Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004770

Physical Location & Seq

Genomic Coordinates Reverse (-)

3277453 .. 3278366

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0042200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGATAGTCCATCTGATGCTAATATCCGAGCTCGATGTGAACCCGGCCCAACTGAAAATGCTACGTACTAAACTCAAGCACCTCCTCTTCGGACGTCGCTTTGTCAAGTATGATGTATCATCGCAGAAGTTGTTGGAAAAACATGGAATTAGGTGGAAGGGAGAAGTACCAAATGCTCCTGACAACGGCCACCGTGGCCGTGGCTGCGGACGTAGCGCAACTGGTGAAGCTTTAACTGACAGGCCTCCTTTACCAAAAGGACATGGTTATCTTTCTTTGGGAACCTGGGCGGATGCGCATGGTAATGCCTCTAAGATATACTCTAGTTGTTCTGCTCTCATGTATTGTCGTGTTTGTGGTAAGGAAGGAGACCACTGGCGTCGAAATTGTCCAAACCGGCATCGACCAGAACCAGAACCAACACCTGCTGTTCCGACCAATAAAAAAAAATCAAAACCAGTTTTCCAGACACAGAGAAAGAAAGAATCAAATTCCGCTGCAGGCACCAACAACAGCTCATATGAGACCAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

178

Amino Acids

19.94

Weight (kDa)

