C4-type zinc-finger of DNA polymerase delta
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 |
| fragaria_vesca | FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 |
| malus_domestica | MD05G1053400.v1.1 MD05G1053600.v1.1 MD05G1053700.v1.1 MD12G1217900.v1.1 |
| prunus_persica | Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1 |
| pyrus_communis | pycom05g04420 pycom12g20340 |
| rosa_chinensis | RchiOBHm_Chr3g0455131 |
| rosa_laevigata | RLG00000025385 |
| rosa_multiflora | Rmu_co8200746.1_g000001 Rmu_sc0041669.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00424540 |
| rosa_rugosa | Rorug01G0381700 Rorug03G0004000 |
| rosa_samantha | Rh3AG064900 Rh3BG066900 Rh3CG065300 Rh3DG066800 |
| rosa_wichuraiana | Rw3G005080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2269 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1726 |
| Acc16I | TGCGCA | 2 cut(s) | 2789, 3209 |
| Acc36I | ACCTGC | 2 cut(s) | 925, 2269 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 488, 1936, 3605 |
| AccBSI | CCGCTC | 1 cut(s) | 2544 |
| AccI | GTMKAC | 4 cut(s) | 5, 81, 218, 2292 |
| AccIII | TCCGGA | 1 cut(s) | 3052 |
| AcoI | YGGCCR | 5 cut(s) | 1684, 2641, 4012, 4057, 4713 |
| AcsI | RAATTY | 5 cut(s) | 380, 496, 1532, 2350, 4479 |
| AcuI | CTGAAG | 9 cut(s) | 591, 1026, 1157, 1635, 1692, 1809, 3039, 3273, 4487 |
| AcvI | CACGTG | 1 cut(s) | 3431 |
| AdeI | CACNNNGTG | 1 cut(s) | 3734 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 488, 891, 983, 1936, 2028, 3605, 4171 |
| AflIII | ACRYGT | 3 cut(s) | 1596, 3430, 4376 |
| AgeI | ACCGGT | 1 cut(s) | 52 |
| AjiI | CACGTC | 1 cut(s) | 247 |
| AjnI | CCWGG | 9 cut(s) | 15, 933, 1044, 3075, 3322, 3538, 4318, 4666, 4710 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1665, 1697 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 887, 919 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 1235, 1736, 1936, 2650, 3605, 4001, 4411 |
| Ama87I | CYCGRG | 2 cut(s) | 167, 1664 |
| Aor13HI | TCCGGA | 1 cut(s) | 3052 |
| AoxI | GGCC | 8 cut(s) | 1125, 1684, 2641, 4012, 4057, 4162, 4671, 4713 |
| ApaI | GGGCCC | 1 cut(s) | 4675 |
| ApoI | RAATTY | 5 cut(s) | 380, 496, 1532, 2350, 4479 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 141, 173, 808, 840, 4130, 4162 |
| AseI | ATTAAT | 1 cut(s) | 2918 |
| AsiGI | ACCGGT | 1 cut(s) | 52 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 723, 1598, 2466, 4483 |
| AspA2I | CCTAGG | 1 cut(s) | 4610 |
| AspLEI | GCGC | 4 cut(s) | 2790, 3210, 3712, 4467 |
| AspS9I | GGNCC | 9 cut(s) | 374, 1126, 2429, 2570, 2905, 3320, 3829, 4671, 4672 |
