Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004770

Physical Location & Seq

Genomic Coordinates Forward (+)

27019661 .. 27020605

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G294800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGAGTGGTTGTTTATCTAGACACCATTTTGGTCCCCTTGAGCCTCTTTGTCACAGTAGGCTACCATGCCTATCTCTGGCACAACTTCAAGAACAAACCCTCTCACACCACAATTGGGATCAACATGCTGAAAAGGAGAGCATGGTTTCTAGAGCTAAATGGGGGAGATGACAAGAAAGGCATGCTGGCAGTCCAAAGCTTGAGAAACACTCTGATGGGCACAACACTCACAGCCTCCATAGCAATTCTCATTGAAGTCTCATTGGCAGCTTTCATAAACAACAGCTATAGCGCAACCCACCTCTTCAGCCATGCATTTTTTGGGTCACAATCTACAATGATTTTTGCTCTGAAATATGGCTCAGCAGCATTGTCCTTGGCAGTGAGCTTCTTGTGCAGCTCCATGGCAATTGGGTTTTTGATTGATGCCAATTTCTTGATAAATGCATCTGGTGATCATGAGTTCACATCTTCTGGAAACATAAGAACCATATTTGAGAAAGGCTTCATTCTGGCTTTTGTGAGCAGCAGAATGCTCTGCATCACTTTTCTCATGCTGCTGTGGATGCTTGGTCCTGTCCCAGTTTGGTTGTCATCTCTTGCTCTGGTTTGGGGGCTTTATGGGCTTGATTTTGTTGGGAAGTTGTCAAAAGACAACAAGCAAAACCTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

226

Amino Acids

24.75

Weight (kDa)

