Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013697

Physical Location & Seq

Genomic Coordinates Reverse (-)

10513521 .. 10515071

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42932

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGATTCGAAAAAATGCTTAGATGCCTCTGCAGGGAACAAGGAACGGTTGCGTTGGACGCAGGAGCTACACGATATGTTCGTCGAGGCAGTTACCAAGCTTGGTGGCCCTGATAGGGCAACACCAAAGGGTATTCTGAAGGCTATGGGAGTTCCTGGACTGACCATCTACCATATCAAAAGCCATTTGCAGAAGTACAGGATCTCAAAATTTGTCCCAGAGACTACCAGTAGCAATCTTCAGAGGAAAAACATTTCAGAAATACTGCCTAACTTCGGCACAACATCTGCTGCTCAGCTCAATGAAGCGTTACATCTCATGCATATACAAGTACAAAGGAGATTGAGTGATCAACTTGAGGTATATACTCGATCATATCGAAATTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

130

Amino Acids

14.86

Weight (kDa)

9.79

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 67	2.3e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11361
malus_domestica	MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica	Prupe.6G278300_v2.0.a1
pyrus_communis	pycom04g13920 pycom12g15940
rosa_chinensis	RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata	RLG00000024820
rosa_multiflora	Rmu_sc0000766.1_g000026
rosa_roxburghii	Rroxscaffold_2G00124310
rosa_rugosa	Rorug03G0060900
rosa_samantha	Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana	Rw3G010060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	2 cut(s)	158, 224
AfaI	GTAC	2 cut(s)	197, 333
AfiI	CCNNNNNNNGG	3 cut(s)	33, 115, 275
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	3 cut(s)	67, 100, 298
AluI	AGCT	3 cut(s)	67, 100, 298
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	107
AsuII	TTCGAA	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	156
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	1 cut(s)	291
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	13
Bpu1102I	GCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 115, 275
Bse1I	ACTGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	3 cut(s)	33, 115, 275
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	277
BshFI	GGCC	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	33, 115, 275
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	201, 349, 371
Bsp1720I	GCTNAGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	228
BssMI	GATC	3 cut(s)	201, 349, 371
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	48
BstBI	TTCGAA	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	19, 294
BstKTI	GATC	3 cut(s)	204, 352, 374
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	3 cut(s)	201, 349, 371
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	107
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	196, 332
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	6 cut(s)	67, 100, 108, 143, 183, 298
CviKI_1	RGCY	6 cut(s)	67, 100, 108, 143, 183, 298
CviQI	GTAC	2 cut(s)	196, 332
DdeI	CTNAG	2 cut(s)	19, 294
DpnI	GATC	3 cut(s)	203, 351, 373
DpnII	GATC	3 cut(s)	201, 349, 371
Eco57I	CTGAAG	2 cut(s)	158, 224
EcoRII	CCWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	324
FaeI	CATG	1 cut(s)	322
FaiI	YATR	9 cut(s)	77, 146, 174, 320, 324, 326, 364, 366, 376
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	108
HgaI	GACGC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	1 cut(s)	5
Hpy188I	TCNGA	3 cut(s)	138, 243, 259
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	32, 190, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	19, 294
Hsp92II	CATG	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	201, 349, 371
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	8 cut(s)	18, 47, 123, 141, 168, 184, 231, 241
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	13
MaeIII	GTNAC	2 cut(s)	91, 309
MalI	GATC	3 cut(s)	203, 351, 373
MboI	GATC	3 cut(s)	201, 349, 371
MboII	GAAGA	1 cut(s)	230
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	2 cut(s)	209, 382
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	4 cut(s)	37, 79, 237, 352
Mph1103I	ATGCAT	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	3 cut(s)	201, 349, 371
NlaIII	CATG	1 cut(s)	322
NsiI	ATGCAT	1 cut(s)	324
NspV	TTCGAA	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 376
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	201
RsaI	GTAC	2 cut(s)	197, 333
RsaNI	GTAC	2 cut(s)	196, 332
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	3 cut(s)	201, 349, 371
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	4 cut(s)	69, 102, 300, 363
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	2 cut(s)	209, 382
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	48
TaqI	TCGA	4 cut(s)	8, 84, 370, 379
TasI	AATT	2 cut(s)	209, 382
TatI	WGTACW	2 cut(s)	195, 331
TfiI	GAWTC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	318
XapI	RAATTY	1 cut(s)	209
Zsp2I	ATGCAT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.