| AsuC2I | CCSGG | 1 cut(s) | 2624 |
| AsuHPI | GGTGA | 7 cut(s) | 42, 116, 949, 2262, 2702, 3741, 4716 |
| AsuII | TTCGAA | 1 cut(s) | 511 |
| AvaI | CYCGRG | 2 cut(s) | 167, 1664 |
| AvaII | GGWCC | 6 cut(s) | 374, 2429, 2570, 2905, 3320, 3829 |
| AvrII | CCTAGG | 1 cut(s) | 4610 |
| AxyI | CCTNAGG | 2 cut(s) | 2206, 4443 |
| BaeGI | GKGCMC | 1 cut(s) | 4675 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 3328, 3328, 3361, 3361 |
| BalI | TGGCCA | 2 cut(s) | 2643, 4715 |
| BamHI | GGATCC | 2 cut(s) | 1180, 4696 |
| BanII | GRGCYC | 2 cut(s) | 1109, 4675 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2763, 2795 |
| BauI | CACGAG | 2 cut(s) | 305, 1374 |
| BbrPI | CACGTG | 1 cut(s) | 3431 |
| BbsI | GAAGAC | 1 cut(s) | 1757 |
| BbvCI | CCTCAGC | 2 cut(s) | 1737, 3036 |
| BceAI | ACGGC | 2 cut(s) | 1671, 4044 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 158, 192 |
| BciT130I | CCWGG | 9 cut(s) | 17, 935, 1046, 3077, 3324, 3540, 4320, 4668, 4712 |
| BciVI | GTATCC | 3 cut(s) | 294, 1864, 4366 |
| BcnI | CCSGG | 1 cut(s) | 2624 |
| BfaI | CTAG | 9 cut(s) | 659, 2028, 2685, 3006, 3465, 4116, 4170, 4551, 4611 |
| BfmI | CTRYAG | 4 cut(s) | 6, 183, 642, 4728 |
| BfoI | RGCGCY | 1 cut(s) | 4468 |
| BfuAI | ACCTGC | 2 cut(s) | 925, 2269 |
| BfuI | GTATCC | 3 cut(s) | 294, 1864, 4366 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4679 |
| BlnI | CCTAGG | 1 cut(s) | 4610 |
| BmcAI | AGTACT | 1 cut(s) | 2867 |
| Bme18I | GGWCC | 6 cut(s) | 374, 2429, 2570, 2905, 3320, 3829 |
| BmeT110I | CYCGRG | 2 cut(s) | 167, 1664 |
| BmgBI | CACGTC | 1 cut(s) | 247 |
| BmgT120I | GGNCC | 9 cut(s) | 374, 1126, 2429, 2570, 2905, 3320, 3829, 4671, 4672 |
| BmiI | GGNNCC | 9 cut(s) | 1182, 2907, 2944, 3472, 3597, 4665, 4672, 4673, 4698 |
| BmrI | ACTGGG | 2 cut(s) | 957, 1946 |
| BmuI | ACTGGG | 2 cut(s) | 957, 1946 |
| BpiI | GAAGAC | 1 cut(s) | 1757 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4216, 4248 |
| BpmI | CTGGAG | 4 cut(s) | 800, 917, 1593, 4218 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1737, 3036 |
| Bpu14I | TTCGAA | 1 cut(s) | 511 |
| BpuEI | CTTGAG | 3 cut(s) | 597, 2418, 3401 |
| BpuMI | CCSGG | 1 cut(s) | 2624 |
| BsaAI | YACGTR | 1 cut(s) | 3431 |
| BsaBI | GATNNNNATC | 2 cut(s) | 879, 2587 |
| BsaI | GGTCTC | 1 cut(s) | 2613 |
| BsaJI | CCNNGG | 9 cut(s) | 1044, 1681, 2425, 2947, 3538, 3539, 3697, 4610, 4667 |
| BsaWI | WCCGGW | 2 cut(s) | 52, 3052 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 488, 891, 983, 1936, 2028, 3605, 4171 |
