MYB-CC type transfactor, LHEQLE motif
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g11361 |
| malus_domestica | MD04G1154300.v1.1 MD12G1167700.v1.1 |
| prunus_persica | Prupe.6G278300_v2.0.a1 |
| pyrus_communis | pycom04g13920 pycom12g15940 |
| rosa_chinensis | RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991 |
| rosa_laevigata | RLG00000024820 |
| rosa_multiflora | Rmu_sc0000766.1_g000026 |
| rosa_roxburghii | Rroxscaffold_2G00124310 |
| rosa_rugosa | Rorug03G0060900 |
| rosa_samantha | Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800 |
| rosa_wichuraiana | Rw3G010060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 548 |
| AciI | CCGC | 1 cut(s) | 451 |
| AclWI | GGATC | 2 cut(s) | 209, 669 |
| AcoI | YGGCCR | 1 cut(s) | 669 |
| AcsI | RAATTY | 4 cut(s) | 209, 389, 584, 643 |
| AcuI | CTGAAG | 2 cut(s) | 158, 230 |
| AcyI | GRCGYC | 1 cut(s) | 545 |
| AfaI | GTAC | 3 cut(s) | 197, 339, 612 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 33, 115, 281, 405 |
| AgsI | TTSAA | 4 cut(s) | 382, 395, 569, 598 |
| AjnI | CCWGG | 1 cut(s) | 399 |
| AluBI | AGCT | 5 cut(s) | 67, 100, 304, 378, 593 |
| AluI | AGCT | 5 cut(s) | 67, 100, 304, 378, 593 |
| Alw21I | GWGCWC | 1 cut(s) | 372 |
| Alw26I | GTCTC | 1 cut(s) | 215 |
| Alw44I | GTGCAC | 1 cut(s) | 368 |
| AlwI | GGATC | 2 cut(s) | 209, 669 |
| AoxI | GGCC | 2 cut(s) | 106, 669 |
| ApaLI | GTGCAC | 1 cut(s) | 368 |
| ApeKI | GCWGC | 2 cut(s) | 296, 496 |
| ApoI | RAATTY | 4 cut(s) | 209, 389, 584, 643 |
| AspS9I | GGNCC | 1 cut(s) | 107 |
| BaeGI | GKGCMC | 1 cut(s) | 372 |
| BbsI | GAAGAC | 1 cut(s) | 563 |
| Bbv12I | GWGCWC | 1 cut(s) | 372 |
| BbvI | GCAGC | 2 cut(s) | 283, 483 |
| BccI | CCATC | 1 cut(s) | 173 |
| BceAI | ACGGC | 1 cut(s) | 684 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 509, 543 |
| BciT130I | CCWGG | 1 cut(s) | 401 |
| BclI | TGATCA | 2 cut(s) | 355, 700 |
| BcoDI | GTCTC | 1 cut(s) | 215 |
| BfaI | CTAG | 1 cut(s) | 486 |
| BfmI | CTRYAG | 2 cut(s) | 30, 690 |
| BisI | GCNGC | 2 cut(s) | 297, 497 |
| BlpI | GCTNAGC | 1 cut(s) | 300 |
| BlsI | GCNGC | 2 cut(s) | 298, 498 |
| Bme1390I | CCNGG | 1 cut(s) | 401 |
| BmgT120I | GGNCC | 1 cut(s) | 107 |
| BmiI | GGNNCC | 3 cut(s) | 109, 410, 730 |
| BmrFI | CCNGG | 1 cut(s) | 401 |
| BmrI | ACTGGG | 1 cut(s) | 747 |
| BmsI | GCATC | 1 cut(s) | 13 |
| BmuI | ACTGGG | 1 cut(s) | 747 |
| BpiI | GAAGAC | 1 cut(s) | 563 |
| BpmI | CTGGAG | 1 cut(s) | 597 |
