Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0013697

Physical Location & Seq

Genomic Coordinates Reverse (-)

10198587 .. 10204591

Gene Structure 6005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG118600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAGATGGCCACCAGTCCCCGAACCGTCGAGGAGATCTTCAAGGATTACGGTGCTAGAAGAGCCGCCGTCGTCCGTGCTTTGACTTATGTATGTGTTATGTATAATGACAGGAAACGACTTTTTAGCTTGATCAATGATCTGCCTACCGTCTTTGAAGTTGTGACGGATAGGAAACCCGCTAAAGACAAGCCTAGTGTGGATAGCGGAAGCAAATCCCGAGGCAGCACAAAGAGATCTGGTGATGGAATAATGAAAAGCAACCCTAAGCTAGCAGATGAGAGTTTTGAGGAGGAGGATGACGAACATAGGAACAAGGAACGGTTGCGTTGGACGCAGGAGCTACACGATATGTTCGTCGAGGCAGTTACCAAGCTTGGTGGCCCTGATAGGGCAACACCAAAGGGTATTCTGAAGGCTATGGGAGTTCCTGGACTGACCATCTACCATATCAAAAGCCATTTGCAGAAGTACAGGATCTCAAAATTTGTCCCAGAGACTACCAGTAAAGCAGGCAATCTTCAGAGGAAAAACATTTCAGAAATACTGCCTAACTTCGGCACAACATCTGCTGCTCAGCTCAATGAAGCGTTACATCTCATGCATATACAAGTACAAAGGAGATTGAGTGATCAACTTGAGGTGCACAAGAGCTTGAAGCAAAAATTTGAAGCCCAGGGAAGGTTCCTTGATACAATTTCAGCAGATCGGAGTCGCAATGATAACCGCCCGACCTTTACGAAACCTATCAAACCCATATCTAGAAAATCGCTGCCTTCTCTCTGTGAGGAATCCGAATCAAATGCTAAGGACTTCGGGACGTCTGACTCGGACGCTGAGAAGACCGAGATTCAATCCTCTGGAGAAGAATTCCAAGCTTTGAAGAAGCAAAGGGTACATAATCAAAACGACGACAACATGGCATGGAATTTTCCTATCATTGAGGATCAAACGGCCAATATATCATCATATCCTGCAGTGTGTGATCAGATCAGCTTTCCTTGGAACTTTGGAGCCTGCACATCGCCTTTAGTCCCCAGTTTCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

349

Amino Acids

39.43

Weight (kDa)