| Bse118I | RCCGGY | 1 cut(s) | 52 |
| Bse21I | CCTNAGG | 2 cut(s) | 2206, 4443 |
| Bse3DI | GCAATG | 3 cut(s) | 3093, 3576, 3903 |
| Bse8I | GATNNNNATC | 2 cut(s) | 879, 2587 |
| BseAI | TCCGGA | 1 cut(s) | 3052 |
| BseBI | CCWGG | 9 cut(s) | 17, 935, 1046, 3077, 3324, 3540, 4320, 4668, 4712 |
| BseDI | CCNNGG | 9 cut(s) | 1044, 1681, 2425, 2947, 3538, 3539, 3697, 4610, 4667 |
| BseJI | GATNNNNATC | 2 cut(s) | 879, 2587 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 488, 891, 983, 1936, 2028, 3605, 4171 |
| BseMI | GCAATG | 3 cut(s) | 3093, 3576, 3903 |
| BseRI | GAGGAG | 4 cut(s) | 296, 1192, 1300, 2827 |
| BseSI | GKGCMC | 1 cut(s) | 4675 |
| BsgI | GTGCAG | 2 cut(s) | 124, 4047 |
| BshFI | GGCC | 8 cut(s) | 1127, 1686, 2643, 4014, 4059, 4164, 4673, 4715 |
| BshTI | ACCGGT | 1 cut(s) | 52 |
| BsiHKCI | CYCGRG | 2 cut(s) | 167, 1664 |
| BsiSI | CCGG | 4 cut(s) | 53, 984, 2624, 3053 |
| BslFI | GGGAC | 5 cut(s) | 1289, 2198, 3156, 3260, 4483 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 488, 891, 983, 1936, 2028, 3605, 4171 |
| BsmBI | CGTCTC | 1 cut(s) | 569 |
| BsmFI | GGGAC | 5 cut(s) | 1289, 2198, 3156, 3260, 4483 |
| BsmI | GAATGC | 1 cut(s) | 3581 |
| BsnI | GGCC | 8 cut(s) | 1127, 1686, 2643, 4014, 4059, 4164, 4673, 4715 |
| Bso31I | GGTCTC | 1 cut(s) | 2613 |
| BsoBI | CYCGRG | 2 cut(s) | 167, 1664 |
| Bsp119I | TTCGAA | 1 cut(s) | 511 |
| Bsp120I | GGGCCC | 1 cut(s) | 4671 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1109, 4675 |
| Bsp13I | TCCGGA | 1 cut(s) | 3052 |
| Bsp1407I | TGTACA | 2 cut(s) | 1164, 3231 |
| BspANI | GGCC | 8 cut(s) | 1127, 1686, 2643, 4014, 4059, 4164, 4673, 4715 |
| BspEI | TCCGGA | 1 cut(s) | 3052 |
| BspHI | TCATGA | 3 cut(s) | 1423, 2818, 2854 |
| BspLI | GGNNCC | 9 cut(s) | 1182, 2907, 2944, 3472, 3597, 4665, 4672, 4673, 4698 |
| BspMAI | CTGCAG | 1 cut(s) | 646 |
| BspMI | ACCTGC | 2 cut(s) | 925, 2269 |
| BspQI | GCTCTTC | 2 cut(s) | 1615, 3322 |
| BspT104I | TTCGAA | 1 cut(s) | 511 |
| BspTNI | GGTCTC | 1 cut(s) | 2613 |
| BsrBI | CCGCTC | 1 cut(s) | 2544 |
| BsrDI | GCAATG | 3 cut(s) | 3093, 3576, 3903 |
| BsrFI | RCCGGY | 1 cut(s) | 52 |
| BsrGI | TGTACA | 2 cut(s) | 1164, 3231 |
| BssAI | RCCGGY | 1 cut(s) | 52 |
| BssECI | CCNNGG | 9 cut(s) | 1044, 1681, 2425, 2947, 3538, 3539, 3697, 4610, 4667 |
| BssNAI | GTATAC | 2 cut(s) | 219, 2293 |
| BssSI | CACGAG | 2 cut(s) | 305, 1374 |
| BssT1I | CCWWGG | 5 cut(s) | 1681, 2425, 2947, 3697, 4610 |
| Bst1107I | GTATAC | 2 cut(s) | 219, 2293 |
| Bst2BI | CACGAG | 2 cut(s) | 305, 1374 |