| Bpu10I | CCTNAGC | 1 cut(s) | 531 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 300 |
| BpuEI | CTTGAG | 1 cut(s) | 383 |
| BsaHI | GRCGYC | 1 cut(s) | 545 |
| BsaJI | CCNNGG | 3 cut(s) | 399, 400, 716 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 337, 367 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 33, 115, 281, 405 |
| Bse1I | ACTGG | 2 cut(s) | 228, 753 |
| Bse3DI | GCAATG | 1 cut(s) | 448 |
| BseBI | CCWGG | 1 cut(s) | 401 |
| BseDI | CCNNGG | 3 cut(s) | 399, 400, 716 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 33, 115, 281, 405 |
| BseMI | GCAATG | 1 cut(s) | 448 |
| BseMII | CTCAG | 2 cut(s) | 314, 543 |
| BseNI | ACTGG | 2 cut(s) | 228, 753 |
| BseSI | GKGCMC | 1 cut(s) | 372 |
| BseXI | GCAGC | 2 cut(s) | 283, 483 |
| BsgI | GTGCAG | 1 cut(s) | 718 |
| BshFI | GGCC | 2 cut(s) | 108, 671 |
| BsiHKAI | GWGCWC | 1 cut(s) | 372 |
| BslFI | GGGAC | 2 cut(s) | 556, 734 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 33, 115, 281, 405 |
| BsmAI | GTCTC | 1 cut(s) | 215 |
| BsmFI | GGGAC | 2 cut(s) | 556, 734 |
| BsnI | GGCC | 2 cut(s) | 108, 671 |
| Bsp1286I | GDGCHC | 1 cut(s) | 372 |
| Bsp143I | GATC | 6 cut(s) | 201, 355, 430, 661, 700, 705 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 300 |
| BspACI | CCGC | 1 cut(s) | 451 |
| BspANI | GGCC | 2 cut(s) | 108, 671 |
| BspCNI | CTCAG | 2 cut(s) | 313, 544 |
| BspLI | GGNNCC | 3 cut(s) | 109, 410, 730 |
| BspMAI | CTGCAG | 2 cut(s) | 34, 694 |
| BspPI | GGATC | 2 cut(s) | 209, 669 |
| BsrDI | GCAATG | 1 cut(s) | 448 |
| BsrI | ACTGG | 2 cut(s) | 228, 753 |
| BssECI | CCNNGG | 3 cut(s) | 399, 400, 716 |
| BssMI | GATC | 6 cut(s) | 201, 355, 430, 661, 700, 705 |
| BssNI | GRCGYC | 1 cut(s) | 545 |
| BssT1I | CCWWGG | 1 cut(s) | 716 |
| Bst2UI | CCWGG | 1 cut(s) | 401 |
| Bst4CI | ACNGT | 1 cut(s) | 48 |
| BstACI | GRCGYC | 1 cut(s) | 545 |
| BstC8I | GCNNGC | 2 cut(s) | 238, 733 |
| BstDEI | CTNAG | 4 cut(s) | 19, 300, 531, 552 |
| BstKTI | GATC | 6 cut(s) | 204, 358, 433, 664, 703, 708 |
| BstMAI | GTCTC | 1 cut(s) | 215 |
| BstMBI | GATC | 6 cut(s) | 201, 355, 430, 661, 700, 705 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 58 |
| BstNI | CCWGG | 1 cut(s) | 401 |
| BstSCI | CCNGG | 1 cut(s) | 399 |
| BstSFI | CTRYAG | 2 cut(s) | 30, 690 |
| BstSLI | GKGCMC | 1 cut(s) | 372 |
| BstV1I | GCAGC | 2 cut(s) | 283, 483 |
| BstV2I | GAAGAC | 1 cut(s) | 563 |
| BstX2I | RGATCY | 1 cut(s) | 201 |
| BstYI | RGATCY | 1 cut(s) | 201 |
| BsuRI | GGCC | 2 cut(s) | 108, 671 |
