Rw3G010060
MYB Family

MYB-CC type transfactor, LHEQLE motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013697
Physical Location & Seq
Reverse (-)
9676592 .. 9678550
1959 bp
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UTR
Exon/CDS
Intron
Rw3G010060.1

Sequence Viewer

Length: 564 bp
ATGGGTTCGGCAAAATGCTTAGATGCCTCTGCAGGGAACAAGGAACGGTTGCGTTGGACGCAGGAGCTACACGATATGTTCGTCGAGGCAGTTACCAAGCTTGGTGGCCCTGATAGGGCAACACCAAAGGGTATTCTGAAGGCTATGGGAGTTTCTGGACTGACCATCTACCATATCAAAAGCCATTTGCAGAAGTACAGGATCTCAAAATTTGTTCCAGAGACTACCAATCGGAGTCGCAATGATAACCGCCCGACCTTTACGAAACCTATCAAACCCATATCTAGAAAATCGCTGCCTTCTCTCTGTGAGGAATCCGAATCAAATGCTAAGGACTTCGGGACGTCTGCTGAGAAGACCGAGATTCAATCCTCTGGAGAAGAATTCCAAGCTTTGAAGAAGCAAAGGGTACATAATCAAAACGACGACAACATGGCATGGAATTTTCCTATCATTGAGGATCAAACGGCCAATATATCATCATATCCTGCAGTGTATGATCAGATCAACTTTCCTTGGAACTTTGGAGCCTGCACATCGCCTTTAGTCCCCAGTTTCCTATAA

Protein Analysis

187

Amino Acids

20.98

Weight (kDa)

8.73

Isoelectric Point (pI)