8.51

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	108 - 159	1.4e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	193 - 233	1.4e-12	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11361
malus_domestica	MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica	Prupe.6G278300_v2.0.a1
pyrus_communis	pycom04g13920 pycom12g15940
rosa_chinensis	RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata	RLG00000024820
rosa_multiflora	Rmu_sc0000766.1_g000026
rosa_roxburghii	Rroxscaffold_2G00124310
rosa_rugosa	Rorug03G0060900
rosa_samantha	Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana	Rw3G010060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	824
AciI	CCGC	4 cut(s)	66, 180, 207, 727
AclWI	GGATC	2 cut(s)	485, 954
AcoI	YGGCCR	2 cut(s)	9, 954
AcsI	RAATTY	4 cut(s)	485, 665, 869, 928
AcuI	CTGAAG	2 cut(s)	434, 506
AcyI	GRCGYC	1 cut(s)	821
AfaI	GTAC	3 cut(s)	473, 615, 897
AfiI	CCNNNNNNNGG	3 cut(s)	391, 557, 681
AgsI	TTSAA	6 cut(s)	43, 158, 658, 671, 854, 883
AjnI	CCWGG	2 cut(s)	430, 675
AluBI	AGCT	8 cut(s)	129, 271, 343, 376, 580, 654, 878, 996
AluI	AGCT	8 cut(s)	129, 271, 343, 376, 580, 654, 878, 996
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	1 cut(s)	491
Alw44I	GTGCAC	1 cut(s)	644
AlwI	GGATC	2 cut(s)	485, 954
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	3 cut(s)	9, 382, 954
ApaLI	GTGCAC	1 cut(s)	644
ApeKI	GCWGC	3 cut(s)	225, 572, 772
ApoI	RAATTY	4 cut(s)	485, 665, 869, 928
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	1 cut(s)	254
AsuNHI	GCTAGC	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	648
BalI	TGGCCA	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	848
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	3 cut(s)	237, 559, 759
BccI	CCATC	2 cut(s)	239, 449
BceAI	ACGGC	2 cut(s)	53, 969
BcgI	CGANNNNNNTGC	2 cut(s)	785, 819
BciT130I	CCWGG	2 cut(s)	432, 677
BclI	TGATCA	3 cut(s)	132, 631, 985
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	4 cut(s)	57, 195, 272, 762
BfmI	CTRYAG	1 cut(s)	975
BglII	AGATCT	2 cut(s)	36, 236
BisI	GCNGC	4 cut(s)	66, 226, 573, 773
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	4 cut(s)	67, 227, 574, 774
Bme1390I	CCNGG	2 cut(s)	432, 677
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	686, 1015
BmrFI	CCNGG	2 cut(s)	432, 677
BmrI	ACTGGG	1 cut(s)	1032
BmtI	GCTAGC	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	1032
BpiI	GAAGAC	1 cut(s)	848
BpmI	CTGGAG	1 cut(s)	882
Bpu10I	CCTNAGC	2 cut(s)	267, 807
Bpu1102I	GCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	659
BsaHI	GRCGYC	1 cut(s)	821
BsaJI	CCNNGG	4 cut(s)	220, 675, 676, 1001
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 557, 681
Bse1I	ACTGG	3 cut(s)	15, 504, 1038
Bse3DI	GCAATG	1 cut(s)	724
BseBI	CCWGG	2 cut(s)	432, 677
BseDI	CCNNGG	4 cut(s)	220, 675, 676, 1001
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	3 cut(s)	391, 557, 681
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	2 cut(s)	590, 828
BseNI	ACTGG	3 cut(s)	15, 504, 1038
BseRI	GAGGAG	3 cut(s)	47, 305, 308
BseSI	GKGCMC	1 cut(s)	648
BseXI	GCAGC	3 cut(s)	237, 559, 759
BsgI	GTGCAG	1 cut(s)	1003
BshFI	GGCC	3 cut(s)	11, 384, 956
BsiHKAI	GWGCWC	1 cut(s)	648
BsiHKCI	CYCGRG	1 cut(s)	219
BslFI	GGGAC	4 cut(s)	3, 476, 832, 1019
BslI	CCNNNNNNNGG	3 cut(s)	391, 557, 681
BsmAI	GTCTC	1 cut(s)	491
BsmFI	GGGAC	4 cut(s)	3, 476, 832, 1019
BsnI	GGCC	3 cut(s)	11, 384, 956
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp1720I	GCTNAGC	1 cut(s)	576
BspACI	CCGC	4 cut(s)	66, 180, 207, 727
BspANI	GGCC	3 cut(s)	11, 384, 956
BspCNI	CTCAG	2 cut(s)	589, 829
BspLI	GGNNCC	2 cut(s)	686, 1015
BspMAI	CTGCAG	1 cut(s)	979
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	2 cut(s)	485, 954
BspQI	GCTCTTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	724
BsrI	ACTGG	3 cut(s)	15, 504, 1038
BssECI	CCNNGG	4 cut(s)	220, 675, 676, 1001
BssNI	GRCGYC	1 cut(s)	821
BssT1I	CCWWGG	1 cut(s)	1001
Bst2UI	CCWGG	2 cut(s)	432, 677
Bst4CI	ACNGT	4 cut(s)	28, 53, 151, 324
Bst6I	CTCTTC	1 cut(s)	55
BstACI	GRCGYC	1 cut(s)	821
BstC8I	GCNNGC	3 cut(s)	273, 514, 1018
BstDEI	CTNAG	4 cut(s)	267, 576, 807, 837
BstF5I	GGATG	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	491
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 334
BstNI	CCWGG	2 cut(s)	432, 677
BstSCI	CCNGG	2 cut(s)	430, 675
BstSFI	CTRYAG	1 cut(s)	975
BstSLI	GKGCMC	1 cut(s)	648
BstV1I	GCAGC	3 cut(s)	237, 559, 759
BstV2I	GAAGAC	1 cut(s)	848
BstX2I	RGATCY	3 cut(s)	36, 236, 477
