Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013697

Physical Location & Seq

Genomic Coordinates Forward (+)

24776767 .. 24778682

Gene Structure 1916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1167700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTTGCGGACTCTGCTGCTTTTTCTTAGTTTCATCCGACGGTTAGAGACAGCTTCCAAACGCAGCACTCTCCACTTAGTTCACATCGTCTTTTGTCTACGACTGTTGGTGCTTACAACTGTTGGTGCTTCTTGTACGTGTTATTCTTTTTGTTGTAATCGTGTTCCTCCTCTCCACAGAGCTCAGGAGCACCTTCTGATCTTTGACGAATTTGAGATGCGTTTAAGCCGATCAGCGAGCTCTGCGGCGAATAAGGAACGCCTGCGATGGACGCAAGAGCTGCATGATAGGTTTGTGGAGGCAGTTACTAAGCTTGGTGGCCCTGATCGGGCAACACCAAAGGGTATCTTGAAGGCCATGAGCGTCTCTGGACTGACCATTTACCACATCAAAAGCCATTTGCAGGTGCAAAAGAGCCTGAAACAGAAATTTGAAGCCCAAGGAAGGTTTCTTGAAAGATATTCAGCAGAACACCATAACACAAACAAGAACCGTCCGATCCTGATCACAAAACCTAAAAAAGCTCCCTTGTCGCAGACGTTGCTGCCTTCTCTCTGTGACGACTCAGAATCAAATGCAAAGGACTTTGGATCGGACTCGGAGCCTGACAGAAGTGAAACAGAAACATCTGCAGAACAATTCCGAACTCTGAAGAAGAAGCTCAGGCTTCACCATCATCAAAATGACCACAATGTCCAGCTTGCACTTAACTCAGAGTTCTGCTATATCCCTCATGAGGACGACCATATCAGATTTCCTTGGAACTTTGCAGCCTGCTCATCTCCTTTACCTTTAGTAGTGCCCAGCTGCTTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

273

Amino Acids

31.17

Weight (kDa)

