Rh3CG105900

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0004770
Physical Location & Seq
Reverse (-)
8360211 .. 8362041
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG105900.1

Sequence Viewer

Length: 507 bp
ATGGGTATGTTGGCTGTCCAAAGCTTGAGAAACACTCTAATGGGAGCCACACTCACAGCTGTTATAACAATTCTTGTTGTAGTTTCATTAGCTGCTCTAATCAACAACGCCTATAGTGCAACACACATCTTCAGCAGTGTGATATTCGGGTCACAATCCCCTAGGATATATGCTCTGAAGTATGGCTCAGCAGCACTGGCATTGTCAATTAGCTTCCTCTGCAGTTCTATGGCAATCGCATTCTTGATTGATGCGAATTTCCTGATTAATGCCTCCGGTGATCATGAGTTCTTGTCCTCGTCTTCAGAACACACACAAAGCATATTTGAGAAAGGGTTTGTTTTGTCTCTTATTAGCAACAGAATGTTGTGCATCACTTTTCCGGTGCTGTTATGGATGCTTGGGCCGATACCGGCCTGTTTGTCGTCGATGGCATTGGTTTGGGGGCTTTATGGGCTTGATTTTGCTGGAAAGTTAGCAAAAAGCAATAAGCAAAGTATCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

168

Amino Acids

17.92

Weight (kDa)

8.52

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 2 - 156 7.5e-33 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 65
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 3 cut(s) 115, 197, 288
AluBI AGCT 4 cut(s) 24, 59, 92, 213
AluI AGCT 4 cut(s) 24, 59, 92, 213
Alw26I GTCTC 1 cut(s) 351
AoxI GGCC 2 cut(s) 404, 414
ApeKI GCWGC 2 cut(s) 92, 191
ApoI RAATTY 1 cut(s) 256
AseI ATTAAT 1 cut(s) 267
AspA2I CCTAGG 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 404
AsuHPI GGTGA 1 cut(s) 290
AvrII CCTAGG 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 79, 203
BccI CCATC 1 cut(s) 424
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 351
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 2 cut(s) 112, 220
BisI GCNGC 2 cut(s) 93, 192
BlnI CCTAGG 1 cut(s) 161
BlpI GCTNAGC 1 cut(s) 187
BlsI GCNGC 2 cut(s) 94, 193
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 46
BmsI GCATC 3 cut(s) 241, 381, 387
BpiI GAAGAC 1 cut(s) 294
BplI GAGNNNNNCTC 4 cut(s) 19, 51, 36, 68
Bpu1102I GCTNAGC 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 161
BsaWI WCCGGW 2 cut(s) 275, 382
Bse118I RCCGGY 1 cut(s) 412
Bse1I ACTGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 201
BseXI GCAGC 2 cut(s) 79, 203
BshFI GGCC 2 cut(s) 406, 416
BsiSI CCGG 3 cut(s) 276, 383, 413
BsmAI GTCTC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 2 cut(s) 406, 416
Bsp143I GATC 1 cut(s) 280
Bsp1720I GCTNAGC 1 cut(s) 187
BspANI GGCC 2 cut(s) 406, 416
BspCNI CTCAG 1 cut(s) 200
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 46
BspMAI CTGCAG 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 412
BsrI ACTGG 1 cut(s) 201
BssAI RCCGGY 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 187
BstF5I GGATG 1 cut(s) 402
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 4 cut(s) 116, 197, 219, 454
BstSFI CTRYAG 2 cut(s) 112, 220
BstV1I GCAGC 2 cut(s) 79, 203
BstV2I GAAGAC 1 cut(s) 294
BsuRI GGCC 2 cut(s) 406, 416
BtsCI GGATG 1 cut(s) 402
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 142, 194
CciI TCATGA 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 412
Cfr13I GGNCC 1 cut(s) 404
CviAII CATG 1 cut(s) 284
DdeI CTNAG 1 cut(s) 187
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 161
Eco57I CTGAAG 3 cut(s) 115, 197, 288
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 1 cut(s) 287
FatI CATG 1 cut(s) 283
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 93, 192
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 2 cut(s) 93, 192
FspBI CTAG 1 cut(s) 162
GluI GCNGC 2 cut(s) 93, 192
HaeIII GGCC 2 cut(s) 406, 416
HapII CCGG 3 cut(s) 276, 383, 413
Hin1II CATG 1 cut(s) 287
HindIII AAGCTT 1 cut(s) 22
HpaII CCGG 3 cut(s) 276, 383, 413
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 177, 307
Hpy188III TCNNGA 3 cut(s) 244, 262, 284
Hpy99I CGWCG 1 cut(s) 430
HpyCH4V TGCA 3 cut(s) 119, 222, 372
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 197, 219, 454
HpyF3I CTNAG 1 cut(s) 187
Hsp92II CATG 1 cut(s) 287
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 7 cut(s) 182, 275, 289, 396, 426, 430, 453
Lsp1109I GCAGC 2 cut(s) 79, 203
LweI GCATC 3 cut(s) 241, 381, 387
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 150
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 2 cut(s) 121, 294
MluCI AATT 3 cut(s) 69, 207, 256
MnlI CCTC 3 cut(s) 227, 283, 307
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 3 cut(s) 276, 383, 413
Mva1269I GAATGC 1 cut(s) 239
MwoI GCNNNNNNNGC 4 cut(s) 116, 197, 219, 454
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 287
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 150
PagI TCATGA 1 cut(s) 283
PctI GAATGC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 94, 193
PshBI ATTAAT 1 cut(s) 267
PsiI TTATAA 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 404
PstI CTGCAG 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 2 cut(s) 93, 192
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 404
SetI ASST 4 cut(s) 26, 61, 94, 215
SfaNI GCATC 3 cut(s) 241, 381, 387
SfcI CTRYAG 2 cut(s) 112, 220
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 3 cut(s) 69, 207, 256
SspMI CTAG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 161
TaqI TCGA 1 cut(s) 428
TasI AATT 3 cut(s) 69, 207, 256
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 2 cut(s) 142, 201
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 2 cut(s) 92, 191
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 2 cut(s) 142, 201
VspI ATTAAT 1 cut(s) 267
XapI RAATTY 1 cut(s) 256
XmaJI CCTAGG 1 cut(s) 161
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.