9.88

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43180
fragaria_vesca	FvH4_6g09780 FvH4_6g09790
malus_domestica	MD04G1175300.v1.1 MD04G1175400.v1.1
prunus_persica	Prupe.6G294700_v2.0.a1 Prupe.6G294800_v2.0.a1
pyrus_communis	pycom04g15460 pycom04g15470
rosa_chinensis	RchiOBHm_Chr3g0460371 RchiOBHm_Chr3g0460381
rosa_laevigata	RLG00000025016 RLG00000025017
rosa_multiflora	Rmu_sc0004267.1_g000015 Rmu_sc0004267.1_g000016
rosa_roxburghii	Rroxscaffold_6G00419540 Rroxscaffold_6G00419550
rosa_rugosa	Rorug03G0042100 Rorug03G0042200 Rorug03G0042300 Rorug03G0042400
rosa_samantha	Rh3AG100200 Rh3AG100300 Rh3BG104200 Rh3BG104300 Rh3CG105900 Rh3CG106000 Rh3DG105500 Rh3DG105600
rosa_wichuraiana	Rw3G008510 Rw3G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
AatII	GACGTC	1 cut(s)	97
Acc16I	TGCGCA	1 cut(s)	297
Acc36I	ACCTGC	1 cut(s)	433
AccB1I	GGYRCC	1 cut(s)	503
AciI	CCGC	3 cut(s)	207, 290, 495
AcoI	YGGCCR	2 cut(s)	187, 196
AcsI	RAATTY	1 cut(s)	490
AcyI	GRCGYC	2 cut(s)	94, 379
AfaI	GTAC	2 cut(s)	67, 168
AfiI	CCNNNNNNNGG	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	3 cut(s)	31, 230, 516
AluI	AGCT	3 cut(s)	31, 230, 516
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	2 cut(s)	363, 518
AoxI	GGCC	4 cut(s)	45, 187, 196, 242
ApeKI	GCWGC	2 cut(s)	204, 497
ApoI	RAATTY	1 cut(s)	490
AspLEI	GCGC	2 cut(s)	218, 298
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	503
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	191, 484
BccI	CCATC	1 cut(s)	18
BceAI	ACGGC	2 cut(s)	183, 202
BciT130I	CCWGG	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	363, 518
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	498
BfuAI	ACCTGC	1 cut(s)	433
BglI	GCCNNNNNGGC	1 cut(s)	195
BisI	GCNGC	2 cut(s)	205, 498
BlsI	GCNGC	2 cut(s)	206, 499
Bme1390I	CCNGG	2 cut(s)	44, 286
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	283, 505
BmrFI	CCNGG	2 cut(s)	44, 286
BmsI	GCATC	3 cut(s)	6, 283, 409
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	65
BsaHI	GRCGYC	2 cut(s)	94, 379
BsaI	GGTCTC	2 cut(s)	363, 518
BsaJI	CCNNGG	3 cut(s)	193, 199, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	3 cut(s)	226, 380, 458
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	3 cut(s)	193, 199, 285
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseNI	ACTGG	3 cut(s)	226, 380, 458
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	191, 484
BshFI	GGCC	4 cut(s)	47, 189, 198, 244
BshNI	GGYRCC	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	44, 397
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	363, 518
BsnI	GGCC	4 cut(s)	47, 189, 198, 244
Bso31I	GGTCTC	2 cut(s)	363, 518
Bsp1286I	GDGCHC	1 cut(s)	33
BspACI	CCGC	3 cut(s)	207, 290, 495
BspANI	GGCC	4 cut(s)	47, 189, 198, 244
BspLI	GGNNCC	2 cut(s)	283, 505
BspMAI	CTGCAG	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	503
BspTNI	GGTCTC	2 cut(s)	363, 518
BsrFI	RCCGGY	1 cut(s)	396
BsrI	ACTGG	3 cut(s)	226, 380, 458
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	3 cut(s)	193, 199, 285
BssNI	GRCGYC	2 cut(s)	94, 379
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	2 cut(s)	94, 379
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	2 cut(s)	193, 199
BstF5I	GGATG	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	218, 298
BstMAI	GTCTC	2 cut(s)	363, 518
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 204, 213
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	42, 284
BstSFI	CTRYAG	1 cut(s)	498
BstSNI	TACGTA	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	191, 484
BsuRI	GGCC	4 cut(s)	47, 189, 198, 244
BtgI	CCRYGG	2 cut(s)	193, 199
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	373
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	502
CfoI	GCGC	2 cut(s)	218, 298
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	66, 167
CviAII	CATG	4 cut(s)	143, 263, 299, 340
CviJI	RGCY	8 cut(s)	31, 47, 189, 198, 204, 230, 244, 516
CviKI_1	RGCY	8 cut(s)	31, 47, 189, 198, 204, 230, 244, 516
CviQI	GTAC	2 cut(s)	66, 167
DdeI	CTNAG	1 cut(s)	312
EaeI	YGGCCR	2 cut(s)	187, 196
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	31
Eco105I	TACGTA	1 cut(s)	65
Eco147I	AGGCCT	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	33
Eco31I	GGTCTC	2 cut(s)	363, 518
Eco53kI	GAGCTC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	4 cut(s)	146, 266, 302, 343
FaiI	YATR	8 cut(s)	111, 144, 264, 300, 319, 341, 520, 522
FatI	CATG	4 cut(s)	142, 262, 298, 339
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	2 cut(s)	205, 498
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	2 cut(s)	205, 498
FspAI	RTGCGCAY	1 cut(s)	297
FspBI	CTAG	1 cut(s)	324
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	2 cut(s)	217, 297
GluI	GCNGC	2 cut(s)	205, 498
HaeIII	GGCC	4 cut(s)	47, 189, 198, 244
HapII	CCGG	2 cut(s)	44, 397
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	2 cut(s)	218, 298
Hin1I	GRCGYC	2 cut(s)	94, 379
Hin1II	CATG	4 cut(s)	146, 266, 302, 343
Hin6I	GCGC	2 cut(s)	216, 296
HinP1I	GCGC	2 cut(s)	216, 296
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	1 cut(s)	485
HpaII	CCGG	2 cut(s)	44, 397
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	4 cut(s)	15, 28, 92, 435
Hpy188III	TCNNGA	2 cut(s)	179, 466
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	2 cut(s)	99, 384
HpyAV	CCTTC	2 cut(s)	151, 359
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	3 cut(s)	64, 94, 211
HpyCH4V	TGCA	1 cut(s)	500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 204, 213
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	3 cut(s)	64, 94, 211
Hsp92I	GRCGYC	2 cut(s)	94, 379
Hsp92II	CATG	4 cut(s)	146, 266, 302, 343
HspAI	GCGC	2 cut(s)	216, 296
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	2 cut(s)	191, 484
LweI	GCATC	3 cut(s)	6, 283, 409
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	3 cut(s)	64, 94, 211
MboII	GAAGA	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	3 cut(s)	147, 385, 490
MmeI	TCCRAC	2 cut(s)	114, 458
MnlI	CCTC	4 cut(s)	92, 95, 255, 319
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	2 cut(s)	44, 397
MspR9I	CCNGG	2 cut(s)	44, 286
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	3 cut(s)	195, 204, 213
NciI	CCSGG	1 cut(s)	44
NdeI	CATATG	1 cut(s)	520
NlaIII	CATG	4 cut(s)	146, 266, 302, 343
NlaIV	GGNNCC	2 cut(s)	283, 505
NsbI	TGCGCA	1 cut(s)	297
PaqCI	CACCTGC	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	485
PkrI	GCNGC	2 cut(s)	206, 499
Ppu21I	YACGTR	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	283, 505
PspPI	GGNCC	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	502
RsaI	GTAC	2 cut(s)	67, 168
RsaNI	GTAC	2 cut(s)	66, 167
RseI	CAYNNNNRTG	1 cut(s)	303
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	2 cut(s)	205, 498
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	44, 286
SduI	GDGCHC	1 cut(s)	33
SfaNI	GCATC	3 cut(s)	6, 283, 409
SfcI	CTRYAG	1 cut(s)	498
SfiI	GGCCNNNNNGGCC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SnaBI	TACGTA	1 cut(s)	65
Sse9I	AATT	3 cut(s)	147, 385, 490
SseBI	AGGCCT	1 cut(s)	244
SsiI	CCGC	3 cut(s)	207, 290, 495
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	33
StuI	AGGCCT	1 cut(s)	244
StyD4I	CCNGG	2 cut(s)	42, 284
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	3 cut(s)	67, 97, 214
TaqI	TCGA	3 cut(s)	33, 382, 403
TasI	AATT	3 cut(s)	147, 385, 490
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	1 cut(s)	380
TseI	GCWGC	2 cut(s)	204, 497
TspRI	CASTG	1 cut(s)	380
XapI	RAATTY	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XspI	CTAG	1 cut(s)	324
ZraI	GACGTC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.