9.16

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	87 - 135	6.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11361
malus_domestica	MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica	Prupe.6G278300_v2.0.a1
pyrus_communis	pycom04g13920 pycom12g15940
rosa_chinensis	RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata	RLG00000024820
rosa_multiflora	Rmu_sc0000766.1_g000026
rosa_roxburghii	Rroxscaffold_2G00124310
rosa_rugosa	Rorug03G0060900
rosa_samantha	Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana	Rw3G010060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
AasI	GACNNNNNNGTC	1 cut(s)	692
Acc36I	ACCTGC	1 cut(s)	394
AccI	GTMKAC	1 cut(s)	97
AciI	CCGC	2 cut(s)	7, 245
AclWI	GGATC	2 cut(s)	493, 598
AcsI	RAATTY	2 cut(s)	209, 428
AcuI	CTGAAG	1 cut(s)	671
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	4 cut(s)	328, 403, 444, 736
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	352, 434, 455
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AluBI	AGCT	9 cut(s)	53, 182, 240, 280, 313, 524, 661, 700, 807
AluI	AGCT	9 cut(s)	53, 182, 240, 280, 313, 524, 661, 700, 807
Alw21I	GWGCWC	3 cut(s)	184, 192, 242
Alw26I	GTCTC	2 cut(s)	41, 370
AlwI	GGATC	2 cut(s)	493, 598
AoxI	GGCC	2 cut(s)	319, 354
ApeKI	GCWGC	6 cut(s)	16, 63, 280, 544, 770, 807
ApoI	RAATTY	2 cut(s)	209, 428
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	662
BaeGI	GKGCMC	1 cut(s)	804
BanII	GRGCYC	2 cut(s)	184, 242
Bbv12I	GWGCWC	3 cut(s)	184, 192, 242
BbvI	GCAGC	6 cut(s)	3, 75, 267, 531, 782, 794
BccI	CCATC	2 cut(s)	261, 681
BclI	TGATCA	1 cut(s)	504
BcoDI	GTCTC	2 cut(s)	41, 370
BfmI	CTRYAG	1 cut(s)	630
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	7 cut(s)	17, 64, 246, 281, 545, 771, 808
BlsI	GCNGC	7 cut(s)	18, 65, 247, 282, 546, 772, 809
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	603
BmsI	GCATC	1 cut(s)	207
Bpu10I	CCTNAGC	2 cut(s)	183, 662
BsaAI	YACGTR	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	503
BsaJI	CCNNGG	2 cut(s)	439, 758
Bsc4I	CCNNNNNNNGG	4 cut(s)	328, 403, 444, 736
Bse8I	GATNNNNATC	1 cut(s)	503
BseDI	CCNNGG	2 cut(s)	439, 758
BseGI	GGATG	1 cut(s)	33
BseJI	GATNNNNATC	1 cut(s)	503
BseLI	CCNNNNNNNGG	4 cut(s)	328, 403, 444, 736
BseMII	CTCAG	4 cut(s)	197, 579, 676, 726
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	804
BseXI	GCAGC	6 cut(s)	3, 75, 267, 531, 782, 794
BseYI	CCCAGC	1 cut(s)	803
BshFI	GGCC	2 cut(s)	321, 356
BsiHKAI	GWGCWC	3 cut(s)	184, 192, 242
BslI	CCNNNNNNNGG	4 cut(s)	328, 403, 444, 736
BsmAI	GTCTC	2 cut(s)	41, 370
BsmBI	CGTCTC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	321, 356
Bsp1286I	GDGCHC	4 cut(s)	184, 192, 242, 804
Bsp143I	GATC	6 cut(s)	198, 230, 325, 498, 504, 590
BspACI	CCGC	2 cut(s)	7, 245
BspANI	GGCC	2 cut(s)	321, 356
BspCNI	CTCAG	4 cut(s)	196, 578, 675, 725
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	1 cut(s)	603
BspMAI	CTGCAG	1 cut(s)	634
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	2 cut(s)	493, 598
BssECI	CCNNGG	2 cut(s)	439, 758
BssMI	GATC	6 cut(s)	198, 230, 325, 498, 504, 590
BssT1I	CCWWGG	2 cut(s)	439, 758
Bst4CI	ACNGT	4 cut(s)	42, 105, 121, 494
BstAPI	GCANNNNNTGC	2 cut(s)	280, 541
BstBAI	YACGTR	1 cut(s)	138
BstC8I	GCNNGC	4 cut(s)	238, 263, 702, 775
BstDEI	CTNAG	7 cut(s)	26, 76, 183, 309, 565, 662, 712
BstF5I	GGATG	1 cut(s)	33
BstKTI	GATC	6 cut(s)	201, 233, 328, 501, 507, 593
BstMAI	GTCTC	2 cut(s)	41, 370
BstMBI	GATC	6 cut(s)	198, 230, 325, 498, 504, 590
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 242, 271, 280, 541
BstSFI	CTRYAG	1 cut(s)	630
BstSLI	GKGCMC	1 cut(s)	804
BstV1I	GCAGC	6 cut(s)	3, 75, 267, 531, 782, 794
BsuRI	GGCC	2 cut(s)	321, 356
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	4 cut(s)	238, 263, 702, 775
CciI	TCATGA	1 cut(s)	733
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	2 cut(s)	280, 352
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	3 cut(s)	284, 358, 734
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	7 cut(s)	26, 76, 183, 309, 565, 662, 712
