Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004267.1

Orthogroup ID

OG0004770

Physical Location & Seq

Genomic Coordinates Forward (+)

73164 .. 74179

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004267.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgggaacttttactttagacactattcttgttcccttgagcctcttcgttctaatagcttaccatgcatatttatggtgtatcttcaagaccaaaccctctcacacaaccatcggaattgaatcagtcagaagaagaatatggtttctagagattatgcagggtgatggtcggaaggctatgttggcagtccaaaacttgagaaatactcaaatggtggcaataatcacagcttcaacagcaattgccttcagcttggctttggcagctctgacgaacaatgcttacaatgcaagccacctctttgttaaaacagcatttttcggcttgcagtcggggaggatctttgccctaaagtatggcttggcctattttgtcttgctgttcagctcattatgcagctccatggccactggatttatgatcgatgccatttttctagtaaatacttctcccgagttctcatcttcaggaataacactactcctatttgaacgaggttacatgttggctcaaattggcgaaaggttgctttgtatctcctttcctttgttgttgtggttgtttggtccagtgccagtggccttgtcatccctggccttggtttggtggcttaaagagcttgattttgttggcaaattcacccaaagtaacaggcaaagtctcagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

223

Amino Acids

24.83

Weight (kDa)

9.44

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43180
fragaria_vesca	FvH4_6g09780 FvH4_6g09790
malus_domestica	MD04G1175300.v1.1 MD04G1175400.v1.1
prunus_persica	Prupe.6G294700_v2.0.a1 Prupe.6G294800_v2.0.a1
pyrus_communis	pycom04g15460 pycom04g15470
rosa_chinensis	RchiOBHm_Chr3g0460371 RchiOBHm_Chr3g0460381
rosa_laevigata	RLG00000025016 RLG00000025017
rosa_multiflora	Rmu_sc0004267.1_g000015 Rmu_sc0004267.1_g000016
rosa_roxburghii	Rroxscaffold_6G00419540 Rroxscaffold_6G00419550
rosa_rugosa	Rorug03G0042100 Rorug03G0042200 Rorug03G0042300 Rorug03G0042400
rosa_samantha	Rh3AG100200 Rh3AG100300 Rh3BG104200 Rh3BG104300 Rh3CG105900 Rh3CG106000 Rh3DG105500 Rh3DG105600
rosa_wichuraiana	Rw3G008510 Rw3G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	638
AcuI	CTGAAG	2 cut(s)	235, 453
AfiI	CCNNNNNNNGG	2 cut(s)	601, 606
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	4 cut(s)	88, 122, 237, 494
AjnI	CCWGG	1 cut(s)	594
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	8 cut(s)	59, 233, 255, 269, 390, 402, 622, 669
AluI	AGCT	8 cut(s)	59, 233, 255, 269, 390, 402, 622, 669
Alw26I	GTCTC	1 cut(s)	668
AlwI	GGATC	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	4 cut(s)	366, 408, 582, 597
ApeKI	GCWGC	2 cut(s)	266, 399
ApoI	RAATTY	1 cut(s)	638
AspS9I	GGNCC	1 cut(s)	569
AsuHPI	GGTGA	2 cut(s)	176, 634
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	569
BalI	TGGCCA	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	278, 411
BccI	CCATC	2 cut(s)	119, 161
BciT130I	CCWGG	1 cut(s)	596
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	2 cut(s)	149, 440
BisI	GCNGC	2 cut(s)	267, 400
BlsI	GCNGC	2 cut(s)	268, 401
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	1 cut(s)	569
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	569
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	1 cut(s)	418
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BpuEI	CTTGAG	2 cut(s)	58, 220
Bsa29I	ATCGAT	1 cut(s)	426
BsaJI	CCNNGG	3 cut(s)	405, 594, 600
Bsc4I	CCNNNNNNNGG	2 cut(s)	601, 606
Bse1I	ACTGG	3 cut(s)	418, 572, 578
BseBI	CCWGG	1 cut(s)	596
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	405, 594, 600
BseGI	GGATG	1 cut(s)	590
BseLI	CCNNNNNNNGG	2 cut(s)	601, 606
BseNI	ACTGG	3 cut(s)	418, 572, 578
BseXI	GCAGC	2 cut(s)	278, 411
BshFI	GGCC	4 cut(s)	368, 410, 584, 599
BshVI	ATCGAT	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	455
BslI	CCNNNNNNNGG	2 cut(s)	601, 606
BsmAI	GTCTC	1 cut(s)	668
BsnI	GGCC	4 cut(s)	368, 410, 584, 599
BsoBI	CYCGRG	1 cut(s)	455
Bsp143I	GATC	2 cut(s)	342, 423
Bsp19I	CCATGG	1 cut(s)	405
BspANI	GGCC	4 cut(s)	368, 410, 584, 599
BspDI	ATCGAT	1 cut(s)	426
BspPI	GGATC	1 cut(s)	350
BsrI	ACTGG	3 cut(s)	418, 572, 578
BssECI	CCNNGG	3 cut(s)	405, 594, 600
BssMI	GATC	2 cut(s)	342, 423
BssT1I	CCWWGG	2 cut(s)	405, 600
Bst2UI	CCWGG	1 cut(s)	596
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	295, 329
