Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013697

Physical Location & Seq

Genomic Coordinates Reverse (-)

233295 .. 237565

Gene Structure 4271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG001800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTATCAACCAAACGGTGCTCCTAGTTCAGGCTTAATCCAGAATAATTTGTTAGTCCATGGTCAATATTTAGACTGTGGCACCAATACAATGGACAATGTCAATGGAGCGAAAAGTCCCAGCAACTCTAATCTTGCCTCAAAGCAGCGACTGCGTTGGACACATGAGCTTCATGACCGCTTTGTTGATGCCGTGGCACAACTCGGTGGGCCAGATCGTGCAACACCCAAAGGTGTTTTGAGAGTGATGGGTGTACAAGGTTTAACCATATACCATGTAAAGAGCCATTTACAGGTATACAAAATTGTTCCTGTCCAAAAATTTTCTTTCCTTTTAATCTGTTTTATTTTTATTTTAGTTTTCCTTTTCGCTTTCCACTTTTGGTGTGAGATGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

132

Amino Acids

14.82

Weight (kDa)

9.15

Isoelectric Point (pI)

24.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	50 - 101	3.9e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11361
malus_domestica	MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica	Prupe.6G278300_v2.0.a1
pyrus_communis	pycom04g13920 pycom12g15940
rosa_chinensis	RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata	RLG00000024820
rosa_multiflora	Rmu_sc0000766.1_g000026
rosa_roxburghii	Rroxscaffold_2G00124310
rosa_rugosa	Rorug03G0060900
rosa_samantha	Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana	Rw3G010060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	320
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	29, 292
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	22
AlwNI	CAGNNNCTG	1 cut(s)	151
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	2 cut(s)	241, 385
BceAI	ACGGC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	24
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	82
BmsI	GCATC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	58, 192
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 292
BseDI	CCNNGG	2 cut(s)	58, 192
BseLI	CCNNNNNNNGG	2 cut(s)	29, 292
BseXI	GCAGC	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	119
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	2 cut(s)	29, 292
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp1407I	TGTACA	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	58, 192
BssMI	GATC	1 cut(s)	214
BssNAI	GTATAC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	58
Bst1107I	GTATAC	1 cut(s)	298
Bst4CI	ACNGT	2 cut(s)	17, 77
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstAUI	TGTACA	1 cut(s)	253
BstDSI	CCRYGG	2 cut(s)	58, 192
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstZ17I	GTATAC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	211
BtgI	CCRYGG	2 cut(s)	58, 192
CaiI	CAGNNNCTG	1 cut(s)	151
CciI	TCATGA	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	4 cut(s)	59, 164, 173, 275
CviJI	RGCY	4 cut(s)	33, 169, 211, 285
CviKI_1	RGCY	4 cut(s)	33, 169, 211, 285
CviQI	GTAC	1 cut(s)	254
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	4 cut(s)	62, 167, 176, 278
FaiI	YATR	7 cut(s)	60, 165, 174, 269, 271, 276, 298
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	4 cut(s)	58, 163, 172, 274
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	1 cut(s)	146
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	211
Hin1II	CATG	4 cut(s)	62, 167, 176, 278
Hpy166II	GTNNAC	2 cut(s)	254, 298
Hpy188III	TCNNGA	2 cut(s)	40, 173
Hpy8I	GTNNAC	2 cut(s)	254, 298
HpyCH4III	ACNGT	2 cut(s)	17, 77
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
Hsp92II	CATG	4 cut(s)	62, 167, 176, 278
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	25, 107
LpnPI	CCDG	6 cut(s)	15, 53, 133, 225, 278, 324
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	24
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	3 cut(s)	46, 303, 320
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	1 cut(s)	148
MseI	TTAA	3 cut(s)	35, 263, 335
MwoI	GCNNNNNNNGC	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	4 cut(s)	62, 167, 176, 278
NlaIV	GGNNCC	1 cut(s)	82
PagI	TCATGA	1 cut(s)	172
PflFI	GACNNNGTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	98
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SaqAI	TTAA	3 cut(s)	35, 263, 335
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	4 cut(s)	171, 235, 262, 297
SfaNI	GCATC	1 cut(s)	178
Sse9I	AATT	3 cut(s)	46, 303, 320
SsiI	CCGC	1 cut(s)	178
SspI	AATATT	1 cut(s)	68
SspMI	CTAG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	2 cut(s)	17, 77
TasI	AATT	3 cut(s)	46, 303, 320
TatI	WGTACW	1 cut(s)	253
Tru1I	TTAA	3 cut(s)	35, 263, 335
Tru9I	TTAA	3 cut(s)	35, 263, 335
TseI	GCWGC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	161
Tth111I	GACNNNGTC	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.