BstYI	RGATCY	3 cut(s)	36, 236, 477
BsuRI	GGCC	3 cut(s)	11, 384, 956
BtgZI	GCGATG	1 cut(s)	1008
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	984
BtsIMutI	CAGTG	1 cut(s)	984
Cac8I	GCNNGC	3 cut(s)	273, 514, 1018
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	2 cut(s)	343, 842
Csp6I	GTAC	3 cut(s)	472, 614, 896
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	3 cut(s)	601, 919, 924
CviQI	GTAC	3 cut(s)	472, 614, 896
DdeI	CTNAG	4 cut(s)	267, 576, 807, 837
EaeI	YGGCCR	2 cut(s)	9, 954
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	1001
Eco57I	CTGAAG	2 cut(s)	434, 506
Eco88I	CYCGRG	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	869
EcoRII	CCWGG	2 cut(s)	430, 675
EcoT14I	CCWWGG	1 cut(s)	1001
EcoT22I	ATGCAT	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	1001
FaeI	CATG	3 cut(s)	604, 922, 927
FaqI	GGGAC	4 cut(s)	3, 476, 832, 1019
FatI	CATG	3 cut(s)	600, 918, 923
FauI	CCCGC	1 cut(s)	187
FbaI	TGATCA	3 cut(s)	132, 631, 985
Fnu4HI	GCNGC	4 cut(s)	66, 226, 573, 773
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	4 cut(s)	66, 226, 573, 773
FspBI	CTAG	4 cut(s)	57, 195, 272, 762
GluI	GCNGC	4 cut(s)	66, 226, 573, 773
GsuI	CTGGAG	1 cut(s)	882
HaeIII	GGCC	3 cut(s)	11, 384, 956
HgaI	GACGC	2 cut(s)	343, 842
Hin1I	GRCGYC	1 cut(s)	821
Hin1II	CATG	3 cut(s)	604, 922, 927
HindIII	AAGCTT	2 cut(s)	374, 876
HinfI	GANTC	5 cut(s)	712, 791, 797, 827, 850
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	8 cut(s)	414, 525, 541, 711, 796, 826, 832, 990
Hpy188III	TCNNGA	4 cut(s)	219, 762, 817, 861
Hpy8I	GTNNAC	1 cut(s)	646
Hpy99I	CGWCG	4 cut(s)	32, 74, 362, 914
HpyAV	CCTTC	3 cut(s)	409, 675, 786
HpyCH4III	ACNGT	4 cut(s)	28, 53, 151, 324
HpyCH4IV	ACGT	1 cut(s)	821
HpyCH4V	TGCA	5 cut(s)	466, 604, 646, 977, 1020
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 334
HpyF3I	CTNAG	4 cut(s)	267, 576, 807, 837
HpySE526I	ACGT	1 cut(s)	821
Hsp92I	GRCGYC	1 cut(s)	821
Hsp92II	CATG	3 cut(s)	604, 922, 927
Ksp22I	TGATCA	3 cut(s)	132, 631, 985
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	2 cut(s)	340, 1013
Lsp1109I	GCAGC	3 cut(s)	237, 559, 759
MaeI	CTAG	4 cut(s)	57, 195, 272, 762
MaeII	ACGT	1 cut(s)	821
MaeIII	GTNAC	3 cut(s)	163, 367, 591
MboII	GAAGA	6 cut(s)	31, 72, 512, 853, 878, 895
MflI	RGATCY	3 cut(s)	36, 236, 477
MhlI	GDGCHC	1 cut(s)	648
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	5 cut(s)	485, 665, 696, 869, 928
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	2 cut(s)	721, 821
MmeI	TCCRAC	1 cut(s)	311
Mox20I	TGGCCA	1 cut(s)	11
Mph1103I	ATGCAT	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	432, 677
MvaI	CCWGG	2 cut(s)	432, 677
MwoI	GCNNNNNNNGC	2 cut(s)	62, 334
NheI	GCTAGC	1 cut(s)	271
NlaIII	CATG	3 cut(s)	604, 922, 927
NlaIV	GGNNCC	2 cut(s)	686, 1015
NmuCI	GTSAC	1 cut(s)	163
NsiI	ATGCAT	1 cut(s)	606
PasI	CCCWGGG	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PfeI	GAWTC	3 cut(s)	791, 797, 850
PfoI	TCCNGGA	1 cut(s)	430
PkrI	GCNGC	4 cut(s)	67, 227, 574, 774
PleI	GAGTC	2 cut(s)	720, 821
PpsI	GAGTC	2 cut(s)	720, 821
Psp6I	CCWGG	2 cut(s)	430, 675
PspGI	CCWGG	2 cut(s)	430, 675
PspN4I	GGNNCC	2 cut(s)	686, 1015
PspPI	GGNCC	1 cut(s)	383
PstI	CTGCAG	1 cut(s)	979
PsuI	RGATCY	3 cut(s)	36, 236, 477
RsaI	GTAC	3 cut(s)	473, 615, 897
RsaNI	GTAC	3 cut(s)	472, 614, 896
SapI	GCTCTTC	1 cut(s)	55
SatI	GCNGC	4 cut(s)	66, 226, 573, 773
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	2 cut(s)	721, 821
ScrFI	CCNGG	2 cut(s)	432, 677
SduI	GDGCHC	1 cut(s)	648
SfcI	CTRYAG	1 cut(s)	975
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	5 cut(s)	485, 665, 696, 869, 928
SsiI	CCGC	4 cut(s)	66, 180, 207, 727
SspMI	CTAG	4 cut(s)	57, 195, 272, 762
StyD4I	CCNGG	2 cut(s)	430, 675
StyI	CCWWGG	1 cut(s)	1001
TaaI	ACNGT	4 cut(s)	28, 53, 151, 324
TaiI	ACGT	1 cut(s)	824
TaqI	TCGA	2 cut(s)	30, 360
TaqII	GACCGA	1 cut(s)	860
TasI	AATT	5 cut(s)	485, 665, 696, 869, 928
TatI	WGTACW	2 cut(s)	471, 613
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	3 cut(s)	791, 797, 850
TscAI	CASTG	1 cut(s)	984
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	3 cut(s)	225, 572, 772
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	269, 600
TspGWI	ACGGA	2 cut(s)	65, 182
TspRI	CASTG	1 cut(s)	984
VneI	GTGCAC	1 cut(s)	644
XapI	RAATTY	4 cut(s)	485, 665, 869, 928
XbaI	TCTAGA	1 cut(s)	761
XspI	CTAG	4 cut(s)	57, 195, 272, 762
ZraI	GACGTC	1 cut(s)	822
Zsp2I	ATGCAT	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.