9.12

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43180
fragaria_vesca	FvH4_6g09780 FvH4_6g09790
malus_domestica	MD04G1175300.v1.1 MD04G1175400.v1.1
prunus_persica	Prupe.6G294700_v2.0.a1 Prupe.6G294800_v2.0.a1
pyrus_communis	pycom04g15460 pycom04g15470
rosa_chinensis	RchiOBHm_Chr3g0460371 RchiOBHm_Chr3g0460381
rosa_laevigata	RLG00000025016 RLG00000025017
rosa_multiflora	Rmu_sc0004267.1_g000015 Rmu_sc0004267.1_g000016
rosa_roxburghii	Rroxscaffold_6G00419540 Rroxscaffold_6G00419550
rosa_rugosa	Rorug03G0042100 Rorug03G0042200 Rorug03G0042300 Rorug03G0042400
rosa_samantha	Rh3AG100200 Rh3AG100300 Rh3BG104200 Rh3BG104300 Rh3CG105900 Rh3CG106000 Rh3DG105500 Rh3DG105600
rosa_wichuraiana	Rw3G008510 Rw3G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	292
AfiI	CCNNNNNNNGG	2 cut(s)	78, 117
AgsI	TTSAA	2 cut(s)	91, 257
AluBI	AGCT	6 cut(s)	157, 201, 272, 288, 390, 402
AluI	AGCT	6 cut(s)	157, 201, 272, 288, 390, 402
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	1 cut(s)	128
ApeKI	GCWGC	5 cut(s)	269, 368, 399, 528, 559
Asp700I	GAANNNNTTC	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	2 cut(s)	34, 575
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	34, 575
BaeGI	GKGCMC	1 cut(s)	224
BbvI	GCAGC	5 cut(s)	281, 380, 411, 540, 546
BccI	CCATC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	2 cut(s)	20, 152
BfmI	CTRYAG	1 cut(s)	289
BisI	GCNGC	5 cut(s)	270, 369, 400, 529, 560
BlpI	GCTNAGC	1 cut(s)	364
BlsI	GCNGC	5 cut(s)	271, 370, 401, 530, 561
Bme18I	GGWCC	2 cut(s)	34, 575
BmgT120I	GGNCC	2 cut(s)	34, 575
BmiI	GGNNCC	1 cut(s)	36
BmrI	ACTGGG	1 cut(s)	578
BmsI	GCATC	4 cut(s)	418, 458, 552, 558
BmuI	ACTGGG	1 cut(s)	578
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
Bpu1102I	GCTNAGC	1 cut(s)	364
BpuEI	CTTGAG	2 cut(s)	61, 223
BsaJI	CCNNGG	2 cut(s)	378, 405
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 117
Bse1I	ACTGG	1 cut(s)	584
BseDI	CCNNGG	2 cut(s)	378, 405
BseGI	GGATG	1 cut(s)	573
BseLI	CCNNNNNNNGG	2 cut(s)	78, 117
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	584
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	5 cut(s)	281, 380, 411, 540, 546
BsgI	GTGCAG	1 cut(s)	418
BslFI	GGGAC	2 cut(s)	20, 566
BslI	CCNNNNNNNGG	2 cut(s)	78, 117
BsmAI	GTCTC	1 cut(s)	265
BsmFI	GGGAC	2 cut(s)	20, 566
BsmI	GAATGC	1 cut(s)	540
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	120, 457
Bsp1720I	GCTNAGC	1 cut(s)	364
Bsp19I	CCATGG	1 cut(s)	405
BspCNI	CTCAG	1 cut(s)	377
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	2 cut(s)	378, 405
BssMI	GATC	2 cut(s)	120, 457
BssT1I	CCWWGG	2 cut(s)	378, 405
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	185, 189
BstDEI	CTNAG	2 cut(s)	364, 671
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	573
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	2 cut(s)	123, 460
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	2 cut(s)	120, 457
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 396, 568, 625
BstNSI	RCATGY	2 cut(s)	130, 187
BstSFI	CTRYAG	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	5 cut(s)	281, 380, 411, 540, 546
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	573
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	185, 189
CciI	TCATGA	1 cut(s)	460
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	34, 575
CviAII	CATG	8 cut(s)	68, 127, 144, 184, 314, 406, 461, 556
DdeI	CTNAG	2 cut(s)	364, 671
DpnI	GATC	2 cut(s)	122, 459
DpnII	GATC	2 cut(s)	120, 457
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	2 cut(s)	378, 405
Eco47I	GGWCC	2 cut(s)	34, 575
Eco57I	CTGAAG	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	378, 405
EcoT22I	ATGCAT	2 cut(s)	319, 451
ErhI	CCWWGG	2 cut(s)	378, 405
FaeI	CATG	8 cut(s)	71, 130, 147, 187, 317, 409, 464, 559
FaqI	GGGAC	2 cut(s)	20, 566
FatI	CATG	8 cut(s)	67, 126, 143, 183, 313, 405, 460, 555
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	5 cut(s)	270, 369, 400, 529, 560
FokI	GGATG	1 cut(s)	580
Fsp4HI	GCNGC	5 cut(s)	270, 369, 400, 529, 560
FspBI	CTAG	2 cut(s)	20, 152
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	5 cut(s)	270, 369, 400, 529, 560
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	8 cut(s)	71, 130, 147, 187, 317, 409, 464, 559
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HindIII	AAGCTT	1 cut(s)	199
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	468
Hpy188I	TCNGA	2 cut(s)	216, 354
Hpy188III	TCNNGA	6 cut(s)	20, 91, 152, 439, 461, 477
Hpy8I	GTNNAC	1 cut(s)	468
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	317, 399, 449, 543
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 396, 568, 625
HpyF3I	CTNAG	2 cut(s)	364, 671
Hsp92II	CATG	8 cut(s)	71, 130, 147, 187, 317, 409, 464, 559
HspAI	GCGC	1 cut(s)	294
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	120, 457
LmnI	GCTCC	1 cut(s)	407
LpnPI	CCDG	8 cut(s)	64, 173, 438, 462, 500, 591, 593, 597
Lsp1109I	GCAGC	5 cut(s)	281, 380, 411, 540, 546
LweI	GCATC	4 cut(s)	418, 458, 552, 558
MaeI	CTAG	2 cut(s)	20, 152
MaeIII	GTNAC	2 cut(s)	52, 327
MalI	GATC	2 cut(s)	122, 459
MboI	GATC	2 cut(s)	120, 457
MboII	GAAGA	2 cut(s)	298, 465
MfeI	CAATTG	2 cut(s)	114, 411
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	4 cut(s)	114, 246, 411, 433
MnlI	CCTC	4 cut(s)	56, 112, 247, 314
Mph1103I	ATGCAT	2 cut(s)	319, 451
MroXI	GAANNNNTTC	1 cut(s)	506
MslI	CAYNNNNRTG	1 cut(s)	215
MunI	CAATTG	2 cut(s)	114, 411
Mva1269I	GAATGC	1 cut(s)	540
MwoI	GCNNNNNNNGC	4 cut(s)	242, 396, 568, 625
NcoI	CCATGG	1 cut(s)	405
NdeII	GATC	2 cut(s)	120, 457
NlaIII	CATG	8 cut(s)	71, 130, 147, 187, 317, 409, 464, 559
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	2 cut(s)	52, 327
NsiI	ATGCAT	2 cut(s)	319, 451
NspI	RCATGY	2 cut(s)	130, 187
PaeI	GCATGC	1 cut(s)	187
PagI	TCATGA	1 cut(s)	460
PctI	GAATGC	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	506
PkrI	GCNGC	5 cut(s)	271, 370, 401, 530, 561
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	34, 575
RseI	CAYNNNNRTG	1 cut(s)	215
SatI	GCNGC	5 cut(s)	270, 369, 400, 529, 560
Sau3AI	GATC	2 cut(s)	120, 457
Sau96I	GGNCC	2 cut(s)	34, 575
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	8 cut(s)	159, 203, 274, 290, 306, 392, 404, 672
SfaNI	GCATC	4 cut(s)	418, 458, 552, 558
SfcI	CTRYAG	1 cut(s)	289
SinI	GGWCC	2 cut(s)	34, 575
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	2 cut(s)	40, 202
SmoI	CTYRAG	2 cut(s)	40, 202
SphI	GCATGC	1 cut(s)	187
Sse9I	AATT	4 cut(s)	114, 246, 411, 433
SspMI	CTAG	2 cut(s)	20, 152
StyI	CCWWGG	2 cut(s)	378, 405
TaaI	ACNGT	1 cut(s)	58
TasI	AATT	4 cut(s)	114, 246, 411, 433
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	2 cut(s)	52, 327
TseI	GCWGC	5 cut(s)	269, 368, 399, 528, 559
Tsp45I	GTSAC	2 cut(s)	52, 327
TspDTI	ATGAA	2 cut(s)	265, 499
TspRI	CASTG	1 cut(s)	390
VpaK11BI	GGWCC	2 cut(s)	34, 575
XbaI	TCTAGA	2 cut(s)	19, 151
XceI	RCATGY	2 cut(s)	130, 187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	2 cut(s)	20, 152
Zsp2I	ATGCAT	2 cut(s)	319, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.