Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0013697

Physical Location & Seq

Genomic Coordinates Forward (+)

39372969 .. 39376943

Gene Structure 3975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024820

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGATGCAGGTAATTGACAAGCGATCAAGGACCCAAAATGCGAGGAGTTATCCCACATTGAGAATTACAACCAAGCGCAATGGTTGGACTTGGGTCTGTGGCCACATCATCCCAATCCTCCTCTTCCCATCACAGCTGTGGACTAATTCGGTGATCGCAATGGGTTCGACTAAATGCTTAGATGCCTCTGCAGGGAACAAGGAACGGTTGCGGTGGACGCAGGAGCTACACGATATGTTCGTCGAGGCAGTTACCAAGCTTGGTGGCCCTGATAGGGCAACACCAAAGGGTATTCTGAAGGCTATGGGAGTTTCCGGACTGACCATCTACCATATCAAAAGCCATTTGCAGAAGTACAGGATCTCAAAATTTGTTCCAGAGACTACCAGTAAAGCAGGCAATCTCCAGAGGAAAAACATTTCAGAAATACTGCCTAACTTCGGCACAACATCTGCTGCTCAGCTCAATGAAGCATTACATCTCATGCATATACAAGTACAAAGGAGATTGAGTGATCAACTTGAGGTGCACAAGAGCTTGAAGCAAAAATTTGAAGCCCAGGGAAGGTTCCTTGATACAATTTCAGCAGATCGGAGTTGCAGTGATAACCGCCCGACCTTTACGAAACCTATCAGACCCATATCTAGAAAATCGCTGCCTTCTCTCTGTGAGGAATCCGAATCAAATGCTAAGGACTTCGGGACGTCTGACTCGGACGCTGAGAAGACCGAGATTCAATCCTCTGGAGAAGAATTCCAAGCTTTGAAGAAGCAAAGGGTACATAATCAAAACGACGACAACATGGCATGGAATTTTCCTATCATTGAGGATCAAACGGCCCATATATCATCATATCCTGCAGTGTATGATCAGATCAGCTTTCCTTGGAACTTTGGAGCCTGCACATCGCCTTTAGTCCCCAGTTTCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

311

Amino Acids

35.0

Weight (kDa)

9.24

Isoelectric Point (pI)

