Rroxscaffold_2G00124310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013697
Physical Location & Seq
Forward (+)
58552791 .. 58553336
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00124310.1

Sequence Viewer

Length: 546 bp
ATGGCATGGAATTTTCCTATCCTTGAGGATCAAACGGCCAATATATCATCATATCCTGCAGTGTATGACCAGATCAGCTTTCCTTGGAACTTTGGAGCCTGCACATCGCCTTTAGTCCCCGGCTTCCTTGAGAAACCAAATCAGCTACCATCATCGTCTTCAGAAGTCTCTGAACTTTCAGAGTTTCAGAGCTCCTCGAGTCTCAACCTTCAGCCACCATCATCGGCTTCAACCTCCAAACCTTCATCGTCTTCAAACTCCAAACCTCCGTCTCCTATCCAATCTTCTGCCAAAGTGGCAAACACAAGATCAGATTTGGCCAATCCATTCCCAATCCAATCTATTCCGGTCAGATTTCTTTACTGTCACTGGCTTTGCCCCCTCTCTTTTGCTTGTTTGATTGATCTGCAACCTCTCTTTGAAATTCAAAGGGGTTGTGTCGTTGTTTTTCTGCCCATCCTCTTCAATTTCGGTGCGGATCGAGAATTTCATCTGTATCTCACTCTCACTCTCTCAGTGCTTTCGAGGCTTCGACAGTTCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.05

Weight (kDa)

5.29

Isoelectric Point (pI)

