI | CGCG | 1 cut(s) | 4880 |
| NciI | CCSGG | 1 cut(s) | 2414 |
| NdeI | CATATG | 2 cut(s) | 3775, 3877 |
| NheI | GCTAGC | 1 cut(s) | 391 |
| NlaIV | GGNNCC | 8 cut(s) | 969, 2734, 3262, 3387, 4455, 4462, 4463, 4488 |
| NmuCI | GTSAC | 4 cut(s) | 1598, 1675, 2546, 3769 |
| NsbI | TGCGCA | 1 cut(s) | 2999 |
| NsiI | ATGCAT | 1 cut(s) | 3371 |
| NspI | RCATGY | 8 cut(s) | 711, 1016, 3486, 3811, 3937, 4170, 4231, 4920 |
| NspV | TTCGAA | 1 cut(s) | 298 |
| PaeI | GCATGC | 2 cut(s) | 3811, 4920 |
| PaeR7I | CTCGAG | 1 cut(s) | 1454 |
| PagI | TCATGA | 3 cut(s) | 1213, 2608, 2644 |
| PaqCI | CACCTGC | 1 cut(s) | 2059 |
| PasI | CCCWGGG | 1 cut(s) | 3329 |
| PciI | ACATGT | 1 cut(s) | 4166 |
| PciSI | GCTCTTC | 2 cut(s) | 1405, 3112 |
| PctI | GAATGC | 1 cut(s) | 3371 |
| PdmI | GAANNNNTTC | 6 cut(s) | 510, 1388, 2256, 4273, 4813, 4969 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 275, 1726, 3395 |
| PfoI | TCCNGGA | 1 cut(s) | 3112 |
| PmaCI | CACGTG | 1 cut(s) | 3221 |
| PmlI | CACGTG | 1 cut(s) | 3221 |
| Ppu21I | YACGTR | 1 cut(s) | 3221 |
| PpuMI | RGGWCCY | 1 cut(s) | 2219 |
| PscI | ACATGT | 1 cut(s) | 4166 |
| PshBI | ATTAAT | 1 cut(s) | 2708 |
| PsiI | TTATAA | 1 cut(s) | 2309 |
| Psp5II | RGGWCCY | 1 cut(s) | 2219 |
| Psp6I | CCWGG | 9 cut(s) | 720, 831, 2865, 3112, 3328, 4108, 4456, 4500, 4740 |
| PspCI | CACGTG | 1 cut(s) | 3221 |
| PspFI | CCCAGC | 1 cut(s) | 4561 |
| PspGI | CCWGG | 9 cut(s) | 720, 831, 2865, 3112, 3328, 4108, 4456, 4500, 4740 |
| PspN4I | GGNNCC | 8 cut(s) | 969, 2734, 3262, 3387, 4455, 4462, 4463, 4488 |
| PspOMI | GGGCCC | 1 cut(s) | 4461 |
| PspPI | GGNCC | 9 cut(s) | 161, 913, 2219, 2360, 3110, 3619, 4461, 4462, 4738 |
| PspPPI | RGGWCCY | 1 cut(s) | 2219 |
| PspXI | VCTCGAGB | 1 cut(s) | 1454 |
| PstI | CTGCAG | 5 cut(s) | 433, 4605, 4795, 4962, 4984 |
| PstNI | CAGNNNCTG | 6 cut(s) | 1022, 1526, 1726, 2440, 3395, 4201 |
| PsuI | RGATCY | 7 cut(s) | 332, 967, 2111, 2908, 3409, 3544, 4486 |
| PvuII | CAGCTG | 3 cut(s) | 482, 2440, 4364 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2583, 2961 |
| SalI | GTCGAC | 1 cut(s) | 4857 |
| SapI | GCTCTTC | 2 cut(s) | 1405, 3112 |
| Sau96I | GGNCC | 9 cut(s) | 161, 913, 2219, 2360, 3110, 3619, 4461, 4462, 4738 |
| ScaI | AGTACT | 1 cut(s) | 2657 |
| SduI | GDGCHC | 2 cut(s) | 896, 4465 |
| SfcI | CTRYAG | 6 cut(s) | 429, 4519, 4601, 4791, 4958, 4980 |
| Sfr274I | CTCGAG | 1 cut(s) | 1454 |
| SfuI | TTCGAA | 1 cut(s) | 298 |
| SinI | GGWCC | 6 cut(s) | 161, 2219, 2360, 3110, 3619, 4738 |
| SlaI | CTCGAG | 1 cut(s) | 1454 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2583, 2961 |
| SmlI | CTYRAG | 4 cut(s) | 399, 1454, 2223, 3170 |
| SmoI | CTYRAG | 4 cut(s) | 399, 1454, 2223, 3170 |
| SphI | GCATGC | 2 cut(s) | 3811, 4920 |
| SspI | AATATT | 3 cut(s) | 787, 2518, 3657 |
| StyI | CCWWGG | 5 cut(s) | 1471, 2215, 2737, 3487, 4400 |
| TaaI | ACNGT | 8 cut(s) | 686, 1955, 3028, 3272, 3833, 4097, 4153, 4337 |
| TaiI | ACGT | 6 cut(s) | 36, 1313, 2447, 3223, 3771, 4417 |
| TatI | WGTACW | 6 cut(s) | 951, 1037, 2569, 2655, 2974, 3021 |
| TauI | GCSGC | 4 cut(s) | 914, 2992, 3807, 3957 |
| TseFI | GTSAC | 4 cut(s) | 1598, 1675, 2546, 3769 |
| Tsp45I | GTSAC | 4 cut(s) | 1598, 1675, 2546, 3769 |
| TspGWI | ACGGA | 3 cut(s) | 380, 2950, 3611 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 275, 1726, 3395 |
| VpaK11BI | GGWCC | 6 cut(s) | 161, 2219, 2360, 3110, 3619, 4738 |
| VspI | ATTAAT | 1 cut(s) | 2708 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1816 |
| XapI | RAATTY | 5 cut(s) | 167, 283, 1322, 2140, 4269 |
| XbaI | TCTAGA | 3 cut(s) | 2474, 2795, 3254 |
| XceI | RCATGY | 8 cut(s) | 711, 1016, 3486, 3811, 3937, 4170, 4231, 4920 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1836 |
| XhoI | CTCGAG | 1 cut(s) | 1454 |
| XmaJI | CCTAGG | 1 cut(s) | 4400 |
| XmiI | GTMKAC | 3 cut(s) | 5, 2082, 4858 |
| XmnI | GAANNNNTTC | 6 cut(s) | 510, 1388, 2256, 4273, 4813, 4969 |
| ZrmI | AGTACT | 1 cut(s) | 2657 |
| Zsp2I | ATGCAT | 1 cut(s) | 3371 |