58.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	69 - 120	1.2e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	154 - 194	1.1e-12	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11361
malus_domestica	MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica	Prupe.6G278300_v2.0.a1
pyrus_communis	pycom04g13920 pycom12g15940
rosa_chinensis	RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata	RLG00000024820
rosa_multiflora	Rmu_sc0000766.1_g000026
rosa_roxburghii	Rroxscaffold_2G00124310
rosa_rugosa	Rorug03G0060900
rosa_samantha	Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana	Rw3G010060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	707
AccIII	TCCGGA	1 cut(s)	314
AciI	CCGC	2 cut(s)	211, 610
AclWI	GGATC	2 cut(s)	368, 837
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	4 cut(s)	368, 548, 752, 811
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	704
AfaI	GTAC	3 cut(s)	356, 498, 780
AfiI	CCNNNNNNNGG	4 cut(s)	192, 274, 440, 564
AgsI	TTSAA	4 cut(s)	541, 554, 737, 766
AjnI	CCWGG	1 cut(s)	558
AleI	CACNNNNGTG	1 cut(s)	136
AluBI	AGCT	7 cut(s)	136, 226, 259, 463, 537, 761, 879
AluI	AGCT	7 cut(s)	136, 226, 259, 463, 537, 761, 879
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	374
Alw44I	GTGCAC	1 cut(s)	527
AlwI	GGATC	2 cut(s)	368, 837
Aor13HI	TCCGGA	1 cut(s)	314
AoxI	GGCC	3 cut(s)	100, 265, 837
ApaLI	GTGCAC	1 cut(s)	527
ApeKI	GCWGC	2 cut(s)	455, 655
ApoI	RAATTY	4 cut(s)	368, 548, 752, 811
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	30, 266, 838
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	30
BaeGI	GKGCMC	1 cut(s)	531
BalI	TGGCCA	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	731
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	442, 642
BccI	CCATC	2 cut(s)	136, 332
BceAI	ACGGC	1 cut(s)	852
BcgI	CGANNNNNNTGC	4 cut(s)	147, 181, 668, 702
BciT130I	CCWGG	1 cut(s)	560
BclI	TGATCA	2 cut(s)	514, 868
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	2 cut(s)	189, 858
BisI	GCNGC	2 cut(s)	456, 656
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	2 cut(s)	457, 657
Bme1390I	CCNGG	1 cut(s)	560
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	3 cut(s)	30, 266, 838
BmiI	GGNNCC	3 cut(s)	32, 569, 898
BmrFI	CCNGG	1 cut(s)	560
BmrI	ACTGGG	1 cut(s)	915
BmsI	GCATC	1 cut(s)	172
BmuI	ACTGGG	1 cut(s)	915
BoxI	GACNNNNGTC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	731
BpmI	CTGGAG	2 cut(s)	389, 765
Bpu10I	CCTNAGC	1 cut(s)	690
Bpu1102I	GCTNAGC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	704
BsaJI	CCNNGG	3 cut(s)	558, 559, 884
BsaWI	WCCGGW	1 cut(s)	314
BsaXI	ACNNNNNCTCC	4 cut(s)	496, 526, 586, 616
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 274, 440, 564
Bse1I	ACTGG	2 cut(s)	387, 921
Bse3DI	GCAATG	2 cut(s)	85, 165
BseAI	TCCGGA	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	3 cut(s)	558, 559, 884
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	4 cut(s)	192, 274, 440, 564
BseMI	GCAATG	2 cut(s)	85, 165
BseMII	CTCAG	2 cut(s)	473, 711
BseNI	ACTGG	2 cut(s)	387, 921
BseRI	GAGGAG	2 cut(s)	58, 110
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	2 cut(s)	442, 642
BsgI	GTGCAG	1 cut(s)	886
BshFI	GGCC	3 cut(s)	102, 267, 839
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	2 cut(s)	715, 902
BslI	CCNNNNNNNGG	4 cut(s)	192, 274, 440, 564
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	715, 902
BsnI	GGCC	3 cut(s)	102, 267, 839
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp13I	TCCGGA	1 cut(s)	314
Bsp143I	GATC	8 cut(s)	23, 153, 360, 514, 589, 829, 868, 873
Bsp1720I	GCTNAGC	1 cut(s)	459
BspACI	CCGC	2 cut(s)	211, 610
BspANI	GGCC	3 cut(s)	102, 267, 839
BspCNI	CTCAG	2 cut(s)	472, 712
BspEI	TCCGGA	1 cut(s)	314
BspLI	GGNNCC	3 cut(s)	32, 569, 898
BspMAI	CTGCAG	2 cut(s)	193, 862
BspPI	GGATC	2 cut(s)	368, 837
BsrDI	GCAATG	2 cut(s)	85, 165
BsrI	ACTGG	2 cut(s)	387, 921
BssECI	CCNNGG	3 cut(s)	558, 559, 884
BssMI	GATC	8 cut(s)	23, 153, 360, 514, 589, 829, 868, 873
BssNI	GRCGYC	1 cut(s)	704
BssT1I	CCWWGG	1 cut(s)	884
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	704
BstC8I	GCNNGC	2 cut(s)	397, 901
BstDEI	CTNAG	4 cut(s)	178, 459, 690, 720
BstF5I	GGATG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	8 cut(s)	26, 156, 363, 517, 592, 832, 871, 876
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	8 cut(s)	23, 153, 360, 514, 589, 829, 868, 873
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	560
BstPAI	GACNNNNGTC	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	558
BstSFI	CTRYAG	2 cut(s)	189, 858
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	2 cut(s)	442, 642
BstV2I	GAAGAC	1 cut(s)	731
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	102, 267, 839
BtgZI	GCGATG	1 cut(s)	891
BtsCI	GGATG	1 cut(s)	108
