Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004063

Physical Location & Seq

Genomic Coordinates Forward (+)

5168282 .. 5170384

Gene Structure 2103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04420.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGAAGGTTGCAGATAGTGAGGCACTGGGTCTTCTTAGATGGCTTGCCACTTCTCAGGCCGGTGATGATGTAAACTCTGATGACGAACTTGTTTGTGAAACAATTCTTAGTCCCTTGTTGCCGACAACAACCATTGACAATGTTCTATACAAAGCTAATGTGGATTGTGAGACTGAATCCCTAAAGGAGTGTCAGGACATACTTGATTCGATTGGTGATATGGTTGACTTTGAGAGATCGCAAGAAAGAGCATCTTGCCCTTCAGATCAAAAGAATTCTTCAAAAAGTTCGTCTGAGGGAAGAGTGAATTTAGGACCTCCAGCCATCAGGTGCAAGATGCTAGCTCCAGCTTCAATCATAAGCACAAAAGGAAAAAAATTATGGGGCTCTTTACCTTTCTCTGAGACCTCAAATTTGAAGACAGAAAGGGAACGTGCAGGCACTGGAACTTGTGATGCAGAAGACAGTGGTATGTTGGCAAGATGCTCTGTGAGGCACTTGATGAGGAGAAAGCGATCCTACCAGGTTGAGCCACCTGAAAGTAGTGGGAGGGAGGAAAACGAAGACACACTTCTCTGTGCAAAGCGTTTAGATTTTCAAGTGTCAGGTGCTGATGAGCTTGACAGGAAGCCTCAAGAGTCTTCTGACTTCAGGCTATCATTAGCTGACAAACAATCAGGAATTTATAAGGCTTATAAATATGACTCGAAACCAACGAATTCTGGTTGTTCTCTGTATGAAGTTGGTGCTGGTGCAACAGCTCAATTTCGGAACTCCTTGATTAGAGACCCTTCTCAAGTTCCTTCTGTGAACAAGAGAATACAGACTTGGTCTGCTGAACATGAAGTGGCTGATGGAGATGGTTATGTTGAAAATGGCTTTGAAAGCTTATCTTCCAAGGTTGGAGTATATGAAATGTCTTTTGAGAATCTCATGTGTGCAAATGCCTCAACCGTCAGTGCTGTTCTAAACAATGAGAGGTCTGGTGTCCAAAAACTAGGTAGGGACTCTGTTTCATCTGAGCTCAGACACTCACCACCTGAGTTCATCTATCCGAATGATGAGGACTTAATTGGAATGACATGTCACATTCCACAAGAAACCTCCTGTTCCATACTGGAAGGACAAGGAAGAGCTACGGATGACTATTTCCCCTTCTTTGTGGGAGATTTCCCAGACGAGACCAAAATTCAGAACAAGTGTGTTAGAAGTGAATCCAGCTCTCATGAAGAATCTGTTATGGGTGTCCCTACTCACTATCAAACTGATGGCTCTTACTTGTATTTCTTAACACCTGCAACTTCACCCCCCTTCTGCCGAAAAGGCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

444

Amino Acids

48.81

Weight (kDa)

