Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004063

Physical Location & Seq

Genomic Coordinates Reverse (-)

49426990 .. 49431895

Gene Structure 4906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0381700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTCTCGCTGTTACTTCTTCTTCGTCTTCTACTGCAATCTCTGCTCGGACCTTCTCCTCTGACCTCAAAGATCGACCACGACCTCTTCCTCTTGTCTCAGATCGACCACGCCTCCAGCTCCAAGCTCCACCCCTCATCCTCTTCTCTCAGATCGACCACGGCCTCTTCCTCTTGTCTCAGATCGACCACGGCCTCTTCCTCTTTTCTCAGCCGTTCCTCATTCACGACTCACAGTCTCGTAGTCACATCGATCTTTCGATCCTCTCCCTCCGACTCACAGTCACATTTGTCAATCACTTCCTCCACTTCGGCATCTGCGATTACTTCCAGCGGTTCGTTGGGTTTGTGTTTGGTGCCAAGGGGACTAATGCGATTCAGTCCGTCGATTCAGGTACCAAGATCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

136

Amino Acids

15.08

Weight (kDa)

9.1

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500 AT1G67500
fragaria_vesca	FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120 FvH4_6g06120
malus_domestica	MD05G1053400.v1.1 MD05G1053600.v1.1 MD05G1053700.v1.1 MD12G1217900.v1.1
prunus_persica	Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1 Prupe.6G324000_v2.0.a1
pyrus_communis	pycom05g04420 pycom12g20340
rosa_chinensis	RchiOBHm_Chr3g0455131
rosa_laevigata	RLG00000025385
rosa_multiflora	Rmu_co8200746.1_g000001 Rmu_sc0041669.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424540
rosa_rugosa	Rorug01G0381700 Rorug03G0004000
rosa_samantha	Rh3AG064900 Rh3BG066900 Rh3CG065300 Rh3DG066800
rosa_wichuraiana	Rw3G005080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	395
AccB1I	GGYRCC	2 cut(s)	356, 395
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	1 cut(s)	256
AfaI	GTAC	1 cut(s)	397
AhdI	GACNNNNNGTC	2 cut(s)	235, 281
AluBI	AGCT	3 cut(s)	121, 128, 408
AluI	AGCT	3 cut(s)	121, 128, 408
Alw26I	GTCTC	3 cut(s)	103, 183, 243
AlwI	GGATC	1 cut(s)	256
AoxI	GGCC	2 cut(s)	163, 193
Asp718I	GGTACC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	51
BanI	GGYRCC	2 cut(s)	356, 395
BbsI	GAAGAC	1 cut(s)	21
BceAI	ACGGC	3 cut(s)	178, 199, 208
BcoDI	GTCTC	3 cut(s)	103, 183, 243
Bme18I	GGWCC	1 cut(s)	51
BmeRI	GACNNNNNGTC	2 cut(s)	235, 281
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	2 cut(s)	358, 397
BmsI	GCATC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	101
Bsa29I	ATCGAT	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	160, 190, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	3 cut(s)	160, 190, 360
BseGI	GGATG	1 cut(s)	138
BseMII	CTCAG	4 cut(s)	114, 164, 194, 224
BseRI	GAGGAG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	165, 195
BshNI	GGYRCC	2 cut(s)	356, 395
BshVI	ATCGAT	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	379
BsmAI	GTCTC	3 cut(s)	103, 183, 243
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	165, 195
Bsp143I	GATC	7 cut(s)	73, 103, 153, 183, 253, 261, 402
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	2 cut(s)	165, 195
BspCNI	CTCAG	4 cut(s)	113, 163, 193, 223
BspDI	ATCGAT	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	358, 397
BspPI	GGATC	1 cut(s)	256
BspT107I	GGYRCC	2 cut(s)	356, 395
