FvH4_6g09790

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004770
Physical Location & Seq
Reverse (-)
5837598 .. 5838618
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09790.t1

Sequence Viewer

Length: 666 bp
ATGTATATGGAAATGAGTAGTTTTCATTTAGATACCATTCTTGTTCCCTCGAGCCTCTTCCTTCTAATAGCTTACCATGCATACTTATGGTGTATCTTCAAGACCAAACCCTCTCACACCACCATGGGAATTGAGTCGATCAGAAGAAGAATATGGTTTCTAGAGATTGTGCAGGGTGATGGTGGGAATGCTATGTCCGCAGTTCAAAACTTGAGAAACACTCAAATGGTGGCAATATTCACAGCTTCAACAGCAGTTGCCTTGAGCTTGGGTTTGGCAGCTCTGACGAACAATGCATACAATGCAAGCCACCTCATTGTCAAAACAGCATTTTTCGGTGTGCAGTCAGGAAGGATCTTTGCCCTAAAGTATGGCTTGGCCTCTTTCCTCTTGCTGTTCAGCTCTCTGTGTAGCTCCATGGCCACTGGATTTATGATCGATGCCATTTTTCTACTAAATACTTCTGCCGAGTTCTCGACTTCAGGAATAACACTACTCCTGTTTGAACGAGGTTACATGTTGGCTCAAATTGGCAACAGGTTGCTTTGTATCTCCTTTCCCTTGTGTTTATGGTTGTTTGGTCCAATGCCAGTGGCCTTGTCATCCCTCGCCCTAGTTTGGTGGCTTAAAGAGCTTGATTTTGTTGGCAAAATCACCCGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

222

Amino Acids

24.51

Weight (kDa)