4.82

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500
fragaria_vesca	FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120
malus_domestica	MD05G1053400.v1.1 MD05G1053600.v1.1 MD05G1053700.v1.1 MD12G1217900.v1.1
prunus_persica	Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1
pyrus_communis	pycom05g04420 pycom12g20340
rosa_chinensis	RchiOBHm_Chr3g0455131
rosa_laevigata	RLG00000025385
rosa_multiflora	Rmu_co8200746.1_g000001 Rmu_sc0041669.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424540
rosa_rugosa	Rorug01G0381700 Rorug03G0004000
rosa_samantha	Rh3AG064900 Rh3BG066900 Rh3CG065300 Rh3DG066800
rosa_wichuraiana	Rw3G005080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	687, 696
AarI	CACCTGC	1 cut(s)	1303
Acc36I	ACCTGC	1 cut(s)	1303
AclWI	GGATC	1 cut(s)	510
AcsI	RAATTY	6 cut(s)	274, 307, 412, 681, 718, 1188
AcuI	CTGAAG	2 cut(s)	246, 634
AflIII	ACRYGT	1 cut(s)	1082
AgsI	TTSAA	6 cut(s)	282, 354, 418, 599, 872, 884
AjnI	CCWGG	1 cut(s)	522
AjuI	GAANNNNNNNTTGG	2 cut(s)	811, 843
Alw21I	GWGCWC	1 cut(s)	1026
Alw26I	GTCTC	4 cut(s)	164, 398, 780, 1175
AlwI	GGATC	1 cut(s)	510
AlwNI	CAGNNNCTG	2 cut(s)	443, 611
AoxI	GGCC	1 cut(s)	57
ApoI	RAATTY	6 cut(s)	274, 307, 412, 681, 718, 1188
ArsI	GACNNNNNNTTYG	4 cut(s)	275, 307, 397, 429
Asp700I	GAANNNNTTC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	4 cut(s)	74, 227, 1026, 1296
AsuNHI	GCTAGC	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	389, 1026
BbsI	GAAGAC	5 cut(s)	23, 425, 468, 570, 633
Bbv12I	GWGCWC	1 cut(s)	1026
BccI	CCATC	5 cut(s)	33, 332, 848, 854, 1262
BciT130I	CCWGG	1 cut(s)	524
BcoDI	GTCTC	4 cut(s)	164, 398, 780, 1175
BfaI	CTAG	2 cut(s)	341, 998
BfuAI	ACCTGC	1 cut(s)	1303
BglI	GCCNNNNNGGC	1 cut(s)	1323
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	524
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	4 cut(s)	260, 327, 445, 473
BmtI	GCTAGC	1 cut(s)	344
BmuI	ACTGGG	1 cut(s)	35
BpiI	GAAGAC	5 cut(s)	23, 425, 468, 570, 633
BpmI	CTGGAG	2 cut(s)	303, 330
BpuEI	CTTGAG	2 cut(s)	618, 780
BsaI	GGTCTC	3 cut(s)	398, 780, 1175
BsaJI	CCNNGG	1 cut(s)	897
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	3 cut(s)	30, 448, 1122
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	897
BseGI	GGATG	1 cut(s)	1147
BseMII	CTCAG	6 cut(s)	68, 285, 393, 1011, 1032, 1039
BseNI	ACTGG	3 cut(s)	30, 448, 1122
BseRI	GAGGAG	1 cut(s)	520
BsgI	GTGCAG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	1026
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	3 cut(s)	96, 1019, 1232
BsmAI	GTCTC	4 cut(s)	164, 398, 780, 1175
BsmFI	GGGAC	3 cut(s)	96, 1019, 1232
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	3 cut(s)	398, 780, 1175
Bsp1286I	GDGCHC	2 cut(s)	389, 1026
Bsp143I	GATC	3 cut(s)	236, 265, 515
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	6 cut(s)	67, 286, 394, 1012, 1033, 1038
BspHI	TCATGA	1 cut(s)	1225
BspMI	ACCTGC	1 cut(s)	1303
BspOI	GCTAGC	1 cut(s)	344
BspPI	GGATC	1 cut(s)	510
BspQI	GCTCTTC	1 cut(s)	1126
BspTNI	GGTCTC	3 cut(s)	398, 780, 1175
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	30, 448, 1122
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	897
BssMI	GATC	3 cut(s)	236, 265, 515
BssT1I	CCWWGG	1 cut(s)	897
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	2 cut(s)	467, 955
Bst6I	CTCTTC	2 cut(s)	295, 1126
BstC8I	GCNNGC	3 cut(s)	45, 342, 439
BstDEI	CTNAG	8 cut(s)	35, 54, 107, 294, 402, 1020, 1025, 1041
BstF5I	GGATG	1 cut(s)	1147
BstKTI	GATC	3 cut(s)	239, 268, 518
BstMAI	GTCTC	4 cut(s)	164, 398, 780, 1175
BstMBI	GATC	3 cut(s)	236, 265, 515
BstMWI	GCNNNNNNNGC	2 cut(s)	885, 1323
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	1086
BstSCI	CCNGG	1 cut(s)	522
BstV2I	GAAGAC	5 cut(s)	23, 425, 468, 570, 633
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	1147
BtsIMutI	CAGTG	4 cut(s)	23, 441, 472, 964
BveI	ACCTGC	1 cut(s)	1303
Cac8I	GCNNGC	3 cut(s)	45, 342, 439
CaiI	CAGNNNCTG	2 cut(s)	443, 611
CciI	TCATGA	1 cut(s)	1225
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	314
CsiI	ACCWGGT	1 cut(s)	522
CviAII	CATG	4 cut(s)	842, 934, 1083, 1226
DdeI	CTNAG	8 cut(s)	35, 54, 107, 294, 402, 1020, 1025, 1041
DpnI	GATC	3 cut(s)	238, 267, 517
DpnII	GATC	3 cut(s)	236, 265, 515
