Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013697

Physical Location & Seq

Genomic Coordinates Reverse (-)

10513059 .. 10513515

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42931

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTACGCACGTACTAATATTGGTTCTCTATTTAAGGTGCACAAGAGCTTGAAGCAAAAATTTGAAGCCCAGGGAAGGTTCCTTGATACAATTTCAGCAGATCGGAGTCGCAATGATAACCGCCCGACCTTTACGAAACCTATCAAACCCATATCTAGAAAATCGCTGCCTTCTCTCTGTGAGGAATCCGAATCAAATGCTAAGGACTTCGGGACGTCTGACTCGGACGCTGAGAAGACCGAGATTCAATCCTCTGGAGAAGAATTCCAAGCTTTGAAGAAGCAAAGGGTACATAATCAAAACGACGACAACATGGCATGGAATTTTCCTATCATTGAGGATCAAACGGCCAATATATCATCATATCCTGCAGTGTGTGATCAGATCAGCTTTCCTTGGAACTTTGGAGCCTGCACATCGCCTTTAGTCCCCAGTTTCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

147

Amino Acids

16.58

Weight (kDa)

6.12

Isoelectric Point (pI)

65.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11361
malus_domestica	MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica	Prupe.6G278300_v2.0.a1
pyrus_communis	pycom04g13920 pycom12g15940
rosa_chinensis	RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata	RLG00000024820
rosa_multiflora	Rmu_sc0000766.1_g000026
rosa_roxburghii	Rroxscaffold_2G00124310
rosa_rugosa	Rorug03G0060900
rosa_samantha	Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana	Rw3G010060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	1 cut(s)	348
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	3 cut(s)	59, 263, 322
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	3 cut(s)	5, 13, 291
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	4 cut(s)	52, 65, 248, 277
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	3 cut(s)	48, 272, 390
AluI	AGCT	3 cut(s)	48, 272, 390
Alw21I	GWGCWC	1 cut(s)	42
Alw44I	GTGCAC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	348
AoxI	GGCC	1 cut(s)	348
ApaLI	GTGCAC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	3 cut(s)	59, 263, 322
BaeGI	GKGCMC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	153
BceAI	ACGGC	1 cut(s)	363
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	1 cut(s)	71
BclI	TGATCA	1 cut(s)	379
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	71
BmiI	GGNNCC	2 cut(s)	80, 409
BmrFI	CCNGG	1 cut(s)	71
BmrI	ACTGGG	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	3 cut(s)	69, 70, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	3 cut(s)	69, 70, 395
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	432
BseSI	GKGCMC	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	397
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	42
BslFI	GGGAC	2 cut(s)	226, 413
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	226, 413
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	100, 340, 379, 384
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	80, 409
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	432
BssECI	CCNNGG	3 cut(s)	69, 70, 395
BssMI	GATC	4 cut(s)	100, 340, 379, 384
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	2 cut(s)	201, 231
BstKTI	GATC	4 cut(s)	103, 343, 382, 387
BstMBI	GATC	4 cut(s)	100, 340, 379, 384
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	350
BtgZI	GCGATG	1 cut(s)	402
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	412
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	4, 12, 290
CviAII	CATG	2 cut(s)	313, 318
CviJI	RGCY	6 cut(s)	48, 68, 272, 350, 390, 410
CviKI_1	RGCY	6 cut(s)	48, 68, 272, 350, 390, 410
CviQI	GTAC	3 cut(s)	4, 12, 290
DdeI	CTNAG	2 cut(s)	201, 231
DpnI	GATC	4 cut(s)	102, 342, 381, 386
DpnII	GATC	4 cut(s)	100, 340, 379, 384
EaeI	YGGCCR	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	2 cut(s)	316, 321
FaiI	YATR	7 cut(s)	152, 294, 314, 319, 356, 364, 442
FaqI	GGGAC	2 cut(s)	226, 413
FatI	CATG	2 cut(s)	312, 317
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	350
HgaI	GACGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	316, 321
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	5 cut(s)	106, 185, 191, 221, 244
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	5 cut(s)	105, 190, 220, 226, 384
Hpy188III	TCNNGA	3 cut(s)	156, 211, 255
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	69, 180
HpyCH4IV	ACGT	2 cut(s)	10, 215
HpyCH4V	TGCA	3 cut(s)	40, 371, 414
HpyF3I	CTNAG	2 cut(s)	201, 231
HpySE526I	ACGT	2 cut(s)	10, 215
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	316, 321
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	100, 340, 379, 384
LmnI	GCTCC	1 cut(s)	407
LpnPI	CCDG	5 cut(s)	56, 83, 240, 381, 424
Lsp1109I	GCAGC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	10, 215
MalI	GATC	4 cut(s)	102, 342, 381, 386
MboI	GATC	4 cut(s)	100, 340, 379, 384
MboII	GAAGA	3 cut(s)	247, 272, 289
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	4 cut(s)	59, 90, 263, 322
MlyI	GAGTC	2 cut(s)	115, 215
MnlI	CCTC	3 cut(s)	175, 262, 331
MseI	TTAA	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
NdeII	GATC	4 cut(s)	100, 340, 379, 384
NlaIII	CATG	2 cut(s)	316, 321
NlaIV	GGNNCC	2 cut(s)	80, 409
PasI	CCCWGGG	1 cut(s)	70
PfeI	GAWTC	3 cut(s)	185, 191, 244
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	2 cut(s)	114, 215
PpsI	GAGTC	2 cut(s)	114, 215
Ppu21I	YACGTR	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	80, 409
PstI	CTGCAG	1 cut(s)	373
RsaI	GTAC	3 cut(s)	5, 13, 291
RsaNI	GTAC	3 cut(s)	4, 12, 290
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	4 cut(s)	100, 340, 379, 384
SchI	GAGTC	2 cut(s)	115, 215
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	9 cut(s)	13, 39, 50, 80, 131, 142, 218, 274, 392
SfcI	CTRYAG	1 cut(s)	369
Sse9I	AATT	4 cut(s)	59, 90, 263, 322
SsiI	CCGC	1 cut(s)	121
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	395
TaiI	ACGT	2 cut(s)	13, 218
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	4 cut(s)	59, 90, 263, 322
TfiI	GAWTC	3 cut(s)	185, 191, 244
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	378
TseI	GCWGC	1 cut(s)	166
TspRI	CASTG	1 cut(s)	378
VneI	GTGCAC	1 cut(s)	38
XapI	RAATTY	3 cut(s)	59, 263, 322
XbaI	TCTAGA	1 cut(s)	155
XspI	CTAG	1 cut(s)	156
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.