Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0013697

Physical Location & Seq

Genomic Coordinates Forward (+)

24211959 .. 24213634

Gene Structure 1676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1154300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGTTCGAGACGATCAGAGAGCTCTGCGGCAAACAAGGATCGCCTGCGGTGGACGCAAGAGCTGCATGATAGGTTTGTGGAGGCAGTTACTAAGCTTGGTGGCCCTGATCGGGCAACACCAAAGGGTATCTTGAAAGCTATGAGTGTTTCCGGACTGACCATCTACCACATCAAAAGCCATTTGCAGAAGTACAGAATCTCAAAGTTTATTCCAGAGTCGACGAACACTCAGCTCAATGAAGCCTTCAAAATTATGCAGATACAGGTACACAGGAGACTCAGTGATCAACATGAGGTGCAAAAGAACCTGCAACATAAACTTGAATCCCAAGGAAGGTTTCTTGAAAGATATTCAGCAGAACGCCAAAACACAAACAAGAACCGTCCTATCGTGATCACAAAACCTAGAAAAGCACCCTTGTCGAAGACATCGCTCCCTTCTCTCTGTGACCACTCGGAATCAAATGCAAAAGACTTTGCATCCGACTCGGAGCCTGACAGAAGCGAAACACAGTCATCTGCAGAACAATTCCAAACTCTGAAGAAGCTCAGGCTGCACCATCATCAAAATGACCCTAATGTCCAGTTTGCACTTAACTCAGAGTTGTATACTGCTCAAAGCCACAGCTTGCTTCTCCCTCATGAGGAGGACCATATCAGCTTTCCTTGGAACTTTGCAGCCTGCTCATCTCCTTTAGCAGTGTCCAGCTGCTTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

241

Amino Acids

27.43

Weight (kDa)

