FvH4_6g09780

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004770
Physical Location & Seq
Reverse (-)
5835577 .. 5836930
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09780.t1

Sequence Viewer

Length: 681 bp
ATGGCGGTGGTTGTTTATTTGGACACCATATTAGTCCCTATTAGTCTCTTCCTTACGGTGGGTTACCATGCTTTTCTCTGGCGTAGCTTCAAGAACAAACCCTCTCATACTACAATTGGAATCAACATGTTGAAGAGGAGAGCATGGTTTCTAGAGATCAAAGGGGGTGATGAAGATAAGATGGGTATGTTGGCAGTCCAAAGCTTGAGAAACACTCTAATGGAAACCACACTCACAGCTTCCATAACGATTCTTATTGTGGTTTCATTAGCAGCTCTAGTCAACAACGCCTATAGCGCAACCCACATCTTCAGCAGTGCGATTTTCGGGTCACAGTCCACTAGGATATTTGCTCTAAAGTATGGCTCAGCAGCACTGGCCTTATCAATTAGCTTCCTCTGCAGTTCTATGGCAATCGCATTCTTGATTGATGCGAATTTCTTGATCAATGCCACCGGTGATCATGAGTTCACGTCTTCAGAACACACACGAAGCATACTTGAGAAAGGGTTTGTTTTGGCTCTTATTAGCAGCAGAATGTTGTGCATCACTTTTCCGGTGCTGTTATGGATGCTTGGGCCAATACCGGTATGTTTGTCGTCGATGGCATTGGTTTGGGGACTTTATGGGCTTGATTTTGCTGGAAAGCTAGCAAATAGCAATAAGCAAAGTCTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

227

Amino Acids

24.7

Weight (kDa)

