Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013697

Physical Location & Seq

Genomic Coordinates Forward (+)

26103449 .. 26105093

Gene Structure 1645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G278300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCTTGGGGCTGCTCTGATACCGGTCGAATTTGAAATGGCTCCGAGTCAATCAGATGGCTCTGCGGGTAGGGAGCGCCTGCGCTGGACGCAAGAGCTACACGATAGGTTCGTAGAGGCAGTCACTAAGCTTGGTGGCCCTGATAGGGCAACACCAAAGGGCATCTTGAAGGCTATGAGCGTTTCTGGACTGACCATCTACCATATCAAAAGCCATTTGCAGAAGTACAGGATATCAAAGTTCATTCCAGAGTCGACCAGTAAAGGCAAACTTCAGAAGAAAAACATTTCAGAAATGCTCCCTAATTTCGGTGCAACGTCTGGTGCTCAGCTCAATGAAGCCTTAAAAATTATGCAGATACAAGTACAGAGGAGACTGAGTGATCAAAATGAGGTGCAAAAGATTCTGAAACATAAAATTGAAGCCCAAGCAAGGTTCCTTGACATATTTTCAGCAGAACGCCATAACAACAACAAGAACCGTCCGATCTTAATCACAAAACGCAGCAAAGTACCGTTGCCTCGGACATCGCTGCCTTCACTTTGCGAAGACTCAGAATCAAATGCAAAGGAGTTTTGTTCTGACTCAGAGGCTGCTAAGACTGAAATACAATCCTCTGCAGAACAATTCCAATCTCTGAAGAGGCTTAGGCTACATCATCAAAACGACGAGGTCTGCGAGATAGCACTCAATTCAGAGTGGTATAATCAAAGCCACAGCTTGCTTCTCCCTCATGAGGACCCTATCAACTTTCCTTGGAACCTTGCAGACTGCTCATCTCCCTTGGTGCCAACCTGCTTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

269

Amino Acids

30.28

Weight (kDa)