BssECI	CCNNGG	3 cut(s)	160, 190, 360
BssMI	GATC	7 cut(s)	73, 103, 153, 183, 253, 261, 402
BssT1I	CCWWGG	1 cut(s)	360
Bst4CI	ACNGT	2 cut(s)	237, 283
Bst6I	CTCTTC	4 cut(s)	93, 149, 173, 203
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstDEI	CTNAG	4 cut(s)	100, 150, 180, 210
BstDSI	CCRYGG	2 cut(s)	160, 190
BstF5I	GGATG	1 cut(s)	138
BstKTI	GATC	7 cut(s)	76, 106, 156, 186, 256, 264, 405
BstMAI	GTCTC	3 cut(s)	103, 183, 243
BstMBI	GATC	7 cut(s)	73, 103, 153, 183, 253, 261, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	165, 195
BsuTUI	ATCGAT	1 cut(s)	252
BtgI	CCRYGG	2 cut(s)	160, 190
BtsCI	GGATG	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	396
CviJI	RGCY	7 cut(s)	5, 121, 128, 165, 195, 214, 408
CviKI_1	RGCY	7 cut(s)	5, 121, 128, 165, 195, 214, 408
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	4 cut(s)	100, 150, 180, 210
DpnI	GATC	7 cut(s)	75, 105, 155, 185, 255, 263, 404
DpnII	GATC	7 cut(s)	73, 103, 153, 183, 253, 261, 402
DriI	GACNNNNNGTC	2 cut(s)	235, 281
Eam1104I	CTCTTC	4 cut(s)	93, 149, 173, 203
Eam1105I	GACNNNNNGTC	2 cut(s)	235, 281
EarI	CTCTTC	4 cut(s)	93, 149, 173, 203
Eco130I	CCWWGG	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
FaqI	GGGAC	1 cut(s)	379
FokI	GGATG	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	165, 195
HinfI	GANTC	4 cut(s)	230, 276, 376, 389
Hpy188I	TCNGA	6 cut(s)	51, 64, 103, 153, 183, 275
Hpy188III	TCNNGA	1 cut(s)	227
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	2 cut(s)	237, 283
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	4 cut(s)	100, 150, 180, 210
KpnI	GGTACC	1 cut(s)	399
Kzo9I	GATC	7 cut(s)	73, 103, 153, 183, 253, 261, 402
LmnI	GCTCC	2 cut(s)	126, 133
LpnPI	CCDG	3 cut(s)	131, 344, 378
LweI	GCATC	1 cut(s)	324
MaeIII	GTNAC	3 cut(s)	13, 245, 283
MalI	GATC	7 cut(s)	75, 105, 155, 185, 255, 263, 404
MboI	GATC	7 cut(s)	73, 103, 153, 183, 253, 261, 402
MboII	GAAGA	7 cut(s)	12, 15, 21, 80, 136, 160, 190
MlyI	GAGTC	2 cut(s)	224, 270
MmeI	TCCRAC	1 cut(s)	298
MspA1I	CMGCKG	2 cut(s)	334, 408
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	7 cut(s)	73, 103, 153, 183, 253, 261, 402
NlaIV	GGNNCC	2 cut(s)	358, 397
NmuCI	GTSAC	2 cut(s)	245, 283
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	376, 389
PleI	GAGTC	2 cut(s)	224, 270
PpsI	GAGTC	2 cut(s)	224, 270
PspN4I	GGNNCC	2 cut(s)	358, 397
PspPI	GGNCC	1 cut(s)	51
PvuII	CAGCTG	1 cut(s)	408
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
Sau3AI	GATC	7 cut(s)	73, 103, 153, 183, 253, 261, 402
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	2 cut(s)	224, 270
SetI	ASST	7 cut(s)	56, 69, 88, 123, 130, 397, 410
SfaNI	GCATC	1 cut(s)	324
SinI	GGWCC	1 cut(s)	51
SsiI	CCGC	1 cut(s)	334
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	2 cut(s)	237, 283
TaqI	TCGA	7 cut(s)	76, 106, 156, 186, 252, 260, 387
TfiI	GAWTC	2 cut(s)	376, 389
TseFI	GTSAC	2 cut(s)	245, 283
Tsp45I	GTSAC	2 cut(s)	245, 283
TspGWI	ACGGA	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	51
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.