Rh3BG104200

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0004770
Physical Location & Seq
Reverse (-)
8350936 .. 8352893
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG104200.1

Sequence Viewer

Length: 540 bp
ATGAATTTTGCCGTGCAGGGTGATGAAGATAAGATGGGTATGTTGGCTGTCCAAAGCTTGAGAAACACTCTAATGGGAACCACACTCACAGCTGTTATAACAATTCTTGTTGTAGTTTCATTAGCTGCTTTAATCAACAACGCCTATAGTGCAACCCACATCTTCAGCAGTGTGATATTCGGGTCACAATCCCCTAGGATATTTGCTCTGAAGTATGGCTCAGCAGCACTGGCATTGTCAATTAGCTTCCTCTGCAGTTCCATGGCAATCGCATTCTTGATTGATGCGAATTTCCTGATTAATGCCTCCGGTGATCATGAGTTCTCGTCCTCGTCTTCAGAACACACACAAAGCATATTTGAGAAAGGGTTTGTTTTGGCTCTTATTAGCAACAGAATGTTGTGCATCACTTTTCCGGTGCTGTTATGGATGCTTGGGCCGATACCGGCTTGTTTGTCGTCGATGGCATTGGTTTGGGGGCTTTATGGGCTTGATTTTGCTGGAAAGTTAGCAAAAAGCAATAAGCAAAGTATCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

179

Amino Acids

19.13

Weight (kDa)

6.81

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 10 - 167 9.8e-36 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
AcsI RAATTY 2 cut(s) 4, 289
AcuI CTGAAG 3 cut(s) 148, 230, 321
AluBI AGCT 4 cut(s) 57, 92, 125, 246
AluI AGCT 4 cut(s) 57, 92, 125, 246
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 2 cut(s) 125, 224
ApoI RAATTY 2 cut(s) 4, 289
AseI ATTAAT 1 cut(s) 300
AspA2I CCTAGG 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 32, 323
AvrII CCTAGG 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 327
BbvI GCAGC 2 cut(s) 112, 236
BccI CCATC 2 cut(s) 28, 457
BclI TGATCA 1 cut(s) 313
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 2 cut(s) 145, 253
BisI GCNGC 2 cut(s) 126, 225
BlnI CCTAGG 1 cut(s) 194
BlpI GCTNAGC 1 cut(s) 220
BlsI GCNGC 2 cut(s) 127, 226
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 79
BmsI GCATC 3 cut(s) 274, 414, 420
BpiI GAAGAC 1 cut(s) 327
BplI GAGNNNNNCTC 2 cut(s) 52, 84
Bpu1102I GCTNAGC 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 194, 261
BsaWI WCCGGW 2 cut(s) 308, 415
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 194, 261
BseGI GGATG 1 cut(s) 435
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 234
BseXI GCAGC 2 cut(s) 112, 236
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 439
BsiSI CCGG 3 cut(s) 309, 416, 446
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 439
Bsp143I GATC 1 cut(s) 313
Bsp1720I GCTNAGC 1 cut(s) 220
Bsp19I CCATGG 1 cut(s) 261
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 1 cut(s) 233
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 1 cut(s) 234
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 2 cut(s) 194, 261
BssMI GATC 1 cut(s) 313
BssT1I CCWWGG 2 cut(s) 194, 261
BstDEI CTNAG 1 cut(s) 220
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 435
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 4 cut(s) 149, 230, 252, 487
BstSFI CTRYAG 2 cut(s) 145, 253
BstV1I GCAGC 2 cut(s) 112, 236
BstV2I GAAGAC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 439
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 175, 227
CciI TCATGA 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 445
Cfr13I GGNCC 1 cut(s) 437
CviAII CATG 2 cut(s) 262, 317
DdeI CTNAG 1 cut(s) 220
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
Eco130I CCWWGG 2 cut(s) 194, 261
Eco57I CTGAAG 3 cut(s) 148, 230, 321
EcoT14I CCWWGG 2 cut(s) 194, 261
ErhI CCWWGG 2 cut(s) 194, 261
FaeI CATG 2 cut(s) 265, 320
FaiI YATR 9 cut(s) 41, 98, 147, 216, 263, 318, 356, 427, 486
FatI CATG 2 cut(s) 261, 316
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 126, 225
FokI GGATG 1 cut(s) 442
Fsp4HI GCNGC 2 cut(s) 126, 225
FspBI CTAG 1 cut(s) 195
GluI GCNGC 2 cut(s) 126, 225
HaeIII GGCC 1 cut(s) 439
HapII CCGG 3 cut(s) 309, 416, 446
Hin1II CATG 2 cut(s) 265, 320
HindIII AAGCTT 1 cut(s) 55
HpaII CCGG 3 cut(s) 309, 416, 446
HphI GGTGA 2 cut(s) 32, 323
Hpy188I TCNGA 2 cut(s) 210, 340
Hpy188III TCNNGA 3 cut(s) 277, 295, 317
Hpy99I CGWCG 1 cut(s) 463
HpyCH4V TGCA 4 cut(s) 16, 152, 255, 405
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 230, 252, 487
HpyF3I CTNAG 1 cut(s) 220
Hsp92II CATG 2 cut(s) 265, 320
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 1 cut(s) 313
LpnPI CCDG 7 cut(s) 2, 215, 308, 322, 429, 459, 486
Lsp1109I GCAGC 2 cut(s) 112, 236
LweI GCATC 3 cut(s) 274, 414, 420
MaeI CTAG 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 183
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 3 cut(s) 38, 154, 327
MluCI AATT 4 cut(s) 4, 102, 240, 289
MnlI CCTC 3 cut(s) 260, 316, 340
MseI TTAA 2 cut(s) 131, 300
MslI CAYNNNNRTG 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 3 cut(s) 309, 416, 446
Mva1269I GAATGC 1 cut(s) 272
MwoI GCNNNNNNNGC 4 cut(s) 149, 230, 252, 487
NcoI CCATGG 1 cut(s) 261
NdeII GATC 1 cut(s) 313
NlaIII CATG 2 cut(s) 265, 320
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 183
PagI TCATGA 1 cut(s) 316
PctI GAATGC 1 cut(s) 272
PkrI GCNGC 2 cut(s) 127, 226
PshBI ATTAAT 1 cut(s) 300
PsiI TTATAA 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 437
PstI CTGCAG 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 2 cut(s) 131, 300
SatI GCNGC 2 cut(s) 126, 225
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 437
SetI ASST 4 cut(s) 59, 94, 127, 248
SfaNI GCATC 3 cut(s) 274, 414, 420
SfcI CTRYAG 2 cut(s) 145, 253
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 4 cut(s) 4, 102, 240, 289
SspMI CTAG 1 cut(s) 195
StyI CCWWGG 2 cut(s) 194, 261
TaqI TCGA 1 cut(s) 461
TasI AATT 4 cut(s) 4, 102, 240, 289
Tru1I TTAA 2 cut(s) 131, 300
Tru9I TTAA 2 cut(s) 131, 300
TscAI CASTG 2 cut(s) 175, 234
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 2 cut(s) 125, 224
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 3 cut(s) 17, 39, 108
TspRI CASTG 2 cut(s) 175, 234
VspI ATTAAT 1 cut(s) 300
XapI RAATTY 2 cut(s) 4, 289
XmaJI CCTAGG 1 cut(s) 194
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.