78.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013697)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11361
malus_domestica MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica Prupe.6G278300_v2.0.a1
pyrus_communis pycom04g13920 pycom12g15940
rosa_chinensis RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata RLG00000024820
rosa_multiflora Rmu_sc0000766.1_g000026
rosa_roxburghii Rroxscaffold_2G00124310
rosa_rugosa Rorug03G0060900
rosa_samantha Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana Rw3G010060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 476
AclWI GGATC 2 cut(s) 36, 486
AcoI YGGCCR 2 cut(s) 36, 318
AcsI RAATTY 3 cut(s) 10, 423, 485
AcuI CTGAAG 2 cut(s) 144, 194
AgsI TTSAA 5 cut(s) 231, 255, 422, 428, 466
AluBI AGCT 3 cut(s) 78, 145, 192
AluI AGCT 3 cut(s) 78, 145, 192
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 3 cut(s) 172, 206, 276
AlwI GGATC 2 cut(s) 36, 486
Ama87I CYCGRG 1 cut(s) 196
AoxI GGCC 2 cut(s) 36, 318
ApoI RAATTY 3 cut(s) 10, 423, 485
AsuC2I CCSGG 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 196
BalI TGGCCA 1 cut(s) 320
BanII GRGCYC 1 cut(s) 194
BbsI GAAGAC 2 cut(s) 150, 243
Bbv12I GWGCWC 1 cut(s) 194
BccI CCATC 3 cut(s) 157, 226, 464
BceAI ACGGC 1 cut(s) 51
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 3 cut(s) 172, 206, 276
BfaI CTAG 1 cut(s) 544
BfmI CTRYAG 1 cut(s) 57
BglI GCCNNNNNGGC 1 cut(s) 296
Bme1390I CCNGG 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 120
BpiI GAAGAC 2 cut(s) 150, 243
BpuEI CTTGAG 2 cut(s) 44, 149
BpuMI CCSGG 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 83, 118
BsaWI WCCGGW 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 374
BseDI CCNNGG 2 cut(s) 83, 118
BseGI GGATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 85
BshFI GGCC 2 cut(s) 38, 320
BsiHKAI GWGCWC 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 2 cut(s) 120, 347
BslFI GGGAC 1 cut(s) 101
BsmAI GTCTC 3 cut(s) 172, 206, 276
BsmBI CGTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 2 cut(s) 38, 320
BsoBI CYCGRG 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 5 cut(s) 28, 72, 308, 403, 478
BspACI CCGC 1 cut(s) 476
BspANI GGCC 2 cut(s) 38, 320
BspCNI CTCAG 1 cut(s) 527
BspLI GGNNCC 1 cut(s) 97
BspMAI CTGCAG 1 cut(s) 61
BspPI GGATC 2 cut(s) 36, 486
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 2 cut(s) 83, 118
BssMI GATC 5 cut(s) 28, 72, 308, 403, 478
BssT1I CCWWGG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 365, 537
Bst6I CTCTTC 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 514
BstF5I GGATG 1 cut(s) 456
BstKTI GATC 5 cut(s) 31, 75, 311, 406, 481
BstMAI GTCTC 3 cut(s) 172, 206, 276
BstMBI GATC 5 cut(s) 28, 72, 308, 403, 478
BstMWI GCNNNNNNNGC 2 cut(s) 296, 526
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 57
BstV2I GAAGAC 2 cut(s) 150, 243
BsuRI GGCC 2 cut(s) 38, 320
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 456
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 3 cut(s) 66, 367, 522
Cac8I GCNNGC 1 cut(s) 100
CviAII CATG 1 cut(s) 6
DdeI CTNAG 1 cut(s) 514
DpnI GATC 5 cut(s) 30, 74, 310, 405, 480
DpnII GATC 5 cut(s) 28, 72, 308, 403, 478
EaeI YGGCCR 2 cut(s) 36, 318
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Ecl136II GAGCTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 192
Eco57I CTGAAG 2 cut(s) 144, 194
Eco88I CYCGRG 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 83
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 1 cut(s) 9
FaiI YATR 4 cut(s) 7, 44, 52, 66
FaqI GGGAC 1 cut(s) 101
FatI CATG 1 cut(s) 5
FokI GGATG 1 cut(s) 443
FriOI GRGCYC 1 cut(s) 194
FspBI CTAG 1 cut(s) 544
HaeIII GGCC 2 cut(s) 38, 320
HapII CCGG 2 cut(s) 120, 347
Hin1II CATG 1 cut(s) 9
HinfI GANTC 1 cut(s) 199
HpaII CCGG 2 cut(s) 120, 347
Hpy188I TCNGA 6 cut(s) 163, 172, 181, 189, 313, 353
Hpy188III TCNNGA 1 cut(s) 482
HpyAV CCTTC 2 cut(s) 218, 252
HpyCH4III ACNGT 2 cut(s) 365, 537
HpyCH4V TGCA 3 cut(s) 59, 102, 409
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 526
HpyF3I CTNAG 1 cut(s) 514
Hsp92II CATG 1 cut(s) 9
Kzo9I GATC 5 cut(s) 28, 72, 308, 403, 478
LmnI GCTCC 2 cut(s) 95, 197
LpnPI CCDG 6 cut(s) 69, 83, 112, 133, 355, 360
MaeI CTAG 1 cut(s) 544
MaeIII GTNAC 1 cut(s) 365
MalI GATC 5 cut(s) 30, 74, 310, 405, 480
MboI GATC 5 cut(s) 28, 72, 308, 403, 478
MboII GAAGA 4 cut(s) 150, 243, 276, 454
MhlI GDGCHC 1 cut(s) 194
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 4 cut(s) 10, 423, 466, 485
MluNI TGGCCA 1 cut(s) 320
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 8 cut(s) 19, 205, 244, 276, 392, 423, 470, 519
Mox20I TGGCCA 1 cut(s) 320
MscI TGGCCA 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 320
MspI CCGG 2 cut(s) 120, 347
MspR9I CCNGG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 296, 526
NciI CCSGG 1 cut(s) 120
NdeII GATC 5 cut(s) 28, 72, 308, 403, 478
NlaIII CATG 1 cut(s) 9
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 365
PaeR7I CTCGAG 1 cut(s) 196
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
Psp124BI GAGCTC 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 97
PspXI VCTCGAGB 1 cut(s) 196
PstI CTGCAG 1 cut(s) 61
SacI GAGCTC 1 cut(s) 194
Sau3AI GATC 5 cut(s) 28, 72, 308, 403, 478
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 194
SetI ASST 8 cut(s) 80, 147, 194, 210, 236, 244, 268, 415
SfcI CTRYAG 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 196
SlaI CTCGAG 1 cut(s) 196
SmlI CTYRAG 3 cut(s) 23, 128, 196
SmoI CTYRAG 3 cut(s) 23, 128, 196
Sse9I AATT 4 cut(s) 10, 423, 466, 485
SsiI CCGC 1 cut(s) 476
SspMI CTAG 1 cut(s) 544
SstI GAGCTC 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 365, 537
TaqI TCGA 5 cut(s) 197, 481, 524, 532, 540
TasI AATT 4 cut(s) 10, 423, 466, 485
TscAI CASTG 3 cut(s) 66, 374, 522
TseFI GTSAC 1 cut(s) 365
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 234, 479
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 3 cut(s) 66, 374, 522
XapI RAATTY 3 cut(s) 10, 423, 485
XhoI CTCGAG 1 cut(s) 196
XspI CTAG 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.