9.16

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 13 - 215 1.8e-44 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 198
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 1 cut(s) 420
AcuI CTGAAG 1 cut(s) 465
AfiI CCNNNNNNNGG 1 cut(s) 618
AflIII ACRYGT 1 cut(s) 516
AgsI TTSAA 4 cut(s) 100, 206, 249, 506
AluBI AGCT 7 cut(s) 71, 245, 267, 281, 402, 414, 634
AluI AGCT 7 cut(s) 71, 245, 267, 281, 402, 414, 634
AlwI GGATC 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 49
AoxI GGCC 3 cut(s) 378, 420, 594
ApeKI GCWGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 581
AsuHPI GGTGA 2 cut(s) 188, 646
AvaI CYCGRG 1 cut(s) 49
AvaII GGWCC 1 cut(s) 581
BalI TGGCCA 1 cut(s) 422
BbvI GCAGC 1 cut(s) 290
BccI CCATC 1 cut(s) 173
BfaI CTAG 2 cut(s) 161, 614
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 581
BmeT110I CYCGRG 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 581
BmsI GCATC 1 cut(s) 430
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BpuEI CTTGAG 2 cut(s) 232, 283
Bsa29I ATCGAT 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 123, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 618
Bse1I ACTGG 2 cut(s) 430, 590
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 123, 417
BseGI GGATG 1 cut(s) 602
BseLI CCNNNNNNNGG 1 cut(s) 618
BseNI ACTGG 2 cut(s) 430, 590
BseXI GCAGC 1 cut(s) 290
BsgI GTGCAG 2 cut(s) 191, 362
BshFI GGCC 3 cut(s) 380, 422, 596
BshVI ATCGAT 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 618
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 3 cut(s) 380, 422, 596
BsoBI CYCGRG 1 cut(s) 49
Bsp143I GATC 3 cut(s) 138, 354, 435
Bsp19I CCATGG 2 cut(s) 123, 417
BspACI CCGC 1 cut(s) 198
BspANI GGCC 3 cut(s) 380, 422, 596
BspDI ATCGAT 1 cut(s) 438
BspPI GGATC 1 cut(s) 362
BsrI ACTGG 2 cut(s) 430, 590
BssECI CCNNGG 2 cut(s) 123, 417
BssMI GATC 3 cut(s) 138, 354, 435
BssT1I CCWWGG 2 cut(s) 123, 417
Bst6I CTCTTC 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 307
BstDSI CCRYGG 2 cut(s) 123, 417
BstF5I GGATG 1 cut(s) 602
BstKTI GATC 3 cut(s) 141, 357, 438
BstMBI GATC 3 cut(s) 138, 354, 435
BstMWI GCNNNNNNNGC 5 cut(s) 77, 197, 251, 302, 631
BstNSI RCATGY 1 cut(s) 520
BstV1I GCAGC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 3 cut(s) 380, 422, 596
BsuTUI ATCGAT 1 cut(s) 438
BtgI CCRYGG 2 cut(s) 123, 417
BtsCI GGATG 1 cut(s) 602
BtsIMutI CAGTG 2 cut(s) 423, 597
Cac8I GCNNGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 581
ClaI ATCGAT 1 cut(s) 438
CspCI CAANNNNNGTGG 2 cut(s) 573, 608
CviAII CATG 4 cut(s) 77, 124, 418, 517
DpnI GATC 3 cut(s) 140, 356, 437
DpnII GATC 3 cut(s) 138, 354, 435
EaeI YGGCCR 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 2 cut(s) 123, 417
Eco47I GGWCC 1 cut(s) 581
Eco57I CTGAAG 1 cut(s) 465
Eco88I CYCGRG 1 cut(s) 49
EcoT14I CCWWGG 2 cut(s) 123, 417
EcoT22I ATGCAT 2 cut(s) 82, 298
ErhI CCWWGG 2 cut(s) 123, 417
FaeI CATG 4 cut(s) 80, 127, 421, 520
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FatI CATG 4 cut(s) 76, 123, 417, 516
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 589
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 2 cut(s) 161, 614
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 3 cut(s) 380, 422, 596
Hin1II CATG 4 cut(s) 80, 127, 421, 520
HinfI GANTC 1 cut(s) 134
HphI GGTGA 2 cut(s) 188, 646
Hpy188I TCNGA 2 cut(s) 143, 285
Hpy188III TCNNGA 5 cut(s) 100, 161, 348, 475, 483
HpyAV CCTTC 2 cut(s) 71, 345
HpyCH4V TGCA 5 cut(s) 80, 172, 296, 305, 343
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 197, 251, 302, 631
Hsp92II CATG 4 cut(s) 80, 127, 421, 520
Kzo9I GATC 3 cut(s) 138, 354, 435
LmnI GCTCC 1 cut(s) 419
LpnPI CCDG 7 cut(s) 158, 333, 411, 468, 512, 523, 603
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 1 cut(s) 430
MaeI CTAG 2 cut(s) 161, 614
MaeIII GTNAC 1 cut(s) 512
MalI GATC 3 cut(s) 140, 356, 437
MboI GATC 3 cut(s) 138, 354, 435
MboII GAAGA 4 cut(s) 49, 88, 156, 159
MflI RGATCY 1 cut(s) 354
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 2 cut(s) 129, 528
MluNI TGGCCA 1 cut(s) 422
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 8 cut(s) 58, 65, 121, 323, 391, 398, 503, 617
Mox20I TGGCCA 1 cut(s) 422
Mph1103I ATGCAT 2 cut(s) 82, 298
MscI TGGCCA 1 cut(s) 422
MseI TTAA 1 cut(s) 627
MslI CAYNNNNRTG 3 cut(s) 85, 122, 224
Msp20I TGGCCA 1 cut(s) 422
Mva1269I GAATGC 1 cut(s) 193
MwoI GCNNNNNNNGC 5 cut(s) 77, 197, 251, 302, 631
NcoI CCATGG 2 cut(s) 123, 417
NdeII GATC 3 cut(s) 138, 354, 435
NlaIII CATG 4 cut(s) 80, 127, 421, 520
NmeAIII GCCGAG 1 cut(s) 493
NsiI ATGCAT 2 cut(s) 82, 298
NspI RCATGY 1 cut(s) 520
PaeR7I CTCGAG 1 cut(s) 49
PciI ACATGT 1 cut(s) 516
PctI GAATGC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PscI ACATGT 1 cut(s) 516
PspPI GGNCC 1 cut(s) 581
PspXI VCTCGAGB 1 cut(s) 49
PsrI GAACNNNNNNTAC 2 cut(s) 281, 313
PsuI RGATCY 1 cut(s) 354
RseI CAYNNNNRTG 3 cut(s) 85, 122, 224
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 3 cut(s) 138, 354, 435
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 1 cut(s) 143
SfaNI GCATC 1 cut(s) 430
Sfr274I CTCGAG 1 cut(s) 49
SinI GGWCC 1 cut(s) 581
SlaI CTCGAG 1 cut(s) 49
SmiMI CAYNNNNRTG 3 cut(s) 85, 122, 224
SmlI CTYRAG 3 cut(s) 49, 211, 262
SmoI CTYRAG 3 cut(s) 49, 211, 262
Sse9I AATT 2 cut(s) 129, 528
SsiI CCGC 1 cut(s) 198
SspI AATATT 1 cut(s) 237
SspMI CTAG 2 cut(s) 161, 614
StyI CCWWGG 2 cut(s) 123, 417
TaqI TCGA 4 cut(s) 50, 137, 438, 476
TasI AATT 2 cut(s) 129, 528
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 2 cut(s) 430, 597
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 14
TspRI CASTG 2 cut(s) 430, 597
VpaK11BI GGWCC 1 cut(s) 581
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 1 cut(s) 520
XhoI CTCGAG 1 cut(s) 49
XspI CTAG 2 cut(s) 161, 614
Zsp2I ATGCAT 2 cut(s) 82, 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.