Eam1104I	CTCTTC	2 cut(s)	295, 1126
EarI	CTCTTC	2 cut(s)	295, 1126
Ecl136II	GAGCTC	1 cut(s)	1024
Eco130I	CCWWGG	1 cut(s)	897
Eco24I	GRGCYC	2 cut(s)	389, 1026
Eco31I	GGTCTC	3 cut(s)	398, 780, 1175
Eco47I	GGWCC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	1024
Eco57I	CTGAAG	2 cut(s)	246, 634
EcoICRI	GAGCTC	1 cut(s)	1024
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRI	GAATTC	2 cut(s)	274, 718
EcoRII	CCWGG	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	897
EcoT38I	GRGCYC	2 cut(s)	389, 1026
ErhI	CCWWGG	1 cut(s)	897
FaeI	CATG	4 cut(s)	845, 937, 1086, 1229
FalI	AAGNNNNNCTT	6 cut(s)	238, 270, 555, 587, 877, 909
FaqI	GGGAC	3 cut(s)	96, 1019, 1232
FatI	CATG	4 cut(s)	841, 933, 1082, 1225
FokI	GGATG	1 cut(s)	1154
FriOI	GRGCYC	2 cut(s)	389, 1026
FspBI	CTAG	2 cut(s)	341, 998
GsuI	CTGGAG	2 cut(s)	303, 330
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	4 cut(s)	845, 937, 1086, 1229
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	886
HinfI	GANTC	8 cut(s)	176, 206, 638, 704, 928, 1007, 1214, 1232
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	4 cut(s)	74, 227, 1026, 1296
Hpy166II	GTNNAC	3 cut(s)	73, 226, 811
Hpy188III	TCNNGA	4 cut(s)	194, 635, 678, 1226
Hpy8I	GTNNAC	3 cut(s)	73, 226, 811
HpyAV	CCTTC	6 cut(s)	270, 801, 813, 1115, 1165, 1321
HpyCH4III	ACNGT	2 cut(s)	467, 955
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	8 cut(s)	11, 333, 437, 458, 581, 755, 941, 1298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	885, 1323
HpyF3I	CTNAG	8 cut(s)	35, 54, 107, 294, 402, 1020, 1025, 1041
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	4 cut(s)	845, 937, 1086, 1229
Kzo9I	GATC	3 cut(s)	236, 265, 515
LguI	GCTCTTC	1 cut(s)	1126
LmnI	GCTCC	1 cut(s)	349
LweI	GCATC	4 cut(s)	260, 327, 445, 473
MabI	ACCWGGT	1 cut(s)	522
MaeI	CTAG	2 cut(s)	341, 998
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	1085
MalI	GATC	3 cut(s)	238, 267, 517
MboI	GATC	3 cut(s)	236, 265, 515
MhlI	GDGCHC	2 cut(s)	389, 1026
MlyI	GAGTC	3 cut(s)	647, 698, 1001
MmeI	TCCRAC	1 cut(s)	883
MroXI	GAANNNNTTC	1 cut(s)	102
MseI	TTAA	2 cut(s)	1070, 1289
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	2 cut(s)	885, 1323
NdeII	GATC	3 cut(s)	236, 265, 515
NheI	GCTAGC	1 cut(s)	340
NlaIII	CATG	4 cut(s)	845, 937, 1086, 1229
NmuCI	GTSAC	1 cut(s)	1085
NspI	RCATGY	1 cut(s)	1086
PagI	TCATGA	1 cut(s)	1225
PaqCI	CACCTGC	1 cut(s)	1303
PciI	ACATGT	1 cut(s)	1082
PciSI	GCTCTTC	1 cut(s)	1126
PcsI	WCGNNNNNNNCGW	1 cut(s)	713
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	5 cut(s)	176, 206, 928, 1214, 1232
PflFI	GACNNNGTC	1 cut(s)	829
PleI	GAGTC	3 cut(s)	646, 698, 1001
PpsI	GAGTC	3 cut(s)	646, 698, 1001
PpuMI	RGGWCCY	1 cut(s)	314
PscI	ACATGT	1 cut(s)	1082
PsiI	TTATAA	2 cut(s)	687, 696
Psp124BI	GAGCTC	1 cut(s)	1026
Psp5II	RGGWCCY	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspPI	GGNCC	1 cut(s)	314
PspPPI	RGGWCCY	1 cut(s)	314
PstNI	CAGNNNCTG	2 cut(s)	443, 611
PsyI	GACNNNGTC	1 cut(s)	829
SacI	GAGCTC	1 cut(s)	1026
SapI	GCTCTTC	1 cut(s)	1126
SaqAI	TTAA	2 cut(s)	1070, 1289
Sau3AI	GATC	3 cut(s)	236, 265, 515
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	3 cut(s)	647, 698, 1001
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	2 cut(s)	389, 1026
SexAI	ACCWGGT	1 cut(s)	522
SfaNI	GCATC	4 cut(s)	260, 327, 445, 473
SinI	GGWCC	1 cut(s)	314
SmlI	CTYRAG	2 cut(s)	633, 795
SmoI	CTYRAG	2 cut(s)	633, 795
SspMI	CTAG	2 cut(s)	341, 998
SstI	GAGCTC	1 cut(s)	1026
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	2 cut(s)	467, 955
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	209, 707
TfiI	GAWTC	5 cut(s)	176, 206, 928, 1214, 1232
Tru1I	TTAA	2 cut(s)	1070, 1289
Tru9I	TTAA	2 cut(s)	1070, 1289
TscAI	CASTG	4 cut(s)	30, 448, 472, 964
TseFI	GTSAC	1 cut(s)	1085
Tsp45I	GTSAC	1 cut(s)	1085
TspDTI	ATGAA	7 cut(s)	17, 753, 858, 927, 1005, 1036, 1242
TspGWI	ACGGA	1 cut(s)	1154
TspRI	CASTG	4 cut(s)	30, 448, 472, 964
Tth111I	GACNNNGTC	1 cut(s)	829
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	6 cut(s)	274, 307, 412, 681, 718, 1188
XceI	RCATGY	1 cut(s)	1086
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	2 cut(s)	341, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.