| BtgZI | GCGATG | 1 cut(s) | 723 |
| BtsI | GCAGTG | 1 cut(s) | 699 |
| BtsIMutI | CAGTG | 1 cut(s) | 699 |
| Cac8I | GCNNGC | 2 cut(s) | 238, 733 |
| Cfr13I | GGNCC | 1 cut(s) | 107 |
| CseI | GACGC | 1 cut(s) | 67 |
| Csp6I | GTAC | 3 cut(s) | 196, 338, 611 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 85, 120 |
| CviAII | CATG | 3 cut(s) | 325, 634, 639 |
| CviQI | GTAC | 3 cut(s) | 196, 338, 611 |
| DdeI | CTNAG | 4 cut(s) | 19, 300, 531, 552 |
| DpnI | GATC | 6 cut(s) | 203, 357, 432, 663, 702, 707 |
| DpnII | GATC | 6 cut(s) | 201, 355, 430, 661, 700, 705 |
| EaeI | YGGCCR | 1 cut(s) | 669 |
| Eco130I | CCWWGG | 1 cut(s) | 716 |
| Eco57I | CTGAAG | 2 cut(s) | 158, 230 |
| EcoRI | GAATTC | 1 cut(s) | 584 |
| EcoRII | CCWGG | 1 cut(s) | 399 |
| EcoT14I | CCWWGG | 1 cut(s) | 716 |
| EcoT22I | ATGCAT | 1 cut(s) | 330 |
| ErhI | CCWWGG | 1 cut(s) | 716 |
| FaeI | CATG | 3 cut(s) | 328, 637, 642 |
| FaqI | GGGAC | 2 cut(s) | 556, 734 |
| FatI | CATG | 3 cut(s) | 324, 633, 638 |
| FbaI | TGATCA | 2 cut(s) | 355, 700 |
| Fnu4HI | GCNGC | 2 cut(s) | 297, 497 |
| Fsp4HI | GCNGC | 2 cut(s) | 297, 497 |
| FspBI | CTAG | 1 cut(s) | 486 |
| GluI | GCNGC | 2 cut(s) | 297, 497 |
| GsuI | CTGGAG | 1 cut(s) | 597 |
| HaeIII | GGCC | 2 cut(s) | 108, 671 |
| HgaI | GACGC | 1 cut(s) | 67 |
| Hin1I | GRCGYC | 1 cut(s) | 545 |
| Hin1II | CATG | 3 cut(s) | 328, 637, 642 |
| HindIII | AAGCTT | 2 cut(s) | 98, 591 |
| HinfI | GANTC | 4 cut(s) | 436, 515, 521, 565 |
| Hpy166II | GTNNAC | 1 cut(s) | 370 |
| Hpy188I | TCNGA | 6 cut(s) | 138, 249, 265, 435, 520, 705 |
| Hpy188III | TCNNGA | 5 cut(s) | 156, 218, 486, 541, 576 |
| Hpy8I | GTNNAC | 1 cut(s) | 370 |
| Hpy99I | CGWCG | 1 cut(s) | 629 |
| HpyAV | CCTTC | 3 cut(s) | 133, 399, 510 |
| HpyCH4III | ACNGT | 1 cut(s) | 48 |
| HpyCH4IV | ACGT | 1 cut(s) | 545 |
| HpyCH4V | TGCA | 5 cut(s) | 32, 328, 370, 692, 735 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 58 |
| HpyF3I | CTNAG | 4 cut(s) | 19, 300, 531, 552 |
| HpySE526I | ACGT | 1 cut(s) | 545 |
| Hsp92I | GRCGYC | 1 cut(s) | 545 |
| Hsp92II | CATG | 3 cut(s) | 328, 637, 642 |
| Ksp22I | TGATCA | 2 cut(s) | 355, 700 |
| Kzo9I | GATC | 6 cut(s) | 201, 355, 430, 661, 700, 705 |
| LmnI | GCTCC | 2 cut(s) | 64, 728 |
| Lsp1109I | GCAGC | 2 cut(s) | 283, 483 |
| LweI | GCATC | 1 cut(s) | 13 |
| MaeI | CTAG | 1 cut(s) | 486 |
| MaeII | ACGT | 1 cut(s) | 545 |
| MaeIII | GTNAC | 3 cut(s) | 91, 118, 315 |
| MalI | GATC | 6 cut(s) | 203, 357, 432, 663, 702, 707 |