9.36

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 66	1.9e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	78 - 117	1.2e-10	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11361
malus_domestica	MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica	Prupe.6G278300_v2.0.a1
pyrus_communis	pycom04g13920 pycom12g15940
rosa_chinensis	RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata	RLG00000024820
rosa_multiflora	Rmu_sc0000766.1_g000026
rosa_roxburghii	Rroxscaffold_2G00124310
rosa_rugosa	Rorug03G0060900
rosa_samantha	Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana	Rw3G010060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	581
Acc36I	ACCTGC	1 cut(s)	318
AccI	GTMKAC	2 cut(s)	221, 611
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	2 cut(s)	29, 49
AclWI	GGATC	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	563
AfaI	GTAC	2 cut(s)	194, 270
AfiI	CCNNNNNNNGG	3 cut(s)	112, 336, 646
AgsI	TTSAA	4 cut(s)	136, 250, 326, 347
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AluBI	AGCT	9 cut(s)	24, 64, 97, 140, 235, 550, 630, 663, 711
AluI	AGCT	9 cut(s)	24, 64, 97, 140, 235, 550, 630, 663, 711
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	4, 271
AlwI	GGATC	1 cut(s)	48
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	4 cut(s)	64, 556, 680, 711
AspS9I	GGNCC	2 cut(s)	104, 652
AvaII	GGWCC	1 cut(s)	652
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	4 cut(s)	51, 543, 692, 698
BccI	CCATC	2 cut(s)	170, 570
BcgI	CGANNNNNNTGC	4 cut(s)	405, 439, 471, 505
BclI	TGATCA	2 cut(s)	286, 396
BcoDI	GTCTC	2 cut(s)	4, 271
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	522
BfuAI	ACCTGC	1 cut(s)	318
BisI	GCNGC	5 cut(s)	30, 65, 557, 681, 712
BlsI	GCNGC	5 cut(s)	31, 66, 558, 682, 713
Bme18I	GGWCC	1 cut(s)	652
BmgT120I	GGNCC	2 cut(s)	104, 652
BmiI	GGNNCC	1 cut(s)	495
BmsI	GCATC	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	434
Bpu10I	CCTNAGC	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	331, 668
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 336, 646
Bse1I	ACTGG	1 cut(s)	586
BseAI	TCCGGA	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	331, 668
BseGI	GGATG	1 cut(s)	482
BseLI	CCNNNNNNNGG	3 cut(s)	112, 336, 646
BseMII	CTCAG	4 cut(s)	245, 295, 565, 615
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	4 cut(s)	51, 543, 692, 698
BsgI	GTGCAG	1 cut(s)	542
BshFI	GGCC	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	112, 336, 646
BsmAI	GTCTC	2 cut(s)	4, 271
BsmBI	CGTCTC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	5 cut(s)	14, 40, 109, 286, 396
BspACI	CCGC	2 cut(s)	29, 49
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	4 cut(s)	244, 294, 564, 614
BspEI	TCCGGA	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	1 cut(s)	495
BspMAI	CTGCAG	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	2 cut(s)	331, 668
BssMI	GATC	5 cut(s)	14, 40, 109, 286, 396
BssNAI	GTATAC	1 cut(s)	612
BssT1I	CCWWGG	2 cut(s)	331, 668
Bst1107I	GTATAC	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	386, 516
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstC8I	GCNNGC	3 cut(s)	47, 632, 685
BstDEI	CTNAG	5 cut(s)	93, 231, 281, 551, 601
BstF5I	GGATG	1 cut(s)	482
BstKTI	GATC	5 cut(s)	17, 43, 112, 289, 399
BstMAI	GTCTC	2 cut(s)	4, 271
BstMBI	GATC	5 cut(s)	14, 40, 109, 286, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 64, 556
BstSFI	CTRYAG	1 cut(s)	522
BstV1I	GCAGC	4 cut(s)	51, 543, 692, 698
BstV2I	GAAGAC	1 cut(s)	434
BstZ17I	GTATAC	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	482
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	2 cut(s)	289, 708
BveI	ACCTGC	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	47, 632, 685
CciI	TCATGA	1 cut(s)	643
Cfr13I	GGNCC	2 cut(s)	104, 652
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	193, 269
CviAII	CATG	3 cut(s)	68, 293, 644
CviQI	GTAC	2 cut(s)	193, 269
DdeI	CTNAG	5 cut(s)	93, 231, 281, 551, 601
DpnI	GATC	5 cut(s)	16, 42, 111, 288, 398
DpnII	GATC	5 cut(s)	14, 40, 109, 286, 396
DrdI	GACNNNNNNGTC	1 cut(s)	581
DseDI	GACNNNNNNGTC	1 cut(s)	581
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	331, 668
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	652
Eco53kI	GAGCTC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	24
EcoT14I	CCWWGG	2 cut(s)	331, 668
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	2 cut(s)	331, 668
Esp3I	CGTCTC	1 cut(s)	4
FaeI	CATG	3 cut(s)	71, 296, 647
FaiI	YATR	9 cut(s)	69, 143, 257, 294, 318, 612, 645, 657, 721
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	3 cut(s)	67, 292, 643
FbaI	TGATCA	2 cut(s)	286, 396
FblI	GTMKAC	2 cut(s)	221, 611
Fnu4HI	GCNGC	5 cut(s)	30, 65, 557, 681, 712
FokI	GGATG	1 cut(s)	469
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	5 cut(s)	30, 65, 557, 681, 712
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	5 cut(s)	30, 65, 557, 681, 712
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	64
Hin1II	CATG	3 cut(s)	71, 296, 647
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	6 cut(s)	198, 218, 279, 326, 461, 488
HpaII	CCGG	1 cut(s)	153
Hpy166II	GTNNAC	4 cut(s)	54, 222, 271, 612
Hpy188I	TCNGA	6 cut(s)	19, 460, 487, 493, 543, 604
Hpy188III	TCNNGA	7 cut(s)	9, 133, 153, 215, 344, 394, 644
Hpy8I	GTNNAC	4 cut(s)	54, 222, 271, 612
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	3 cut(s)	256, 330, 450
HpyCH4III	ACNGT	2 cut(s)	386, 516
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 64, 556
HpyF3I	CTNAG	5 cut(s)	93, 231, 281, 551, 601
Hsp92II	CATG	3 cut(s)	71, 296, 647
Kpn2I	TCCGGA	1 cut(s)	152
Ksp22I	TGATCA	2 cut(s)	286, 396
Kzo9I	GATC	5 cut(s)	14, 40, 109, 286, 396
LmnI	GCTCC	2 cut(s)	441, 493
Lsp1109I	GCAGC	4 cut(s)	51, 543, 692, 698
LweI	GCATC	1 cut(s)	491
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	88, 449
MalI	GATC	5 cut(s)	16, 42, 111, 288, 398
MboI	GATC	5 cut(s)	14, 40, 109, 286, 396
MboII	GAAGA	2 cut(s)	439, 556
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	2 cut(s)	252, 530
MlyI	GAGTC	3 cut(s)	227, 273, 482
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	5 cut(s)	76, 289, 640, 643, 651
MroI	TCCGGA	1 cut(s)	152
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	711
MspI	CCGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	55, 64, 556
NdeII	GATC	5 cut(s)	14, 40, 109, 286, 396
NlaIII	CATG	3 cut(s)	71, 296, 647
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	1 cut(s)	449
PagI	TCATGA	1 cut(s)	643
PfeI	GAWTC	3 cut(s)	198, 326, 461
PkrI	GCNGC	5 cut(s)	31, 66, 558, 682, 713
PleI	GAGTC	3 cut(s)	226, 273, 482
PpsI	GAGTC	3 cut(s)	226, 273, 482
Psp124BI	GAGCTC	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	495
PspPI	GGNCC	2 cut(s)	104, 652
PstI	CTGCAG	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	711
RsaI	GTAC	2 cut(s)	194, 270
RsaNI	GTAC	2 cut(s)	193, 269
RseI	CAYNNNNRTG	1 cut(s)	570
SacI	GAGCTC	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	5 cut(s)	30, 65, 557, 681, 712
Sau3AI	GATC	5 cut(s)	14, 40, 109, 286, 396
Sau96I	GGNCC	2 cut(s)	104, 652
SchI	GAGTC	3 cut(s)	227, 273, 482
SduI	GDGCHC	1 cut(s)	26
SfaNI	GCATC	1 cut(s)	491
SfcI	CTRYAG	1 cut(s)	522
SinI	GGWCC	1 cut(s)	652
SmiMI	CAYNNNNRTG	1 cut(s)	570
Sse9I	AATT	2 cut(s)	252, 530
SsiI	CCGC	2 cut(s)	29, 49
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	26
StyI	CCWWGG	2 cut(s)	331, 668
TaaI	ACNGT	2 cut(s)	386, 516
TaqI	TCGA	3 cut(s)	8, 221, 425
TasI	AATT	2 cut(s)	252, 530
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	3 cut(s)	198, 326, 461
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	2 cut(s)	289, 708
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	4 cut(s)	64, 556, 680, 711
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	2 cut(s)	289, 708
VpaK11BI	GGWCC	1 cut(s)	652
XmiI	GTMKAC	2 cut(s)	221, 611
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.