9.05

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 10 - 214 1.6e-51 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 436
AcuI CTGAAG 2 cut(s) 295, 462
AfiI CCNNNNNNNGG 1 cut(s) 58
AflIII ACRYGT 1 cut(s) 126
AgeI ACCGGT 2 cut(s) 455, 586
AgsI TTSAA 2 cut(s) 91, 133
AjiI CACGTC 1 cut(s) 474
AluBI AGCT 6 cut(s) 87, 204, 239, 275, 393, 649
AluI AGCT 6 cut(s) 87, 204, 239, 275, 393, 649
Alw26I GTCTC 2 cut(s) 50, 677
AoxI GGCC 2 cut(s) 378, 578
ApeKI GCWGC 3 cut(s) 272, 371, 531
ApoI RAATTY 1 cut(s) 436
AsiGI ACCGGT 2 cut(s) 455, 586
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 578
AsuHPI GGTGA 2 cut(s) 179, 470
AsuNHI GCTAGC 1 cut(s) 649
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 3 cut(s) 284, 383, 543
BccI CCATC 2 cut(s) 175, 598
BclI TGATCA 2 cut(s) 444, 460
BcoDI GTCTC 2 cut(s) 50, 677
BfaI CTAG 4 cut(s) 152, 278, 342, 650
BfmI CTRYAG 2 cut(s) 292, 400
BisI GCNGC 3 cut(s) 273, 372, 532
BlpI GCTNAGC 1 cut(s) 367
BlsI GCNGC 3 cut(s) 274, 373, 533
BmgBI CACGTC 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 578
BmsI GCATC 3 cut(s) 421, 555, 561
BmtI GCTAGC 1 cut(s) 653
BpiI GAAGAC 1 cut(s) 468
BplI GAGNNNNNCTC 2 cut(s) 199, 231
Bpu1102I GCTNAGC 1 cut(s) 367
BpuEI CTTGAG 2 cut(s) 226, 521
BsaWI WCCGGW 3 cut(s) 455, 556, 586
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse118I RCCGGY 2 cut(s) 455, 586
Bse1I ACTGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 576
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 1 cut(s) 381
BseRI GAGGAG 1 cut(s) 151
BseXI GCAGC 3 cut(s) 284, 383, 543
BshFI GGCC 2 cut(s) 380, 580
BshTI ACCGGT 2 cut(s) 455, 586
BsiSI CCGG 3 cut(s) 456, 557, 587
BslFI GGGAC 2 cut(s) 20, 633
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 50, 677
BsmFI GGGAC 2 cut(s) 20, 633
BsmI GAATGC 1 cut(s) 419
BsnI GGCC 2 cut(s) 380, 580
Bsp143I GATC 3 cut(s) 156, 444, 460
Bsp1720I GCTNAGC 1 cut(s) 367
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 380, 580
BspCNI CTCAG 1 cut(s) 380
BspHI TCATGA 1 cut(s) 463
BspMAI CTGCAG 1 cut(s) 404
BspOI GCTAGC 1 cut(s) 653
BsrFI RCCGGY 2 cut(s) 455, 586
BsrI ACTGG 1 cut(s) 381
BssAI RCCGGY 2 cut(s) 455, 586
BssMI GATC 3 cut(s) 156, 444, 460
Bst4CI ACNGT 2 cut(s) 58, 336
Bst6I CTCTTC 2 cut(s) 53, 128
BstC8I GCNNGC 1 cut(s) 651
BstDEI CTNAG 1 cut(s) 367
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 1 cut(s) 576
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 3 cut(s) 159, 447, 463
BstMAI GTCTC 2 cut(s) 50, 677
BstMBI GATC 3 cut(s) 156, 444, 460
BstMWI GCNNNNNNNGC 3 cut(s) 296, 377, 399
BstNSI RCATGY 1 cut(s) 130
BstPI GGTNACC 1 cut(s) 62
BstSFI CTRYAG 2 cut(s) 292, 400
BstV1I GCAGC 3 cut(s) 284, 383, 543
BstV2I GAAGAC 1 cut(s) 468
BsuRI GGCC 2 cut(s) 380, 580
BtrI CACGTC 1 cut(s) 474
BtsCI GGATG 1 cut(s) 576
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 2 cut(s) 322, 374
Cac8I GCNNGC 1 cut(s) 651
CciI TCATGA 1 cut(s) 463
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 2 cut(s) 455, 586
Cfr13I GGNCC 1 cut(s) 578
CspAI ACCGGT 2 cut(s) 455, 586
CviAII CATG 4 cut(s) 68, 127, 144, 464
DdeI CTNAG 1 cut(s) 367
DpnI GATC 3 cut(s) 158, 446, 462
DpnII GATC 3 cut(s) 156, 444, 460
Eam1104I CTCTTC 2 cut(s) 53, 128
EarI CTCTTC 2 cut(s) 53, 128
Eco57I CTGAAG 2 cut(s) 295, 462