| Bst2UI | CCWGG | 9 cut(s) | 17, 935, 1046, 3077, 3324, 3540, 4320, 4668, 4712 |
| Bst4CI | ACNGT | 9 cut(s) | 184, 899, 2165, 3238, 3482, 4043, 4307, 4363, 4547 |
| Bst6I | CTCTTC | 6 cut(s) | 567, 1615, 2853, 3322, 4170, 4486 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 4034, 4583 |
| BstAUI | TGTACA | 2 cut(s) | 1164, 3231 |
| BstBAI | YACGTR | 1 cut(s) | 3431 |
| BstBI | TTCGAA | 1 cut(s) | 511 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2026 |
| BstH2I | RGCGCY | 1 cut(s) | 4468 |
| BstHHI | GCGC | 4 cut(s) | 2790, 3210, 3712, 4467 |
| BstNI | CCWGG | 9 cut(s) | 17, 935, 1046, 3077, 3324, 3540, 4320, 4668, 4712 |
| BstNSI | RCATGY | 8 cut(s) | 924, 1229, 1600, 3696, 4021, 4147, 4380, 4441 |
| BstSFI | CTRYAG | 4 cut(s) | 6, 183, 642, 4728 |
| BstSLI | GKGCMC | 1 cut(s) | 4675 |
| BstV2I | GAAGAC | 1 cut(s) | 1757 |
| BstX2I | RGATCY | 7 cut(s) | 545, 1180, 2321, 3118, 3619, 3754, 4696 |
| BstXI | CCANNNNNNTGG | 6 cut(s) | 84, 941, 3031, 3173, 3883, 4399 |
| BstYI | RGATCY | 7 cut(s) | 545, 1180, 2321, 3118, 3619, 3754, 4696 |
| BstZ17I | GTATAC | 2 cut(s) | 219, 2293 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2206, 4443 |
| BsuI | GTATCC | 3 cut(s) | 294, 1864, 4366 |
| BsuRI | GGCC | 8 cut(s) | 1127, 1686, 2643, 4014, 4059, 4164, 4673, 4715 |
| BtgZI | GCGATG | 1 cut(s) | 2808 |
| BtrI | CACGTC | 1 cut(s) | 247 |
| BtsI | GCAGTG | 2 cut(s) | 1501, 3217 |
| BveI | ACCTGC | 2 cut(s) | 925, 2269 |
| CaiI | CAGNNNCTG | 7 cut(s) | 1235, 1736, 1936, 2650, 3605, 4001, 4411 |
| CciI | TCATGA | 3 cut(s) | 1423, 2818, 2854 |
| CfoI | GCGC | 4 cut(s) | 2790, 3210, 3712, 4467 |
| Cfr10I | RCCGGY | 1 cut(s) | 52 |
| Cfr13I | GGNCC | 9 cut(s) | 374, 1126, 2429, 2570, 2905, 3320, 3829, 4671, 4672 |
| CspAI | ACCGGT | 1 cut(s) | 52 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3837, 3872 |
| DraI | TTTAAA | 3 cut(s) | 1509, 1908, 3777 |
| DraIII | CACNNNGTG | 1 cut(s) | 3734 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1726 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1726 |
| EaeI | YGGCCR | 5 cut(s) | 1684, 2641, 4012, 4057, 4713 |
| Eam1104I | CTCTTC | 6 cut(s) | 567, 1615, 2853, 3322, 4170, 4486 |
| EarI | CTCTTC | 6 cut(s) | 567, 1615, 2853, 3322, 4170, 4486 |
| EciI | GGCGGA | 1 cut(s) | 3283 |
| Eco130I | CCWWGG | 5 cut(s) | 1681, 2425, 2947, 3697, 4610 |
| Eco24I | GRGCYC | 2 cut(s) | 1109, 4675 |
| Eco31I | GGTCTC | 1 cut(s) | 2613 |
| Eco32I | GATATC | 2 cut(s) | 63, 3003 |
| Eco47I | GGWCC | 6 cut(s) | 374, 2429, 2570, 2905, 3320, 3829 |