BtsI	GCAGTG	2 cut(s)	607, 867
BtsIMutI	CAGTG	2 cut(s)	607, 867
Cac8I	GCNNGC	2 cut(s)	397, 901
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	3 cut(s)	30, 266, 838
CseI	GACGC	2 cut(s)	226, 725
Csp6I	GTAC	3 cut(s)	355, 497, 779
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	3 cut(s)	484, 802, 807
CviQI	GTAC	3 cut(s)	355, 497, 779
DdeI	CTNAG	4 cut(s)	178, 459, 690, 720
DpnI	GATC	8 cut(s)	25, 155, 362, 516, 591, 831, 870, 875
DpnII	GATC	8 cut(s)	23, 153, 360, 514, 589, 829, 868, 873
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	884
Eco47I	GGWCC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	752
EcoRII	CCWGG	1 cut(s)	558
EcoT14I	CCWWGG	1 cut(s)	884
EcoT22I	ATGCAT	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	884
FaeI	CATG	3 cut(s)	487, 805, 810
FaqI	GGGAC	2 cut(s)	715, 902
FatI	CATG	3 cut(s)	483, 801, 806
FbaI	TGATCA	2 cut(s)	514, 868
Fnu4HI	GCNGC	2 cut(s)	456, 656
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	456, 656
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	2 cut(s)	456, 656
GsuI	CTGGAG	2 cut(s)	389, 765
HaeIII	GGCC	3 cut(s)	102, 267, 839
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	2 cut(s)	226, 725
HhaI	GCGC	1 cut(s)	78
Hin1I	GRCGYC	1 cut(s)	704
Hin1II	CATG	3 cut(s)	487, 805, 810
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HindIII	AAGCTT	2 cut(s)	257, 759
HinfI	GANTC	4 cut(s)	674, 680, 710, 733
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	3 cut(s)	141, 216, 529
Hpy188I	TCNGA	8 cut(s)	297, 424, 594, 635, 679, 709, 715, 873
Hpy188III	TCNNGA	6 cut(s)	315, 377, 406, 645, 700, 744
Hpy8I	GTNNAC	3 cut(s)	141, 216, 529
Hpy99I	CGWCG	2 cut(s)	245, 797
HpyAV	CCTTC	3 cut(s)	292, 558, 669
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	704
HpyCH4V	TGCA	8 cut(s)	7, 191, 349, 487, 529, 600, 860, 903
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	4 cut(s)	178, 459, 690, 720
HpySE526I	ACGT	1 cut(s)	704
Hsp92I	GRCGYC	1 cut(s)	704
Hsp92II	CATG	3 cut(s)	487, 805, 810
HspAI	GCGC	1 cut(s)	76
Kpn2I	TCCGGA	1 cut(s)	314
Ksp22I	TGATCA	2 cut(s)	514, 868
Kzo9I	GATC	8 cut(s)	23, 153, 360, 514, 589, 829, 868, 873
LmnI	GCTCC	2 cut(s)	223, 896
Lsp1109I	GCAGC	2 cut(s)	442, 642
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	645
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	8 cut(s)	25, 155, 362, 516, 591, 831, 870, 875
MboI	GATC	8 cut(s)	23, 153, 360, 514, 589, 829, 868, 873
MboII	GAAGA	4 cut(s)	115, 736, 761, 778
MflI	RGATCY	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	531
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	8 cut(s)	12, 63, 145, 368, 548, 579, 752, 811
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	704
MmeI	TCCRAC	1 cut(s)	65
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	489
MroI	TCCGGA	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	136
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	560
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	8 cut(s)	23, 153, 360, 514, 589, 829, 868, 873
NlaIII	CATG	3 cut(s)	487, 805, 810
NlaIV	GGNNCC	3 cut(s)	32, 569, 898
NsiI	ATGCAT	1 cut(s)	489
OliI	CACNNNNGTG	1 cut(s)	136
PasI	CCCWGGG	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	674, 680, 733
PkrI	GCNGC	2 cut(s)	457, 657
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
PpuMI	RGGWCCY	1 cut(s)	30
PshAI	GACNNNNGTC	1 cut(s)	92
Psp5II	RGGWCCY	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	3 cut(s)	32, 569, 898
PspPI	GGNCC	3 cut(s)	30, 266, 838
PspPPI	RGGWCCY	1 cut(s)	30
PstI	CTGCAG	2 cut(s)	193, 862
PsuI	RGATCY	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	3 cut(s)	356, 498, 780
RsaNI	GTAC	3 cut(s)	355, 497, 779
RseI	CAYNNNNRTG	1 cut(s)	136
SatI	GCNGC	2 cut(s)	456, 656
Sau3AI	GATC	8 cut(s)	23, 153, 360, 514, 589, 829, 868, 873
Sau96I	GGNCC	3 cut(s)	30, 266, 838
SchI	GAGTC	1 cut(s)	704
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	2 cut(s)	189, 858
SinI	GGWCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	8 cut(s)	12, 63, 145, 368, 548, 579, 752, 811
SsiI	CCGC	2 cut(s)	211, 610
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	1 cut(s)	558
StyI	CCWWGG	1 cut(s)	884
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	707
TaqI	TCGA	2 cut(s)	167, 243
TaqII	GACCGA	1 cut(s)	743
TasI	AATT	8 cut(s)	12, 63, 145, 368, 548, 579, 752, 811
TatI	WGTACW	2 cut(s)	354, 496
TfiI	GAWTC	3 cut(s)	674, 680, 733
TscAI	CASTG	2 cut(s)	607, 867
TseI	GCWGC	2 cut(s)	455, 655
TspDTI	ATGAA	1 cut(s)	483
TspRI	CASTG	2 cut(s)	607, 867
VneI	GTGCAC	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	30
XapI	RAATTY	4 cut(s)	368, 548, 752, 811
XbaI	TCTAGA	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XspI	CTAG	1 cut(s)	645
ZraI	GACGTC	1 cut(s)	705
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.