57.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 16 - 67 4.9e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013697)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11361
malus_domestica MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica Prupe.6G278300_v2.0.a1
pyrus_communis pycom04g13920 pycom12g15940
rosa_chinensis RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata RLG00000024820
rosa_multiflora Rmu_sc0000766.1_g000026
rosa_roxburghii Rroxscaffold_2G00124310
rosa_rugosa Rorug03G0060900
rosa_samantha Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana Rw3G010060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 347
AciI CCGC 1 cut(s) 250
AclWI GGATC 2 cut(s) 209, 468
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 3 cut(s) 209, 383, 442
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 344
AfaI GTAC 2 cut(s) 197, 411
AfiI CCNNNNNNNGG 2 cut(s) 33, 115
AgsI TTSAA 2 cut(s) 368, 397
AluBI AGCT 3 cut(s) 67, 100, 392
AluI AGCT 3 cut(s) 67, 100, 392
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 209, 468
AoxI GGCC 2 cut(s) 106, 468
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 3 cut(s) 209, 383, 442
AspS9I GGNCC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 282
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 483
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BclI TGATCA 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 285
BfmI CTRYAG 2 cut(s) 30, 489
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 529
BmrI ACTGGG 1 cut(s) 546
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 546
BpiI GAAGAC 1 cut(s) 362
BpmI CTGGAG 1 cut(s) 396
Bpu10I CCTNAGC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 515
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 115
Bse1I ACTGG 1 cut(s) 552
Bse3DI GCAATG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 515
BseLI CCNNNNNNNGG 2 cut(s) 33, 115
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 552
BseXI GCAGC 1 cut(s) 282
BsgI GTGCAG 1 cut(s) 517
BshFI GGCC 2 cut(s) 108, 470
BslFI GGGAC 2 cut(s) 355, 533
BslI CCNNNNNNNGG 2 cut(s) 33, 115
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 2 cut(s) 355, 533
BsnI GGCC 2 cut(s) 108, 470
Bsp143I GATC 4 cut(s) 201, 460, 499, 504
BspACI CCGC 1 cut(s) 250
BspANI GGCC 2 cut(s) 108, 470
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 529
BspMAI CTGCAG 2 cut(s) 34, 493
BspPI GGATC 2 cut(s) 209, 468
BsrDI GCAATG 1 cut(s) 247
BsrI ACTGG 1 cut(s) 552
BssECI CCNNGG 1 cut(s) 515
BssMI GATC 4 cut(s) 201, 460, 499, 504
BssNI GRCGYC 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 515
Bst4CI ACNGT 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 532
BstDEI CTNAG 3 cut(s) 19, 330, 351
BstKTI GATC 4 cut(s) 204, 463, 502, 507
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 4 cut(s) 201, 460, 499, 504
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstSFI CTRYAG 2 cut(s) 30, 489
BstV1I GCAGC 1 cut(s) 282
BstV2I GAAGAC 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BsuRI GGCC 2 cut(s) 108, 470
BtgZI GCGATG 1 cut(s) 522
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 1 cut(s) 498
Cac8I GCNNGC 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 67
Csp6I GTAC 2 cut(s) 196, 410
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 2 cut(s) 433, 438
CviJI RGCY 8 cut(s) 67, 100, 108, 143, 183, 392, 470, 530
CviKI_1 RGCY 8 cut(s) 67, 100, 108, 143, 183, 392, 470, 530
CviQI GTAC 2 cut(s) 196, 410
DdeI CTNAG 3 cut(s) 19, 330, 351
DpnI GATC 4 cut(s) 203, 462, 501, 506
DpnII GATC 4 cut(s) 201, 460, 499, 504
EaeI YGGCCR 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 383
EcoT14I CCWWGG 1 cut(s) 515
ErhI CCWWGG 1 cut(s) 515
FaeI CATG 2 cut(s) 436, 441
FaqI GGGAC 2 cut(s) 355, 533
FatI CATG 2 cut(s) 432, 437
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 1 cut(s) 285
GluI GCNGC 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 2 cut(s) 108, 470
HgaI GACGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 2 cut(s) 436, 441
HindIII AAGCTT 2 cut(s) 98, 390
HinfI GANTC 4 cut(s) 235, 314, 320, 364
Hpy188I TCNGA 4 cut(s) 138, 234, 319, 504
Hpy188III TCNNGA 5 cut(s) 156, 218, 285, 340, 375
Hpy99I CGWCG 2 cut(s) 86, 428
HpyAV CCTTC 2 cut(s) 133, 309
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 4 cut(s) 32, 190, 491, 534
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 3 cut(s) 19, 330, 351
HpySE526I ACGT 1 cut(s) 344
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 2 cut(s) 436, 441
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 4 cut(s) 201, 460, 499, 504
LmnI GCTCC 2 cut(s) 64, 527
LpnPI CCDG 9 cut(s) 18, 47, 123, 141, 184, 231, 360, 501, 544
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 91
MalI GATC 4 cut(s) 203, 462, 501, 506
MboI GATC 4 cut(s) 201, 460, 499, 504
MboII GAAGA 3 cut(s) 367, 392, 409
MflI RGATCY 1 cut(s) 201
MluCI AATT 3 cut(s) 209, 383, 442
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 5 cut(s) 37, 79, 304, 382, 451
MwoI GCNNNNNNNGC 1 cut(s) 58
NdeII GATC 4 cut(s) 201, 460, 499, 504
NlaIII CATG 2 cut(s) 436, 441
NlaIV GGNNCC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 3 cut(s) 314, 320, 364
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 529
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 2 cut(s) 34, 493
PsuI RGATCY 1 cut(s) 201
RsaI GTAC 2 cut(s) 197, 411
RsaNI GTAC 2 cut(s) 196, 410
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 4 cut(s) 201, 460, 499, 504
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 1 cut(s) 244
SetI ASST 6 cut(s) 69, 102, 260, 271, 347, 394
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 2 cut(s) 30, 489
Sse9I AATT 3 cut(s) 209, 383, 442
SsiI CCGC 1 cut(s) 250
SspMI CTAG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 515
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 1 cut(s) 347
TaqI TCGA 1 cut(s) 84
TaqII GACCGA 1 cut(s) 374
TasI AATT 3 cut(s) 209, 383, 442
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 3 cut(s) 314, 320, 364
TscAI CASTG 1 cut(s) 498
TseI GCWGC 1 cut(s) 295
TspRI CASTG 1 cut(s) 498
XapI RAATTY 3 cut(s) 209, 383, 442
XbaI TCTAGA 1 cut(s) 284
XspI CTAG 1 cut(s) 285
ZraI GACGTC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.