| Eco57I | CTGAAG | 9 cut(s) | 591, 1026, 1157, 1635, 1692, 1809, 3039, 3273, 4487 |
| Eco72I | CACGTG | 1 cut(s) | 3431 |
| Eco81I | CCTNAGG | 2 cut(s) | 2206, 4443 |
| Eco88I | CYCGRG | 2 cut(s) | 167, 1664 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2026 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2429, 4671 |
| EcoRI | GAATTC | 2 cut(s) | 2350, 4479 |
| EcoRII | CCWGG | 9 cut(s) | 15, 933, 1044, 3075, 3322, 3538, 4318, 4666, 4710 |
| EcoRV | GATATC | 2 cut(s) | 63, 3003 |
| EcoT14I | CCWWGG | 5 cut(s) | 1681, 2425, 2947, 3697, 4610 |
| EcoT22I | ATGCAT | 1 cut(s) | 3581 |
| EcoT38I | GRGCYC | 2 cut(s) | 1109, 4675 |
| ErhI | CCWWGG | 5 cut(s) | 1681, 2425, 2947, 3697, 4610 |
| Esp3I | CGTCTC | 1 cut(s) | 569 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1317, 1349, 1665, 1697, 2455, 2487, 3207, 3239 |
| FaqI | GGGAC | 5 cut(s) | 1289, 2198, 3156, 3260, 4483 |
| FauI | CCCGC | 1 cut(s) | 1266 |
| FauNDI | CATATG | 2 cut(s) | 3985, 4087 |
| FblI | GTMKAC | 4 cut(s) | 5, 81, 218, 2292 |
| FriOI | GRGCYC | 2 cut(s) | 1109, 4675 |
| FspBI | CTAG | 9 cut(s) | 659, 2028, 2685, 3006, 3465, 4116, 4170, 4551, 4611 |
| FspI | TGCGCA | 2 cut(s) | 2789, 3209 |
| GlaI | GCGC | 4 cut(s) | 2789, 3209, 3711, 4466 |
| GsuI | CTGGAG | 4 cut(s) | 800, 917, 1593, 4218 |
| HaeII | RGCGCY | 1 cut(s) | 4468 |
| HaeIII | GGCC | 8 cut(s) | 1127, 1686, 2643, 4014, 4059, 4164, 4673, 4715 |
| HapII | CCGG | 4 cut(s) | 53, 984, 2624, 3053 |
| HhaI | GCGC | 4 cut(s) | 2790, 3210, 3712, 4467 |
| Hin6I | GCGC | 4 cut(s) | 2788, 3208, 3710, 4465 |
| HinP1I | GCGC | 4 cut(s) | 2788, 3208, 3710, 4465 |
| HincII | GTYRAC | 4 cut(s) | 555, 1501, 2256, 3873 |
| HindII | GTYRAC | 4 cut(s) | 555, 1501, 2256, 3873 |
| HindIII | AAGCTT | 2 cut(s) | 1674, 3221 |
| HpaI | GTTAAC | 1 cut(s) | 2256 |
| HpaII | CCGG | 4 cut(s) | 53, 984, 2624, 3053 |
| HphI | GGTGA | 7 cut(s) | 42, 116, 949, 2262, 2702, 3741, 4716 |
| HpyCH4III | ACNGT | 9 cut(s) | 184, 899, 2165, 3238, 3482, 4043, 4307, 4363, 4547 |
| HpyCH4IV | ACGT | 8 cut(s) | 246, 1253, 1520, 2654, 3430, 3978, 4624, 4647 |
| HpySE526I | ACGT | 8 cut(s) | 246, 1253, 1520, 2654, 3430, 3978, 4624, 4647 |
| HspAI | GCGC | 4 cut(s) | 2788, 3208, 3710, 4465 |
| Kpn2I | TCCGGA | 1 cut(s) | 3052 |
| KspAI | GTTAAC | 1 cut(s) | 2256 |
| LguI | GCTCTTC | 2 cut(s) | 1615, 3322 |
| LmnI | GCTCC | 7 cut(s) | 1073, 1574, 1624, 2096, 3476, 4402, 4663 |
| MaeI | CTAG | 9 cut(s) | 659, 2028, 2685, 3006, 3465, 4116, 4170, 4551, 4611 |
| MaeII | ACGT | 8 cut(s) | 246, 1253, 1520, 2654, 3430, 3978, 4624, 4647 |
