Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004770

Physical Location & Seq

Genomic Coordinates Reverse (-)

3269665 .. 3270134

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0042100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGAGTAGAGCCCGCTATCCATGGCGAGTGTTGGCATTTGATGCGAACGGCGGCATACAAGTTTTGGAGCATTCTGGTGGAGCCGTCGAAGACCATGTGGTTCAGACTTGGGACGAATCGGATTCCCGAAGCCTAGGTGTGGTTGCCGCCTCTATGAATGACCGGTCACTAGGAGAAATGGCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

62

Amino Acids

6.76

Weight (kDa)

4.78

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43180
fragaria_vesca	FvH4_6g09780 FvH4_6g09790
malus_domestica	MD04G1175300.v1.1 MD04G1175400.v1.1
prunus_persica	Prupe.6G294700_v2.0.a1 Prupe.6G294800_v2.0.a1
pyrus_communis	pycom04g15460 pycom04g15470
rosa_chinensis	RchiOBHm_Chr3g0460371 RchiOBHm_Chr3g0460381
rosa_laevigata	RLG00000025016 RLG00000025017
rosa_multiflora	Rmu_sc0004267.1_g000015 Rmu_sc0004267.1_g000016
rosa_roxburghii	Rroxscaffold_6G00419540 Rroxscaffold_6G00419550
rosa_rugosa	Rorug03G0042100 Rorug03G0042200 Rorug03G0042300 Rorug03G0042400
rosa_samantha	Rh3AG100200 Rh3AG100300 Rh3BG104200 Rh3BG104300 Rh3CG105900 Rh3CG106000 Rh3DG105500 Rh3DG105600
rosa_wichuraiana	Rw3G008510 Rw3G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	13, 51, 147
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgeI	ACCGGT	1 cut(s)	162
AsiGI	ACCGGT	1 cut(s)	162
AspA2I	CCTAGG	1 cut(s)	133
AvrII	CCTAGG	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	96
BceAI	ACGGC	2 cut(s)	64, 68
BfaI	CTAG	2 cut(s)	134, 170
BisI	GCNGC	2 cut(s)	52, 147
BlnI	CCTAGG	1 cut(s)	133
BlsI	GCNGC	2 cut(s)	53, 148
BmiI	GGNNCC	1 cut(s)	82
BmsI	GCATC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	20, 133
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse118I	RCCGGY	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	20, 133
BseLI	CCNNNNNNNGG	1 cut(s)	139
BshTI	ACCGGT	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	20
BspACI	CCGC	3 cut(s)	13, 51, 147
BspLI	GGNNCC	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	20, 133
BssT1I	CCWWGG	2 cut(s)	20, 133
Bst4CI	ACNGT	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	13
BstDSI	CCRYGG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	162
CspAI	ACCGGT	1 cut(s)	162
CviAII	CATG	2 cut(s)	21, 95
CviJI	RGCY	3 cut(s)	11, 83, 132
CviKI_1	RGCY	3 cut(s)	11, 83, 132
Eco130I	CCWWGG	2 cut(s)	20, 133
Eco24I	GRGCYC	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	20, 133
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	20, 133
FaeI	CATG	2 cut(s)	24, 98
FaiI	YATR	4 cut(s)	22, 56, 96, 155
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	2 cut(s)	20, 94
FauI	CCCGC	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	52, 147
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	52, 147
FspBI	CTAG	2 cut(s)	134, 170
GluI	GCNGC	2 cut(s)	52, 147
HapII	CCGG	1 cut(s)	163
Hin1II	CATG	2 cut(s)	24, 98
HinfI	GANTC	2 cut(s)	116, 122
HpaII	CCGG	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	105, 121
Hpy188III	TCNNGA	1 cut(s)	126
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4III	ACNGT	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	24, 98
LmnI	GCTCC	2 cut(s)	67, 80
LpnPI	CCDG	2 cut(s)	60, 176
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	2 cut(s)	134, 170
MaeIII	GTNAC	1 cut(s)	165
MboII	GAAGA	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	13
MnlI	CCTC	1 cut(s)	160
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	20
NlaIII	CATG	2 cut(s)	24, 98
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	165
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	116, 122
PinAI	ACCGGT	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	53, 148
PspN4I	GGNNCC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	75
SatI	GCNGC	2 cut(s)	52, 147
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	75
SsiI	CCGC	3 cut(s)	13, 51, 147
SspMI	CTAG	2 cut(s)	134, 170
StyI	CCWWGG	2 cut(s)	20, 133
TaaI	ACNGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	87
TauI	GCSGC	2 cut(s)	54, 149
TfiI	GAWTC	2 cut(s)	116, 122
TseFI	GTSAC	1 cut(s)	165
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	170
XmaJI	CCTAGG	1 cut(s)	133
XspI	CTAG	2 cut(s)	134, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.