DpnI	GATC	6 cut(s)	200, 232, 327, 500, 506, 592
DpnII	GATC	6 cut(s)	198, 230, 325, 498, 504, 590
DrdI	GACNNNNNNGTC	1 cut(s)	692
DseDI	GACNNNNNNGTC	1 cut(s)	692
Ecl136II	GAGCTC	2 cut(s)	182, 240
Eco130I	CCWWGG	2 cut(s)	439, 758
Eco24I	GRGCYC	2 cut(s)	184, 242
Eco53kI	GAGCTC	2 cut(s)	182, 240
Eco57I	CTGAAG	1 cut(s)	671
EcoICRI	GAGCTC	2 cut(s)	182, 240
EcoT14I	CCWWGG	2 cut(s)	439, 758
EcoT38I	GRGCYC	2 cut(s)	184, 242
ErhI	CCWWGG	2 cut(s)	439, 758
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	3 cut(s)	287, 361, 737
FaiI	YATR	7 cut(s)	285, 359, 477, 726, 735, 747, 817
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	3 cut(s)	283, 357, 733
FbaI	TGATCA	1 cut(s)	504
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	7 cut(s)	17, 64, 246, 281, 545, 771, 808
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	2 cut(s)	184, 242
Fsp4HI	GCNGC	7 cut(s)	17, 64, 246, 281, 545, 771, 808
GluI	GCNGC	7 cut(s)	17, 64, 246, 281, 545, 771, 808
GsaI	CCCAGC	1 cut(s)	807
HaeIII	GGCC	2 cut(s)	321, 356
HgaI	GACGC	2 cut(s)	280, 352
Hin1II	CATG	3 cut(s)	287, 361, 737
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	4 cut(s)	10, 563, 569, 596
HphI	GGTGA	1 cut(s)	662
Hpy166II	GTNNAC	2 cut(s)	82, 98
Hpy188III	TCNNGA	6 cut(s)	185, 349, 369, 452, 502, 734
Hpy8I	GTNNAC	2 cut(s)	82, 98
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	4 cut(s)	203, 346, 438, 558
HpyCH4III	ACNGT	4 cut(s)	42, 105, 121, 494
HpyCH4IV	ACGT	2 cut(s)	137, 539
HpyCH4V	TGCA	7 cut(s)	283, 403, 409, 578, 632, 704, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 242, 271, 280, 541
HpyF3I	CTNAG	7 cut(s)	26, 76, 183, 309, 565, 662, 712
HpySE526I	ACGT	2 cut(s)	137, 539
Hsp92II	CATG	3 cut(s)	287, 361, 737
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	6 cut(s)	198, 230, 325, 498, 504, 590
LmnI	GCTCC	3 cut(s)	187, 529, 601
Lsp1109I	GCAGC	6 cut(s)	3, 75, 267, 531, 782, 794
LweI	GCATC	1 cut(s)	207
MaeII	ACGT	2 cut(s)	137, 539
MaeIII	GTNAC	2 cut(s)	304, 557
MalI	GATC	6 cut(s)	200, 232, 327, 500, 506, 592
MboI	GATC	6 cut(s)	198, 230, 325, 498, 504, 590
MboII	GAAGA	2 cut(s)	664, 667
MhlI	GDGCHC	4 cut(s)	184, 192, 242, 804
MluCI	AATT	3 cut(s)	209, 428, 638
MlyI	GAGTC	3 cut(s)	4, 557, 590
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	5 cut(s)	177, 180, 292, 730, 741
MseI	TTAA	2 cut(s)	224, 708
MslI	CAYNNNNRTG	1 cut(s)	681
MspA1I	CMGCKG	1 cut(s)	807
MwoI	GCNNNNNNNGC	5 cut(s)	13, 242, 271, 280, 541
NdeII	GATC	6 cut(s)	198, 230, 325, 498, 504, 590
NlaIII	CATG	3 cut(s)	287, 361, 737
NlaIV	GGNNCC	1 cut(s)	603
NmuCI	GTSAC	1 cut(s)	557
PagI	TCATGA	1 cut(s)	733
PaqCI	CACCTGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	569
PkrI	GCNGC	7 cut(s)	18, 65, 247, 282, 546, 772, 809
PleI	GAGTC	3 cut(s)	4, 557, 590
PpsI	GAGTC	3 cut(s)	4, 557, 590
Ppu21I	YACGTR	1 cut(s)	138
Psp124BI	GAGCTC	2 cut(s)	184, 242
PspFI	CCCAGC	1 cut(s)	803
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	320
PstI	CTGCAG	1 cut(s)	634
PvuII	CAGCTG	1 cut(s)	807
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	681
SacI	GAGCTC	2 cut(s)	184, 242
SaqAI	TTAA	2 cut(s)	224, 708
SatI	GCNGC	7 cut(s)	17, 64, 246, 281, 545, 771, 808
Sau3AI	GATC	6 cut(s)	198, 230, 325, 498, 504, 590
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	3 cut(s)	4, 557, 590
SduI	GDGCHC	4 cut(s)	184, 192, 242, 804
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	630
SmiMI	CAYNNNNRTG	1 cut(s)	681
Sse9I	AATT	3 cut(s)	209, 428, 638
SsiI	CCGC	2 cut(s)	7, 245
SstI	GAGCTC	2 cut(s)	184, 242
StyI	CCWWGG	2 cut(s)	439, 758
TaaI	ACNGT	4 cut(s)	42, 105, 121, 494
TaiI	ACGT	2 cut(s)	140, 542
TasI	AATT	3 cut(s)	209, 428, 638
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	2 cut(s)	224, 708
Tru9I	TTAA	2 cut(s)	224, 708
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	6 cut(s)	16, 63, 280, 544, 770, 807
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	1 cut(s)	22
XapI	RAATTY	2 cut(s)	209, 428
XmiI	GTMKAC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.