Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013697

Physical Location & Seq

Genomic Coordinates Reverse (-)

6788705 .. 6790298

Gene Structure 1594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11361.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGGTTCGAGTAAATGCTTAGATGCCTCTGCAGGGAACAAGGAACGGTTGCGGTGGACGCAGGAGCTACACGATATGTTCGTCGATGCAGTTACCAAGCTTGGCGGCCCTGATCGGGCAACACCAAAGGGTATTCTGAAGGCCATGGGAGTTTCTGGACTGACCATCTACCATATCAAAAGCCATTTGCAGAAGTACAGGATCTCAAAGTTTGTTCCAGAGACTACCAGTAAAGCAGGCAATCTTCAGAGAAAAAACATTTCAGAAATACTGCCCAACTTCGGTACAACATCGGCTGCTCAGCTCAACGAAGCGTTACATCTTATGCATATACAAGTACAAAGGAGATTGAGTGACCAACTTGAGGTGCACAAGAGCTTGAAGCAAAAATTTGAAGCTCAAGGAAGATTCCTGGATACTATTTCAGCAGATCGGAGCCGCAACGATAATCGCCTGATCATTACGAAACCTATCAAACCCATGTCTCGAAAAACATTGCCTTCTCTCTGTGAGGAATCAGAATTAAATGGTAAGGAGTTCGGGACGTCTGACTCGGACGCTGAGAAAACTGAGATTCAATCCTCTGGAGAAGAATTCCAAGCTTTGAAGAAGCAAAGGGTACAAAATCAAAACGAGGATAACATGGCGTGGAACTTCCATATCCTTGAGGATCAAACGACCAATATATCATCATATCCTGCAGTGTATGATCAGATCAGCTTTCCTTGGAACAACTTTGGAGCCTGCACGTCGCCTTTGGTCCCAAGCTTCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

259

Amino Acids

29.06

Weight (kDa)

8.67

Isoelectric Point (pI)