8.75

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11361
malus_domestica	MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica	Prupe.6G278300_v2.0.a1
pyrus_communis	pycom04g13920 pycom12g15940
rosa_chinensis	RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata	RLG00000024820
rosa_multiflora	Rmu_sc0000766.1_g000026
rosa_roxburghii	Rroxscaffold_2G00124310
rosa_rugosa	Rorug03G0060900
rosa_samantha	Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana	Rw3G010060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	803
AccB1I	GGYRCC	1 cut(s)	787
AccI	GTMKAC	1 cut(s)	254
AciI	CCGC	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	2 cut(s)	257, 659
AfaI	GTAC	3 cut(s)	227, 366, 513
AfiI	CCNNNNNNNGG	4 cut(s)	145, 308, 432, 736
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	35, 169, 422
AluBI	AGCT	4 cut(s)	97, 130, 331, 720
AluI	AGCT	4 cut(s)	97, 130, 331, 720
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	367
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	4 cut(s)	11, 504, 532, 593
ApoI	RAATTY	1 cut(s)	29
AsiGI	ACCGGT	1 cut(s)	22
AspLEI	GCGC	2 cut(s)	78, 84
AspS9I	GGNCC	2 cut(s)	137, 739
AvaII	GGWCC	1 cut(s)	739
BanI	GGYRCC	1 cut(s)	787
BbsI	GAAGAC	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	3 cut(s)	516, 519, 580
BccI	CCATC	2 cut(s)	50, 203
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	367
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	79
BfuAI	ACCTGC	1 cut(s)	803
BisI	GCNGC	4 cut(s)	12, 505, 533, 594
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	4 cut(s)	13, 506, 534, 595
Bme18I	GGWCC	1 cut(s)	739
BmgT120I	GGNCC	2 cut(s)	137, 739
BmiI	GGNNCC	5 cut(s)	42, 437, 741, 761, 789
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	647
Bpu1102I	GCTNAGC	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	521, 755, 783
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 308, 432, 736
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	491
BseDI	CCNNGG	3 cut(s)	521, 755, 783
BseJI	GATNNNNATC	1 cut(s)	491
BseLI	CCNNNNNNNGG	4 cut(s)	145, 308, 432, 736
BseMII	CTCAG	4 cut(s)	341, 368, 567, 600
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	385
BseXI	GCAGC	3 cut(s)	516, 519, 580
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	787
BshTI	ACCGGT	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	4 cut(s)	145, 308, 432, 736
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	382, 486
Bsp1720I	GCTNAGC	1 cut(s)	327
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	4 cut(s)	340, 369, 566, 599
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	5 cut(s)	42, 437, 741, 761, 789
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	803
BspT107I	GGYRCC	1 cut(s)	787
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	258
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	3 cut(s)	521, 755, 783
BssMI	GATC	2 cut(s)	382, 486
BssT1I	CCWWGG	2 cut(s)	755, 783
Bst4CI	ACNGT	2 cut(s)	482, 516
Bst6I	CTCTTC	1 cut(s)	635
BstC8I	GCNNGC	2 cut(s)	80, 722
BstDEI	CTNAG	7 cut(s)	126, 327, 377, 553, 586, 597, 647
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	2 cut(s)	78, 84
BstKTI	GATC	2 cut(s)	385, 489
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	382, 486
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	3 cut(s)	516, 519, 580
BstV2I	GAAGAC	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	513
BveI	ACCTGC	1 cut(s)	803
Cac8I	GCNNGC	2 cut(s)	80, 722
CaiI	CAGNNNCTG	1 cut(s)	593
CciI	TCATGA	1 cut(s)	733
CfoI	GCGC	2 cut(s)	78, 84
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	137, 739
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	3 cut(s)	226, 365, 512
CspAI	ACCGGT	1 cut(s)	22
CviAII	CATG	1 cut(s)	734
CviQI	GTAC	3 cut(s)	226, 365, 512
DdeI	CTNAG	7 cut(s)	126, 327, 377, 553, 586, 597, 647
DpnI	GATC	2 cut(s)	384, 488
DpnII	GATC	2 cut(s)	382, 486
Eam1104I	CTCTTC	1 cut(s)	635
EarI	CTCTTC	1 cut(s)	635
Eco130I	CCWWGG	2 cut(s)	755, 783
Eco32I	GATATC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	739
Eco57I	CTGAAG	2 cut(s)	257, 659
EcoO109I	RGGNCCY	1 cut(s)	739
EcoRV	GATATC	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	755, 783
ErhI	CCWWGG	2 cut(s)	755, 783
FaeI	CATG	1 cut(s)	737
FaiI	YATR	9 cut(s)	176, 204, 353, 414, 446, 465, 705, 735, 805
FalI	AAGNNNNNCTT	4 cut(s)	149, 181, 255, 287
FatI	CATG	1 cut(s)	733
FauI	CCCGC	1 cut(s)	58
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	4 cut(s)	12, 505, 533, 594
Fsp4HI	GCNGC	4 cut(s)	12, 505, 533, 594
GlaI	GCGC	2 cut(s)	77, 83
GluI	GCNGC	4 cut(s)	12, 505, 533, 594
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	2 cut(s)	78, 84
Hin1II	CATG	1 cut(s)	737
Hin6I	GCGC	2 cut(s)	76, 82
HinP1I	GCGC	2 cut(s)	76, 82
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	6 cut(s)	46, 251, 403, 551, 557, 584
HpaII	CCGG	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188III	TCNNGA	4 cut(s)	166, 186, 248, 734
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	1 cut(s)	671
HpyAV	CCTTC	2 cut(s)	163, 546
HpyCH4III	ACNGT	2 cut(s)	482, 516
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	7 cut(s)	220, 314, 355, 397, 566, 620, 767
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	7 cut(s)	126, 327, 377, 553, 586, 597, 647
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	737
HspAI	GCGC	2 cut(s)	76, 82
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	382, 486
LmnI	GCTCC	3 cut(s)	46, 73, 303
LpnPI	CCDG	9 cut(s)	36, 70, 92, 153, 171, 214, 261, 271, 306
Lsp1109I	GCAGC	3 cut(s)	516, 519, 580
LweI	GCATC	1 cut(s)	171
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	2 cut(s)	384, 488
MboI	GATC	2 cut(s)	382, 486
MboII	GAAGA	3 cut(s)	289, 560, 652
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	6 cut(s)	29, 304, 348, 417, 626, 691
MlyI	GAGTC	4 cut(s)	55, 260, 545, 578
MseI	TTAA	2 cut(s)	344, 491
MspI	CCGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	2 cut(s)	382, 486
NlaIII	CATG	1 cut(s)	737
NlaIV	GGNNCC	5 cut(s)	42, 437, 741, 761, 789
NmuCI	GTSAC	1 cut(s)	121
PagI	TCATGA	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 675
PfeI	GAWTC	2 cut(s)	403, 557
PflFI	GACNNNGTC	1 cut(s)	671
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	4 cut(s)	13, 506, 534, 595
PleI	GAGTC	4 cut(s)	54, 259, 545, 578
PpsI	GAGTC	4 cut(s)	54, 259, 545, 578
PpuMI	RGGWCCY	1 cut(s)	739
Psp5II	RGGWCCY	1 cut(s)	739
PspN4I	GGNNCC	5 cut(s)	42, 437, 741, 761, 789
PspPI	GGNCC	2 cut(s)	137, 739
PspPPI	RGGWCCY	1 cut(s)	739
PstI	CTGCAG	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	593
PsyI	GACNNNGTC	1 cut(s)	671
RsaI	GTAC	3 cut(s)	227, 366, 513
RsaNI	GTAC	3 cut(s)	226, 365, 512
SalI	GTCGAC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	344, 491
SatI	GCNGC	4 cut(s)	12, 505, 533, 594
Sau3AI	GATC	2 cut(s)	382, 486
Sau96I	GGNCC	2 cut(s)	137, 739
SchI	GAGTC	4 cut(s)	55, 260, 545, 578
SduI	GDGCHC	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	739
Sse9I	AATT	6 cut(s)	29, 304, 348, 417, 626, 691
SsiI	CCGC	1 cut(s)	65
StyI	CCWWGG	2 cut(s)	755, 783
TaaI	ACNGT	2 cut(s)	482, 516
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	2 cut(s)	27, 254
TasI	AATT	6 cut(s)	29, 304, 348, 417, 626, 691
TatI	WGTACW	2 cut(s)	225, 364
TfiI	GAWTC	2 cut(s)	403, 557
Tru1I	TTAA	2 cut(s)	344, 491
Tru9I	TTAA	2 cut(s)	344, 491
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	4 cut(s)	11, 504, 532, 593
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	232, 351
Tth111I	GACNNNGTC	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	739
XapI	RAATTY	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.