Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000766.1

Orthogroup ID

OG0013697

Physical Location & Seq

Genomic Coordinates Reverse (-)

161881 .. 163864

Gene Structure 1984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000766.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgggttcgacaaaatgcttagatgcctctgcagggaacaaggaacggttgcgttggacgcaggagctacacgatatgttcgttgaggcagttaccaagcttggtggccctgatagggcaacaccaaagggtattctgaaggctatgggagtttctggactgaccatctaccatatcaaaagccatttgcaggtgcacaagagcttgaagcaaaaatttgaagcccagggaaggttccttgatacaatttcagcagatcggagtcgcaatgataaccgcccgacctttacgaaacctatcaaacccatatctagaaaatcgctgccttccctctgtgaggaatccgaatcaaatgctaaggacttcgggacgtctgactcggacgctgagaagaccgagattcaatcctctggagaagaattccaagctttgaagaagcaaagggtacataatcaaaacgacgacaacatggcatggaattttcctatcattgaggatcaaacggccaatatatcatcatatcctgcagtgtatgatcagatcagctttccttggaactttggagcctgcacatcgcctttagtccccagtttcctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

199

Amino Acids

22.24

Weight (kDa)

6.96

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11361
malus_domestica	MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica	Prupe.6G278300_v2.0.a1
pyrus_communis	pycom04g13920 pycom12g15940
rosa_chinensis	RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata	RLG00000024820
rosa_multiflora	Rmu_sc0000766.1_g000026
rosa_roxburghii	Rroxscaffold_2G00124310
rosa_rugosa	Rorug03G0060900
rosa_samantha	Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana	Rw3G010060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	181
AatII	GACGTC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	181
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	1 cut(s)	504
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	3 cut(s)	215, 419, 478
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	371
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	5 cut(s)	33, 115, 190, 231, 337
AgsI	TTSAA	4 cut(s)	208, 221, 404, 433
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	5 cut(s)	67, 100, 204, 428, 546
AluI	AGCT	5 cut(s)	67, 100, 204, 428, 546
Alw21I	GWGCWC	1 cut(s)	198
Alw44I	GTGCAC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	504
AoxI	GGCC	2 cut(s)	106, 504
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	3 cut(s)	215, 419, 478
AspS9I	GGNCC	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	519
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	1 cut(s)	535
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	2 cut(s)	30, 525
BfuAI	ACCTGC	1 cut(s)	181
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	236, 565
BmrFI	CCNGG	1 cut(s)	227
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	225, 226, 551
Bsc4I	CCNNNNNNNGG	5 cut(s)	33, 115, 190, 231, 337
Bse1I	ACTGG	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	3 cut(s)	225, 226, 551
BseLI	CCNNNNNNNGG	5 cut(s)	33, 115, 190, 231, 337
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	588
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	553
BshFI	GGCC	2 cut(s)	108, 506
BsiHKAI	GWGCWC	1 cut(s)	198
BslFI	GGGAC	2 cut(s)	382, 569
BslI	CCNNNNNNNGG	5 cut(s)	33, 115, 190, 231, 337
BsmFI	GGGAC	2 cut(s)	382, 569
BsnI	GGCC	2 cut(s)	108, 506
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	4 cut(s)	256, 496, 535, 540
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	2 cut(s)	108, 506
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	236, 565
BspMAI	CTGCAG	2 cut(s)	34, 529
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	588
BssECI	CCNNGG	3 cut(s)	225, 226, 551
BssMI	GATC	4 cut(s)	256, 496, 535, 540
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	551
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	3 cut(s)	19, 357, 387
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstKTI	GATC	4 cut(s)	259, 499, 538, 543
BstMBI	GATC	4 cut(s)	256, 496, 535, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	2 cut(s)	30, 525
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	108, 506
BtgZI	GCGATG	1 cut(s)	558
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
BveI	ACCTGC	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	568
Cfr13I	GGNCC	1 cut(s)	107
CseI	GACGC	2 cut(s)	67, 392
Csp6I	GTAC	1 cut(s)	446
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	2 cut(s)	469, 474
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	3 cut(s)	19, 357, 387
DpnI	GATC	4 cut(s)	258, 498, 537, 542
DpnII	GATC	4 cut(s)	256, 496, 535, 540
EaeI	YGGCCR	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	551
FaeI	CATG	2 cut(s)	472, 477
FaqI	GGGAC	2 cut(s)	382, 569
FatI	CATG	2 cut(s)	468, 473
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	108, 506
HgaI	GACGC	2 cut(s)	67, 392
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	2 cut(s)	472, 477
HindIII	AAGCTT	2 cut(s)	98, 426
HinfI	GANTC	5 cut(s)	262, 341, 347, 377, 400
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	6 cut(s)	138, 261, 346, 376, 382, 540
Hpy188III	TCNNGA	4 cut(s)	156, 312, 367, 411
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	3 cut(s)	133, 225, 336
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	5 cut(s)	32, 190, 196, 527, 570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	3 cut(s)	19, 357, 387
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	2 cut(s)	472, 477
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	256, 496, 535, 540
LmnI	GCTCC	2 cut(s)	64, 563
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	4 cut(s)	258, 498, 537, 542
MboI	GATC	4 cut(s)	256, 496, 535, 540
MboII	GAAGA	3 cut(s)	403, 428, 445
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	4 cut(s)	215, 246, 419, 478
MlyI	GAGTC	2 cut(s)	271, 371
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	6 cut(s)	37, 79, 331, 341, 418, 487
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	4 cut(s)	256, 496, 535, 540
NlaIII	CATG	2 cut(s)	472, 477
NlaIV	GGNNCC	2 cut(s)	236, 565
PaqCI	CACCTGC	1 cut(s)	181
PasI	CCCWGGG	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	3 cut(s)	341, 347, 400
PkrI	GCNGC	1 cut(s)	324
PleI	GAGTC	2 cut(s)	270, 371
PpsI	GAGTC	2 cut(s)	270, 371
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	236, 565
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	2 cut(s)	34, 529
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	4 cut(s)	256, 496, 535, 540
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	2 cut(s)	271, 371
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	2 cut(s)	30, 525
Sse9I	AATT	4 cut(s)	215, 246, 419, 478
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	551
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	1 cut(s)	8
TaqII	GACCGA	1 cut(s)	410
TasI	AATT	4 cut(s)	215, 246, 419, 478
TfiI	GAWTC	3 cut(s)	341, 347, 400
TscAI	CASTG	1 cut(s)	534
TseI	GCWGC	1 cut(s)	322
TspRI	CASTG	1 cut(s)	534
VneI	GTGCAC	1 cut(s)	194
XagI	CCTNNNNNAGG	1 cut(s)	335
XapI	RAATTY	3 cut(s)	215, 419, 478
XbaI	TCTAGA	1 cut(s)	311
XspI	CTAG	1 cut(s)	312
ZraI	GACGTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.