55.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 67	1.3e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	101 - 141	9.1e-13	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11361
malus_domestica	MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica	Prupe.6G278300_v2.0.a1
pyrus_communis	pycom04g13920 pycom12g15940
rosa_chinensis	RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata	RLG00000024820
rosa_multiflora	Rmu_sc0000766.1_g000026
rosa_roxburghii	Rroxscaffold_2G00124310
rosa_rugosa	Rorug03G0060900
rosa_samantha	Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana	Rw3G010060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	548
AciI	CCGC	3 cut(s)	52, 105, 439
AclWI	GGATC	2 cut(s)	209, 678
AcsI	RAATTY	2 cut(s)	389, 593
AcuI	CTGAAG	2 cut(s)	158, 230
AcyI	GRCGYC	1 cut(s)	545
AfaI	GTAC	4 cut(s)	197, 286, 339, 621
AfiI	CCNNNNNNNGG	4 cut(s)	33, 115, 281, 364
AgsI	TTSAA	4 cut(s)	382, 395, 578, 607
AjiI	CACGTC	1 cut(s)	750
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	8 cut(s)	67, 100, 304, 378, 398, 602, 720, 768
AluI	AGCT	8 cut(s)	67, 100, 304, 378, 398, 602, 720, 768
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	215, 489
Alw44I	GTGCAC	1 cut(s)	368
AlwI	GGATC	2 cut(s)	209, 678
AoxI	GGCC	2 cut(s)	106, 141
ApaLI	GTGCAC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	2 cut(s)	389, 593
AspS9I	GGNCC	2 cut(s)	107, 760
AvaII	GGWCC	1 cut(s)	760
BaeGI	GKGCMC	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	413
BciVI	GTATCC	1 cut(s)	409
BclI	TGATCA	2 cut(s)	456, 709
BcoDI	GTCTC	2 cut(s)	215, 489
BfmI	CTRYAG	2 cut(s)	30, 699
BfuI	GTATCC	1 cut(s)	409
BisI	GCNGC	3 cut(s)	106, 297, 439
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	3 cut(s)	107, 298, 440
Bme1390I	CCNGG	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	760
BmgBI	CACGTC	1 cut(s)	750
BmgT120I	GGNCC	2 cut(s)	107, 760
BmiI	GGNNCC	3 cut(s)	437, 742, 762
BmrFI	CCNGG	1 cut(s)	413
BmsI	GCATC	2 cut(s)	13, 76
BpmI	CTGGAG	1 cut(s)	606
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	3 cut(s)	383, 384, 686
BsaHI	GRCGYC	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	144, 725
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bsc4I	CCNNNNNNNGG	4 cut(s)	33, 115, 281, 364
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	494
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	2 cut(s)	144, 725
BseLI	CCNNNNNNNGG	4 cut(s)	33, 115, 281, 364
BseMI	GCAATG	1 cut(s)	494
BseMII	CTCAG	3 cut(s)	314, 552, 561
BseNI	ACTGG	1 cut(s)	228
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	283
BsgI	GTGCAG	1 cut(s)	730
BshFI	GGCC	2 cut(s)	108, 143
BsiHKAI	GWGCWC	1 cut(s)	372
BslFI	GGGAC	2 cut(s)	556, 746
BslI	CCNNNNNNNGG	4 cut(s)	33, 115, 281, 364
BsmAI	GTCTC	2 cut(s)	215, 489
BsmFI	GGGAC	2 cut(s)	556, 746
BsnI	GGCC	2 cut(s)	108, 143
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	7 cut(s)	112, 201, 430, 456, 670, 709, 714
Bsp1720I	GCTNAGC	1 cut(s)	300
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	3 cut(s)	52, 105, 439
BspANI	GGCC	2 cut(s)	108, 143
BspCNI	CTCAG	3 cut(s)	313, 553, 562
BspLI	GGNNCC	3 cut(s)	437, 742, 762
BspMAI	CTGCAG	2 cut(s)	34, 703
BspPI	GGATC	2 cut(s)	209, 678
BsrDI	GCAATG	1 cut(s)	494
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	2 cut(s)	144, 725
BssMI	GATC	7 cut(s)	112, 201, 430, 456, 670, 709, 714
BssNI	GRCGYC	1 cut(s)	545
BssT1I	CCWWGG	2 cut(s)	144, 725
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	238, 745
BstDEI	CTNAG	4 cut(s)	19, 300, 561, 570
BstDSI	CCRYGG	1 cut(s)	144
BstKTI	GATC	7 cut(s)	115, 204, 433, 459, 673, 712, 717
BstMAI	GTCTC	2 cut(s)	215, 489
BstMBI	GATC	7 cut(s)	112, 201, 430, 456, 670, 709, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	411
BstSFI	CTRYAG	2 cut(s)	30, 699
BstSLI	GKGCMC	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	2 cut(s)	108, 143
BtgI	CCRYGG	1 cut(s)	144
BtrI	CACGTC	1 cut(s)	750
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	1 cut(s)	708