| MaeIII | GTNAC | 8 cut(s) | 29, 1048, 1808, 1885, 1967, 2756, 3979, 4301 |
| MbiI | CCGCTC | 1 cut(s) | 2544 |
| MfeI | CAATTG | 3 cut(s) | 1578, 2040, 4578 |
| MflI | RGATCY | 7 cut(s) | 545, 1180, 2321, 3118, 3619, 3754, 4696 |
| MhlI | GDGCHC | 2 cut(s) | 1109, 4675 |
| MlsI | TGGCCA | 2 cut(s) | 2643, 4715 |
| MluNI | TGGCCA | 2 cut(s) | 2643, 4715 |
| MmeI | TCCRAC | 3 cut(s) | 484, 2883, 4253 |
| Mox20I | TGGCCA | 2 cut(s) | 2643, 4715 |
| Mph1103I | ATGCAT | 1 cut(s) | 3581 |
| MroI | TCCGGA | 1 cut(s) | 3052 |
| MroXI | GAANNNNTTC | 4 cut(s) | 723, 1598, 2466, 4483 |
| MscI | TGGCCA | 2 cut(s) | 2643, 4715 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3171 |
| Msp20I | TGGCCA | 2 cut(s) | 2643, 4715 |
| MspA1I | CMGCKG | 6 cut(s) | 695, 2298, 2650, 3159, 3998, 4574 |
| MspI | CCGG | 4 cut(s) | 53, 984, 2624, 3053 |
| MunI | CAATTG | 3 cut(s) | 1578, 2040, 4578 |
| Mva1269I | GAATGC | 1 cut(s) | 3581 |
| MvaI | CCWGG | 9 cut(s) | 17, 935, 1046, 3077, 3324, 3540, 4320, 4668, 4712 |
| NciI | CCSGG | 1 cut(s) | 2624 |
| NdeI | CATATG | 2 cut(s) | 3985, 4087 |
| NlaIV | GGNNCC | 9 cut(s) | 1182, 2907, 2944, 3472, 3597, 4665, 4672, 4673, 4698 |
| NmuCI | GTSAC | 5 cut(s) | 29, 1808, 1885, 2756, 3979 |
| NsbI | TGCGCA | 2 cut(s) | 2789, 3209 |
| NsiI | ATGCAT | 1 cut(s) | 3581 |
| NspI | RCATGY | 8 cut(s) | 924, 1229, 1600, 3696, 4021, 4147, 4380, 4441 |
| NspV | TTCGAA | 1 cut(s) | 511 |
| PaeI | GCATGC | 1 cut(s) | 4021 |
| PaeR7I | CTCGAG | 2 cut(s) | 167, 1664 |
| PagI | TCATGA | 3 cut(s) | 1423, 2818, 2854 |
| PaqCI | CACCTGC | 1 cut(s) | 2269 |
| PasI | CCCWGGG | 1 cut(s) | 3539 |
| PciI | ACATGT | 2 cut(s) | 1596, 4376 |
| PciSI | GCTCTTC | 2 cut(s) | 1615, 3322 |
| PctI | GAATGC | 1 cut(s) | 3581 |
| PdmI | GAANNNNTTC | 4 cut(s) | 723, 1598, 2466, 4483 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 488, 1936, 3605 |
| PfoI | TCCNGGA | 2 cut(s) | 3322, 4318 |
| PinAI | ACCGGT | 1 cut(s) | 52 |
| PmaCI | CACGTG | 1 cut(s) | 3431 |
| PmlI | CACGTG | 1 cut(s) | 3431 |
| Ppu21I | YACGTR | 1 cut(s) | 3431 |
| PpuMI | RGGWCCY | 1 cut(s) | 2429 |
| PscI | ACATGT | 2 cut(s) | 1596, 4376 |
| PshBI | ATTAAT | 1 cut(s) | 2918 |
| Psp5II | RGGWCCY | 1 cut(s) | 2429 |
| Psp6I | CCWGG | 9 cut(s) | 15, 933, 1044, 3075, 3322, 3538, 4318, 4666, 4710 |
| PspCI | CACGTG | 1 cut(s) | 3431 |
| PspGI | CCWGG | 9 cut(s) | 15, 933, 1044, 3075, 3322, 3538, 4318, 4666, 4710 |
| PspN4I | GGNNCC | 9 cut(s) | 1182, 2907, 2944, 3472, 3597, 4665, 4672, 4673, 4698 |
| PspOMI | GGGCCC | 1 cut(s) | 4671 |