| MboI | GATC | 6 cut(s) | 201, 355, 430, 661, 700, 705 |
| MboII | GAAGA | 4 cut(s) | 236, 568, 593, 610 |
| MflI | RGATCY | 1 cut(s) | 201 |
| MhlI | GDGCHC | 1 cut(s) | 372 |
| MluCI | AATT | 5 cut(s) | 209, 389, 420, 584, 643 |
| MlyI | GAGTC | 1 cut(s) | 445 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 7 cut(s) | 37, 79, 243, 358, 505, 583, 652 |
| Mph1103I | ATGCAT | 1 cut(s) | 330 |
| MspR9I | CCNGG | 1 cut(s) | 401 |
| MvaI | CCWGG | 1 cut(s) | 401 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 58 |
| NdeII | GATC | 6 cut(s) | 201, 355, 430, 661, 700, 705 |
| NlaIII | CATG | 3 cut(s) | 328, 637, 642 |
| NlaIV | GGNNCC | 3 cut(s) | 109, 410, 730 |
| NsiI | ATGCAT | 1 cut(s) | 330 |
| PasI | CCCWGGG | 1 cut(s) | 400 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 78 |
| PfeI | GAWTC | 3 cut(s) | 515, 521, 565 |
| PkrI | GCNGC | 2 cut(s) | 298, 498 |
| PleI | GAGTC | 1 cut(s) | 444 |
| PpsI | GAGTC | 1 cut(s) | 444 |
| Psp6I | CCWGG | 1 cut(s) | 399 |
| PspGI | CCWGG | 1 cut(s) | 399 |
| PspN4I | GGNNCC | 3 cut(s) | 109, 410, 730 |
| PspPI | GGNCC | 1 cut(s) | 107 |
| PstI | CTGCAG | 2 cut(s) | 34, 694 |
| PsuI | RGATCY | 1 cut(s) | 201 |
| RsaI | GTAC | 3 cut(s) | 197, 339, 612 |
| RsaNI | GTAC | 3 cut(s) | 196, 338, 611 |
| SatI | GCNGC | 2 cut(s) | 297, 497 |
| Sau3AI | GATC | 6 cut(s) | 201, 355, 430, 661, 700, 705 |
| Sau96I | GGNCC | 1 cut(s) | 107 |
| SchI | GAGTC | 1 cut(s) | 445 |
| ScrFI | CCNGG | 1 cut(s) | 401 |
| SduI | GDGCHC | 1 cut(s) | 372 |
| SfaNI | GCATC | 1 cut(s) | 13 |
| SfcI | CTRYAG | 2 cut(s) | 30, 690 |
| SmlI | CTYRAG | 1 cut(s) | 362 |
| SmoI | CTYRAG | 1 cut(s) | 362 |
| Sse9I | AATT | 5 cut(s) | 209, 389, 420, 584, 643 |
| SsiI | CCGC | 1 cut(s) | 451 |
| SspMI | CTAG | 1 cut(s) | 486 |
| StyD4I | CCNGG | 1 cut(s) | 399 |
| StyI | CCWWGG | 1 cut(s) | 716 |
| TaaI | ACNGT | 1 cut(s) | 48 |
| TaiI | ACGT | 1 cut(s) | 548 |
| TaqI | TCGA | 1 cut(s) | 8 |
| TaqII | GACCGA | 1 cut(s) | 575 |
| TasI | AATT | 5 cut(s) | 209, 389, 420, 584, 643 |
| TatI | WGTACW | 2 cut(s) | 195, 337 |
| TfiI | GAWTC | 3 cut(s) | 515, 521, 565 |
| TscAI | CASTG | 1 cut(s) | 699 |
| TseI | GCWGC | 2 cut(s) | 296, 496 |
| TspDTI | ATGAA | 1 cut(s) | 324 |
| TspRI | CASTG | 1 cut(s) | 699 |
| VneI | GTGCAC | 1 cut(s) | 368 |
| XapI | RAATTY | 4 cut(s) | 209, 389, 584, 643 |
| XbaI | TCTAGA | 1 cut(s) | 485 |
| XspI | CTAG | 1 cut(s) | 486 |
| ZraI | GACGTC | 1 cut(s) | 546 |
| Zsp2I | ATGCAT | 1 cut(s) | 330 |