Eco91I GGTNACC 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 62
FaeI CATG 4 cut(s) 71, 130, 147, 467
FalI AAGNNNNNCTT 1 cut(s) 661
FaqI GGGAC 2 cut(s) 20, 633
FatI CATG 4 cut(s) 67, 126, 143, 463
FbaI TGATCA 2 cut(s) 444, 460
Fnu4HI GCNGC 3 cut(s) 273, 372, 532
FokI GGATG 1 cut(s) 583
Fsp4HI GCNGC 3 cut(s) 273, 372, 532
FspBI CTAG 4 cut(s) 152, 278, 342, 650
GlaI GCGC 1 cut(s) 298
GluI GCNGC 3 cut(s) 273, 372, 532
HaeIII GGCC 2 cut(s) 380, 580
HapII CCGG 3 cut(s) 456, 557, 587
HhaI GCGC 1 cut(s) 299
Hin1II CATG 4 cut(s) 71, 130, 147, 467
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 2 cut(s) 120, 250
HpaII CCGG 3 cut(s) 456, 557, 587
HphI GGTGA 2 cut(s) 179, 470
Hpy166II GTNNAC 3 cut(s) 283, 339, 471
Hpy188I TCNGA 1 cut(s) 481
Hpy188III TCNNGA 5 cut(s) 91, 152, 424, 442, 464
Hpy8I GTNNAC 3 cut(s) 283, 339, 471
Hpy99I CGWCG 1 cut(s) 604
HpyCH4III ACNGT 2 cut(s) 58, 336
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 2 cut(s) 402, 546
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 377, 399
HpyF3I CTNAG 1 cut(s) 367
HpySE526I ACGT 1 cut(s) 473
Hsp92II CATG 4 cut(s) 71, 130, 147, 467
HspAI GCGC 1 cut(s) 297
Ksp22I TGATCA 2 cut(s) 444, 460
Kzo9I GATC 3 cut(s) 156, 444, 460
LpnPI CCDG 6 cut(s) 64, 362, 469, 570, 600, 627
Lsp1109I GCAGC 3 cut(s) 284, 383, 543
LweI GCATC 3 cut(s) 421, 555, 561
MaeI CTAG 4 cut(s) 152, 278, 342, 650
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 2 cut(s) 62, 330
MalI GATC 3 cut(s) 158, 446, 462
MboI GATC 3 cut(s) 156, 444, 460
MboII GAAGA 5 cut(s) 40, 145, 185, 301, 468
MfeI CAATTG 1 cut(s) 114
MluCI AATT 3 cut(s) 114, 387, 436
MnlI CCTC 3 cut(s) 112, 129, 407
MseI TTAA 1 cut(s) 679
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 3 cut(s) 456, 557, 587
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 419
MwoI GCNNNNNNNGC 3 cut(s) 296, 377, 399
NdeII GATC 3 cut(s) 156, 444, 460
NheI GCTAGC 1 cut(s) 649
NlaIII CATG 4 cut(s) 71, 130, 147, 467
NmuCI GTSAC 1 cut(s) 330
NspI RCATGY 1 cut(s) 130
PagI TCATGA 1 cut(s) 463
PciI ACATGT 1 cut(s) 126
PctI GAATGC 1 cut(s) 419
PfeI GAWTC 2 cut(s) 120, 250
PinAI ACCGGT 2 cut(s) 455, 586
PkrI GCNGC 3 cut(s) 274, 373, 533
PscI ACATGT 1 cut(s) 126
PspEI GGTNACC 1 cut(s) 62
PspPI GGNCC 1 cut(s) 578
PstI CTGCAG 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 679
SatI GCNGC 3 cut(s) 273, 372, 532
Sau3AI GATC 3 cut(s) 156, 444, 460
Sau96I GGNCC 1 cut(s) 578
SetI ASST 7 cut(s) 89, 206, 241, 277, 395, 476, 651
SfaNI GCATC 3 cut(s) 421, 555, 561
SfcI CTRYAG 2 cut(s) 292, 400
SgrAI CRCCGGYG 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 205, 500
SmoI CTYRAG 2 cut(s) 205, 500
Sse9I AATT 3 cut(s) 114, 387, 436
SsiI CCGC 1 cut(s) 5
SspMI CTAG 4 cut(s) 152, 278, 342, 650
TaaI ACNGT 2 cut(s) 58, 336
TaiI ACGT 1 cut(s) 476
TaqI TCGA 1 cut(s) 602
TasI AATT 3 cut(s) 114, 387, 436
TfiI GAWTC 2 cut(s) 120, 250
Tru1I TTAA 1 cut(s) 679
Tru9I TTAA 1 cut(s) 679
TscAI CASTG 2 cut(s) 322, 381
TseFI GTSAC 1 cut(s) 330
TseI GCWGC 3 cut(s) 272, 371, 531
Tsp45I GTSAC 1 cut(s) 330
TspDTI ATGAA 2 cut(s) 186, 255
TspRI CASTG 2 cut(s) 322, 381
XapI RAATTY 1 cut(s) 436
XbaI TCTAGA 1 cut(s) 151
XceI RCATGY 1 cut(s) 130
XspI CTAG 4 cut(s) 152, 278, 342, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.