| PspPI | GGNCC | 9 cut(s) | 374, 1126, 2429, 2570, 2905, 3320, 3829, 4671, 4672 |
| PspPPI | RGGWCCY | 1 cut(s) | 2429 |
| PspXI | VCTCGAGB | 2 cut(s) | 167, 1664 |
| PstI | CTGCAG | 1 cut(s) | 646 |
| PstNI | CAGNNNCTG | 7 cut(s) | 1235, 1736, 1936, 2650, 3605, 4001, 4411 |
| PsuI | RGATCY | 7 cut(s) | 545, 1180, 2321, 3118, 3619, 3754, 4696 |
| PvuII | CAGCTG | 4 cut(s) | 695, 2650, 3998, 4574 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3171 |
| SapI | GCTCTTC | 2 cut(s) | 1615, 3322 |
| Sau96I | GGNCC | 9 cut(s) | 374, 1126, 2429, 2570, 2905, 3320, 3829, 4671, 4672 |
| ScaI | AGTACT | 1 cut(s) | 2867 |
| SduI | GDGCHC | 2 cut(s) | 1109, 4675 |
| SfcI | CTRYAG | 4 cut(s) | 6, 183, 642, 4728 |
| Sfr274I | CTCGAG | 2 cut(s) | 167, 1664 |
| SfuI | TTCGAA | 1 cut(s) | 511 |
| SinI | GGWCC | 6 cut(s) | 374, 2429, 2570, 2905, 3320, 3829 |
| SlaI | CTCGAG | 2 cut(s) | 167, 1664 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3171 |
| SmlI | CTYRAG | 5 cut(s) | 167, 612, 1664, 2433, 3380 |
| SmoI | CTYRAG | 5 cut(s) | 167, 612, 1664, 2433, 3380 |
| SphI | GCATGC | 1 cut(s) | 4021 |
| SspI | AATATT | 3 cut(s) | 1000, 2728, 3867 |
| SspMI | CTAG | 9 cut(s) | 659, 2028, 2685, 3006, 3465, 4116, 4170, 4551, 4611 |
| StyI | CCWWGG | 5 cut(s) | 1681, 2425, 2947, 3697, 4610 |
| TaaI | ACNGT | 9 cut(s) | 184, 899, 2165, 3238, 3482, 4043, 4307, 4363, 4547 |
| TaiI | ACGT | 8 cut(s) | 249, 1256, 1523, 2657, 3433, 3981, 4627, 4650 |
| TatI | WGTACW | 5 cut(s) | 1164, 2779, 2865, 3184, 3231 |
| TauI | GCSGC | 4 cut(s) | 1127, 3202, 4017, 4167 |
| TseFI | GTSAC | 5 cut(s) | 29, 1808, 1885, 2756, 3979 |
| Tsp45I | GTSAC | 5 cut(s) | 29, 1808, 1885, 2756, 3979 |
| TspGWI | ACGGA | 3 cut(s) | 593, 3160, 3821 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 488, 1936, 3605 |
| VpaK11BI | GGWCC | 6 cut(s) | 374, 2429, 2570, 2905, 3320, 3829 |
| VspI | ATTAAT | 1 cut(s) | 2918 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2026 |
| XapI | RAATTY | 5 cut(s) | 380, 496, 1532, 2350, 4479 |
| XbaI | TCTAGA | 3 cut(s) | 2684, 3005, 3464 |
| XceI | RCATGY | 8 cut(s) | 924, 1229, 1600, 3696, 4021, 4147, 4380, 4441 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 41, 2046 |
| XhoI | CTCGAG | 2 cut(s) | 167, 1664 |
| XmaJI | CCTAGG | 1 cut(s) | 4610 |
| XmiI | GTMKAC | 4 cut(s) | 5, 81, 218, 2292 |
| XmnI | GAANNNNTTC | 4 cut(s) | 723, 1598, 2466, 4483 |
| XspI | CTAG | 9 cut(s) | 659, 2028, 2685, 3006, 3465, 4116, 4170, 4551, 4611 |
| ZrmI | AGTACT | 1 cut(s) | 2867 |
| Zsp2I | ATGCAT | 1 cut(s) | 3581 |