Cac8I	GCNNGC	2 cut(s)	238, 745
Cfr13I	GGNCC	2 cut(s)	107, 760
CseI	GACGC	2 cut(s)	67, 566
Csp6I	GTAC	4 cut(s)	196, 285, 338, 620
CviAII	CATG	3 cut(s)	145, 481, 643
CviQI	GTAC	4 cut(s)	196, 285, 338, 620
DdeI	CTNAG	4 cut(s)	19, 300, 561, 570
DpnI	GATC	7 cut(s)	114, 203, 432, 458, 672, 711, 716
DpnII	GATC	7 cut(s)	112, 201, 430, 456, 670, 709, 714
Eco130I	CCWWGG	2 cut(s)	144, 725
Eco47I	GGWCC	1 cut(s)	760
Eco57I	CTGAAG	2 cut(s)	158, 230
EcoRI	GAATTC	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	411
EcoT14I	CCWWGG	2 cut(s)	144, 725
EcoT22I	ATGCAT	1 cut(s)	330
ErhI	CCWWGG	2 cut(s)	144, 725
FaeI	CATG	3 cut(s)	148, 484, 646
FaqI	GGGAC	2 cut(s)	556, 746
FatI	CATG	3 cut(s)	144, 480, 642
FbaI	TGATCA	2 cut(s)	456, 709
Fnu4HI	GCNGC	3 cut(s)	106, 297, 439
Fsp4HI	GCNGC	3 cut(s)	106, 297, 439
GluI	GCNGC	3 cut(s)	106, 297, 439
GsuI	CTGGAG	1 cut(s)	606
HaeIII	GGCC	2 cut(s)	108, 143
HgaI	GACGC	2 cut(s)	67, 566
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	3 cut(s)	148, 484, 646
HindIII	AAGCTT	3 cut(s)	98, 600, 766
HinfI	GANTC	4 cut(s)	408, 515, 551, 574
Hpy166II	GTNNAC	2 cut(s)	57, 370
Hpy188I	TCNGA	8 cut(s)	138, 249, 265, 435, 520, 550, 556, 714
Hpy188III	TCNNGA	5 cut(s)	156, 218, 486, 541, 585
Hpy8I	GTNNAC	2 cut(s)	57, 370
Hpy99I	CGWCG	2 cut(s)	86, 754
HpyAV	CCTTC	2 cut(s)	133, 510
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	2 cut(s)	545, 749
HpyCH4V	TGCA	7 cut(s)	32, 89, 190, 328, 370, 701, 747
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	4 cut(s)	19, 300, 561, 570
HpySE526I	ACGT	2 cut(s)	545, 749
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	3 cut(s)	148, 484, 646
Ksp22I	TGATCA	2 cut(s)	456, 709
Kzo9I	GATC	7 cut(s)	112, 201, 430, 456, 670, 709, 714
LmnI	GCTCC	3 cut(s)	64, 435, 740
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	2 cut(s)	13, 76
MaeII	ACGT	2 cut(s)	545, 749
MaeIII	GTNAC	3 cut(s)	91, 315, 353
MalI	GATC	7 cut(s)	114, 203, 432, 458, 672, 711, 716
MboI	GATC	7 cut(s)	112, 201, 430, 456, 670, 709, 714
MboII	GAAGA	4 cut(s)	236, 417, 602, 619
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	3 cut(s)	389, 521, 593
MlyI	GAGTC	1 cut(s)	545
MnlI	CCTC	6 cut(s)	37, 358, 505, 592, 628, 661
Mph1103I	ATGCAT	1 cut(s)	330
MseI	TTAA	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	1 cut(s)	58
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	7 cut(s)	112, 201, 430, 456, 670, 709, 714
NlaIII	CATG	3 cut(s)	148, 484, 646
NlaIV	GGNNCC	3 cut(s)	437, 742, 762
NmuCI	GTSAC	1 cut(s)	353
NsiI	ATGCAT	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	3 cut(s)	408, 515, 574
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	3 cut(s)	107, 298, 440
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	3 cut(s)	437, 742, 762
PspPI	GGNCC	2 cut(s)	107, 760
PstI	CTGCAG	2 cut(s)	34, 703
PsuI	RGATCY	1 cut(s)	201
RsaI	GTAC	4 cut(s)	197, 286, 339, 621
RsaNI	GTAC	4 cut(s)	196, 285, 338, 620
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	3 cut(s)	106, 297, 439
Sau3AI	GATC	7 cut(s)	112, 201, 430, 456, 670, 709, 714
Sau96I	GGNCC	2 cut(s)	107, 760
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	372
SfaNI	GCATC	2 cut(s)	13, 76
SfcI	CTRYAG	2 cut(s)	30, 699
SinI	GGWCC	1 cut(s)	760
SmlI	CTYRAG	3 cut(s)	362, 399, 665
SmoI	CTYRAG	3 cut(s)	362, 399, 665
Sse9I	AATT	3 cut(s)	389, 521, 593
SsiI	CCGC	3 cut(s)	52, 105, 439
StyD4I	CCNGG	1 cut(s)	411
StyI	CCWWGG	2 cut(s)	144, 725
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	2 cut(s)	548, 752
TaqI	TCGA	3 cut(s)	8, 84, 487
TasI	AATT	3 cut(s)	389, 521, 593
TatI	WGTACW	2 cut(s)	195, 337
TauI	GCSGC	2 cut(s)	108, 441
TfiI	GAWTC	3 cut(s)	408, 515, 574
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	1 cut(s)	708
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	353
TspRI	CASTG	1 cut(s)	708
VneI	GTGCAC	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	760
XapI	RAATTY	2 cut(s)	389, 593
ZraI	GACGTC	1 cut(s)	546
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.