BstDEI	CTNAG	1 cut(s)	665
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	590
BstKTI	GATC	2 cut(s)	345, 426
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	2 cut(s)	342, 423
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 185, 239, 266, 290, 396, 619
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	1 cut(s)	594
BstV1I	GCAGC	2 cut(s)	278, 411
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	4 cut(s)	368, 410, 584, 599
BsuTUI	ATCGAT	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	590
BtsIMutI	CAGTG	3 cut(s)	411, 579, 585
Cac8I	GCNNGC	2 cut(s)	295, 329
Cfr13I	GGNCC	1 cut(s)	569
ClaI	ATCGAT	1 cut(s)	426
CviAII	CATG	3 cut(s)	65, 406, 505
DdeI	CTNAG	1 cut(s)	665
DpnI	GATC	2 cut(s)	344, 425
DpnII	GATC	2 cut(s)	342, 423
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	405, 600
Eco47I	GGWCC	1 cut(s)	569
Eco57I	CTGAAG	2 cut(s)	235, 453
Eco88I	CYCGRG	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	2 cut(s)	405, 600
EcoT22I	ATGCAT	1 cut(s)	70
ErhI	CCWWGG	2 cut(s)	405, 600
FaeI	CATG	3 cut(s)	68, 409, 508
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	3 cut(s)	64, 405, 504
Fnu4HI	GCNGC	2 cut(s)	267, 400
FokI	GGATG	1 cut(s)	577
Fsp4HI	GCNGC	2 cut(s)	267, 400
FspBI	CTAG	2 cut(s)	149, 440
GluI	GCNGC	2 cut(s)	267, 400
HaeIII	GGCC	4 cut(s)	368, 410, 584, 599
Hin1II	CATG	3 cut(s)	68, 409, 508
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	2 cut(s)	176, 634
Hpy188I	TCNGA	4 cut(s)	116, 131, 174, 273
Hpy188III	TCNNGA	4 cut(s)	88, 149, 455, 471
HpyAV	CCTTC	2 cut(s)	169, 259
HpyCH4V	TGCA	5 cut(s)	68, 160, 293, 331, 399
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 185, 239, 266, 290, 396, 619
HpyF3I	CTNAG	1 cut(s)	665
Hsp92II	CATG	3 cut(s)	68, 409, 508
Kzo9I	GATC	2 cut(s)	342, 423
LmnI	GCTCC	1 cut(s)	407
LpnPI	CCDG	8 cut(s)	146, 399, 456, 581, 585, 591, 608, 640
Lsp1109I	GCAGC	2 cut(s)	278, 411
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	149, 440
MaeIII	GTNAC	2 cut(s)	500, 650
MalI	GATC	2 cut(s)	344, 425
MboI	GATC	2 cut(s)	342, 423
MboII	GAAGA	5 cut(s)	37, 76, 144, 147, 459
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	4 cut(s)	117, 243, 516, 638
MluNI	TGGCCA	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	5 cut(s)	53, 109, 311, 333, 491
Mox20I	TGGCCA	1 cut(s)	410
Mph1103I	ATGCAT	1 cut(s)	70
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	2 cut(s)	309, 615
MslI	CAYNNNNRTG	1 cut(s)	73
Msp20I	TGGCCA	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	669
MspR9I	CCNGG	1 cut(s)	596
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	7 cut(s)	65, 185, 239, 266, 290, 396, 619
NcoI	CCATGG	1 cut(s)	405
NdeII	GATC	2 cut(s)	342, 423
NlaIII	CATG	3 cut(s)	68, 409, 508
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	508
PciI	ACATGT	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	268, 401
PscI	ACATGT	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	569
PsrI	GAACNNNNNNTAC	2 cut(s)	269, 301
PsuI	RGATCY	1 cut(s)	342
PvuII	CAGCTG	1 cut(s)	669
RseI	CAYNNNNRTG	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	309, 615
SatI	GCNGC	2 cut(s)	267, 400
Sau3AI	GATC	2 cut(s)	342, 423
Sau96I	GGNCC	1 cut(s)	569
ScrFI	CCNGG	1 cut(s)	596
SfaNI	GCATC	1 cut(s)	418
SinI	GGWCC	1 cut(s)	569
SmiMI	CAYNNNNRTG	1 cut(s)	73
SmlI	CTYRAG	2 cut(s)	37, 199
SmoI	CTYRAG	2 cut(s)	37, 199
Sse9I	AATT	4 cut(s)	117, 243, 516, 638
SspMI	CTAG	2 cut(s)	149, 440
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	2 cut(s)	405, 600
TaqI	TCGA	1 cut(s)	426
TasI	AATT	4 cut(s)	117, 243, 516, 638
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	309, 615
Tru9I	TTAA	2 cut(s)	309, 615
TscAI	CASTG	3 cut(s)	418, 579, 585
TseI	GCWGC	2 cut(s)	266, 399
TspRI	CASTG	3 cut(s)	418, 579, 585
VpaK11BI	GGWCC	1 cut(s)	569
XapI	RAATTY	1 cut(s)	638
XbaI	TCTAGA	1 cut(s)	148
XceI	RCATGY	1 cut(s)	508
XspI	CTAG	2 cut(s)	149, 440
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.